kdr (kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422)


Basic Information

Item Value
gene id kdr
gene name kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17644435 ~ 17665897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236807.1
GCTCCTCCCTCGCCTTCCTCTCCATCGGCGCGCTTCAGGCGCGCGTCCGTCGGCGAGCGCGCAACAGGTCCTCACGAGGTGTCAAACTCAGAGCCGTCTCTTACGAAGTCTGCCCTTCACCCGTCCAACCCGCAACGTTAAGGATTTTAAAGAGACTGAGGGTGTCGTGTCGTCGTGATGAGGAGCTGAGGAATCTGTGAATTTTGGTTTGATGTCGGGACGGTCCAGCGTTACTGTCGGGCGATGGCAAAGACATCTCATGTGCTTTCTCTCGTCGACATCCTCTTTACCGTCAACTTGGTTATAGcgATAGAGCTCAGGTTTGTGCCTGATCCTCCGACCTTAAACATCACTGAGAAGACTCTCAAAATCAATGCCTCAGATACACTGGAGATCACGTGCAGGGGACGTCAGATCTTGGAGTGGTCTACACCTCACAACCGAACCCGCTCTGAAACCAGGCTCACCACAACAGACTGTAGCGGCAATGGACTGTTCTGCAGCACTTTAACTCTCTCCAAAGCCATAGCCAATGAGACTGGAGAATATCGCTGCTTCTATAAAAACCTGCCTGTAGAGGATGGAAAGACTTCTGTATCTATATATGTCTTCATTCAAGATTATCGTACGCCATTTGTCCGAATGGCTCAGGATTATGATGTGGTGTTCATTCGTGAGGGAGAACAGGTGGTCATACCCTGCCTGGTATCTGTGGAGAACCTAGACGTCACTCTGTACACAAAGTATCCAGTAAAAGAACTGGCCACTGATGGGAAAGAGGTCATCTGGGATAGCAAGAGGGGCTTCATCCTGCCCAGTCACGTGGTCAGCTATGCTGGGGTGGTCTACTGCCAAACTACTATTCGAAACGAGACCTATCAGTCATCACCCTACATTGTGGCTGTCGTAGGATACAAGATCCATGACCTCACCCTGAGTCCAACTCATGAGAGGCTAACGGTAGGGGAGAGGCTAATGCTAAACTGCACCGCTCACACCGAACTTAATGTGGGAATCGACTTTCAGTGGACCTTCCCTCATGAGAAGAGAGGCATCAACAGCTCGATACCACGCCATGAGACCAGGTCCTACAAGAAGAAGCTGTGGAACTCCTTAGAACTGTCTAATACTCTCATTGTAGAGAATGTAACTGTAAATGATACAGGAGAGTACATCTGCACAGCCTCTAGCGGTCAGATGCAGAAGATTGCCCGAGTAGCCCTCATCGTCTATGAGAAACCATTTATAGCGCTCAATGATCAGATGTTGCAGACTGTGGAGGCAACCGCTGGCCAGGAAGAGGCAAAAATCCTGgttaaatattatgcatatcCAGAGCCCTTCGTCAGGTGGTATAAGAATGATCAGATAGTGGGGAAGGATGAGTACAGGATGAAGCCCAACAGAGGATCTCTTACTATATACGGGGTGACAGAGAAGGATGCTGGGAATTACACCGTTGTCATGACAAATAAGATTACCAAGGAGGAGCAGAGAAGAACATTTCAACTGCTGGTTAATGTTCATCCTAAGATCTTTGAGAAGGAAGTGACGTTGGATCGAGATGTTCACATGTACGGCAGCAGCCCTACACTGAGATGCACAGCTAGCGGAGGATCCAGCCCTGTCACAATACAATGGCAGTGGATGCCCAGAGAGGACTGCCCAGTCCGGTTTCTACCTAAGTCAGACCAAAGTGTGGTTAAGTGTAACAAGTGGAGGGAGATATCAAACAACACAGGGAAGAATCCCATCATCAGCCCCACATCTGTCATTGAACGCTCTCTTAAGACCATCAGCACACTGAAGATCCAGAAAGCAGTTGATCATGCCCTGTACAGGTGCATTGCTTCCAATAAGATGGGAATAGAAGAGCGAGTCATTGTGTTTCAAGTAGCTCGTTTCCTCAATCTAAGCGTCCTCCCCTCCAGCAGTCCTATCGAGGGAGAGGATGTGTTAATGCGCTGTGTAGCCGATCGACTGCTGTACTCTAACTTGCGTTGGTATCGGGTAACAAACATAGCCAACCCCGATGCCTCTCCGGCAGCCGTGCCCTGCGATACCCTTACCCTGTCACCTCTCCACCAGACCAATGTCACCATATCAGGCCCGAAGGGAACCAATGCAACGCTAGACCTGCCCATACCCAGTGCCACATTGATGGACCAAGGCCTATACGCTTGCCAAGTGGAGAATGTGGGCACCAGTGAGAGAACCTGCTTACTTTACAACCTCAGACTCAGAGCTCTTGAGATGTCAAGAATTGTGACCAATCTGACTGACCAGAAAGTCAATGTGAGCGACTCTACTACTCTTGTGTGTGAAGTGTCCGGGACACCAACCCCTAATATAGTATGGACTAAAGACAACCAGACTGTCATGGAGGGGTCAGGTGTGATTCTGAAACAGTCAAATCGTGTTTTAACCATCCAACGGGTGAAAAAAGAGGACAGCGGTCTGTACGTATGTACTGCCTGTAACCAGCAAGGTTGTGACTTTCACGAGGCGCGTATCACTGTAGATGGTGCAGAAGAAAAGATGAACGTGGAACTGATCATGCCTATTGGTGCCGTGGTCATCGCCATGTTCCTCTGGCTCCTCATCGTCTTCGTCATCCGTAATAGGAAGCGGCTGCCTAATGAAGGAGATCTGAAAACTGGCTACCTGTCAATCATTCTGGACTCAGATGACATGCCAATGGATGAGCACTGTGAGAGACTGACCTATGATGCAAACAAGTGGGAATTCCCACGTGACAGACTGAAGCTAGGAGAGCCGCTGGGCAGAGGGGCATTTGGTCAAGTCGTGGAGGCGACGGCATATGGTATTