ccdc107 (ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866)


Basic Information

Item Value
gene id ccdc107
gene name ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 177273 ~ 184430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236794.1
cttcaaatgttgactattgTATAATGTGTACTATTTACAACACTTTGTTAATGACTGTAGTATAGTGAACTAATAAACGGCAATATATACTGTAGTGTACTTCACTTTATGTTACAGTAAACTGTAGTTTATTGTTatgtaatatacaatatatctGTAGAAAACTTAGTAGAGTATTGGGTTAAGTCGTTTAGTATTtgtatgaaaatgcatttctagTTTTTAATCAGCCTAAACAGAATTGATGATaactacaaaaacaattacaaaacaaaaaaactgaagacaaactggAGTTTGAAGTACTGCACTTGTAGAAGCTTGAGGTTTTAAACGGGTTTGGATGAAGGTACAAATAAGGAATACTGgtggaaagtaaaaaaaaaaacctctcctTCAGTTTAGATAAGGgggtaaaaaaacaaagtctAGAGTCCATCAGCTCAATCTTATGTTAATTGCAGTGATAGCTGTCTTCTGCTTCTGATAAGGCAAACAATGATTTAAAGCTCTGTTTTCACGTCTATATTCAGTACATATTTGCGTTAAACATTCGCACTCCGAGCTGAAGACAAAAAGTTGGCGCCCTGCAAACGTAAGaattgtttttgtagttttctgACGTGCAGCTACTCCGACTTCTGGCCGCAAGCGCACGACCGAAGAAACCCCGCGGTTCCGCTCCGGTCCTGTAGAGGTCAGCGGCGGCGCTCCCGCGAGATGTCCGTCGCGCACGCTCACGCGCACCGAAGAAGACGTCCAGTCAACAGACGGCGTGTATGTGATCGAGCGTTATTAACTGTCGCTCGGAGATGGTGCTGTCCTCTTCTCAGCAGCTCGTGATGGCGTTCACGGCCGTGCTGCTCGTGTTTGTGTTGTTCCCGCGGATGTTCGGCGGCGGAAGCAGAGACGGGGAGACCTTCGACCCGCGGATCAGCAGGAGAGGTCCTGGTCCCGGTCCCGGTCTCGGTCCTGGGAGTGTGAAAAGTCAGCAGCAGTACCACAGGAACGCAGCGCCTCAGATGTCTCAGAGCGTGGAGAACATGCAGCAGATGAAGAAACTCATGGAGCAGGAGCTGAAGAGCGACAAATACAAATCCAACAACAATAAGGGCTACGTCTTCACCCTCATGCCCATCTACGCCATCGGTGTCGGCCTCTTCGCTGCGTATAAATTTCTGAAGatAAAATCTGCAAGTGATTCTGAAACCCAAAAAGCCAAAACGGCTCGAGGAGTGAAGAAATCAGCGGAGACAGAGAACCAGCTGAACGAGCTGGAGCAGAGACTGGCTCAGACCGAGAAGATGCTCAACTCCATCCTGACCCAGCTGGACCCACTGACCAACTGTGTGAAGTCTGTTGCCATGGAGCAGAAGAGCGAGATCATGTCGCAGCTGCAGTGCATTCGGCAGCTAATGAAGAAGAGAGGCATGGAGTGTCCAAACATCAGGATAGAAGAGCCGTCGTGTGAGAGCAACCTGGACAAACTCATCGAGACTTTATCCGCAGCTGAGACGCTTCCAGAAACTCAAACACAGCCACAGGATCTCCGAGAGCTCAGGCCTGAGTCTGAGGgagaggaggacgaggaggagaaCAGACCTTCGCAGGGAGAGGAAGACGTGGGGAGTGAGAGTGACTCCAGCATGCCGTCCCTGGAGGAGCCGGCCGAAGTCAGTGTAGAGGACGTTACAGTCGATCAGACGGCTGGATTACGACGACGCAACAGGCCTGAGTAACCCCGGCGAGAATCGGAcacatatctatttatatatttatttatttattcattttattccttGTAACGAAGCGGTCAGCGCTACTTACTGGTTTCAACTCCTGCATATTTTACTGCGTTTGAAGTTAATCGAAATCAAACTCCGTTCatcgtttatttgatcaaaaatagagtaaaaatgGTCAAtgttattgtaaattaaaatagctgttttagcGTCGTTACTCAAGTCCTtcgtatttttgtgttttatttgttctttgatgaattgaaagttctaaaacaacatttatttcaagtagAAATCTTTTGCCGTCACATTAGAATAGTTCAATTCatccttgattttttttttttcttgtttttttattttatttaaccttGTTTTAAGCATTGAAAAATTAAGCagtggaaattcagctttgcatcaaaggatatatatgaatatattcgtgtagaaaacttattttatattgtaataatattttacttttacttgatTTTACTGGATTTTTATATCGGATAATTAATCGGTGAGGTTATTCCAAAGCAGAAAATGTTTGTCgtcttaattttttatttatttatttttttatgtatcgcAGTGTAATAACTTGCCCTGCCTCTAAAATCATCATCAAAGCCATGTGGGCGGGGGAAATAAAATCAAGAAATAGTCATTTAACTATTTGGTCAGTCTTTCTGTTAGTAATAACAAATAATGGTGTACAGAAACATGGAAGTGAACCTAGATGTGAATATCACTTCATGTTGACTTGTAAGTGTTCTCTGTGTCTCCTGTGGTTGGAGTCATACTCACGGGTACGTCTGATTCGGCGAGGCTCGAGGAACACGTTTGCCGTGTTTAACACCGTTGCATGATTCTGGTATGACAATCATATACTACGAAGCTTTTCAGAAGTCAAGGGGAGGTCAAAGCTTTGagctttagtttaaaatattttttctttttggcttgAATCAAATACCAAACACTAAATGTGATTGTGAGTGAGATGATGTTCACGTTGTTGCTTTCtgtgccactttttttttttttttttttaatttttataaatatgtctgACGTGTTTCAAGTTACCTCCTTTTTGTTTCATCACTTTGCCAAGCATATTTTgacaatataaagaaaaaatattaatgttccAAAGTAGAGTTGATTCCTAAAtcaaaatgtacagtacattttttGGTGACCATTTCAAACCCAACAATTGCTGCcgtgttttaaaaacatgcaactGGTCCTGTTAAAACCATGTTTTGTTGCATGTCTTTTAGCGATCATTGGATGTGATTGGCATGTGATCAGTCTCTGTGCATCCTGTGCTCATTGTTTTTTTGCCTTGTATTTGGTGTGGATTAAATGaccatatatttattatgaatgacttttgaaagctttaaataaactaaaaataaaatgca

Function

symbol description
si:ch73-278m9.1 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107).
ccdc107 Predicted to be integral component of membrane.

NR:

description
PREDICTED: coiled-coil domain-containing protein 107 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236794.1 True 3187 mRNA 0.41 6 177273 184430

Neighbor

gene id symbol gene type direction distance location
kcnc2 kcnc2,LOC107555885 coding downstream 5939 136003 ~ 171334 (-)
cpsf6 cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007 coding downstream 90663 75381 ~ 86610 (-)
krr1 krr1 coding upstream 15381 199811 ~ 205364 (-)
phlda1 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 coding upstream 65711 250141 ~ 252421 (-)
nap1l1 nap1l1,LOC107656454,LOC107555881,LOC107658961 coding upstream 68836 253266 ~ 267765 (-)
csrp2 csrp2,LOC107708016,LOC107658959,LOC107656449 coding upstream 175737 360167 ~ 369423 (-)
e2f7 e2f7,LOC107707966,LOC107658780,LOC107656240,LOC107576735,LOC107584022 coding upstream 187440 371870 ~ 383326 (-)
G24713 NA non-coding upstream 6966 191396 ~ 194159 (-)
G24712 NA non-coding upstream 21463 205893 ~ 208820 (-)
G24724 LOC107555883,LOC107708011,LOC107658963 non-coding upstream 28175 212605 ~ 213246 (-)
G24792 NA non-coding upstream 420453 604883 ~ 605114 (-)
G24795 NA non-coding upstream 427961 612391 ~ 612843 (-)
si:dkey-97m3.1 NA other downstream 103592 47610 ~ 73681 (-)
LOC122343420 wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727 other downstream 143346 19991 ~ 33927 (-)
G24689 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107711503 other downstream 166172 10833 ~ 11101 (-)
G24708 NA other upstream 2030 186460 ~ 191242 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other upstream 95568 279998 ~ 341953 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other upstream 222212 406642 ~ 496868 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other upstream 680254 864684 ~ 933108 (-)
G24875 NA other upstream 884730 1069160 ~ 1070096 (-)

Expression


Co-expression Network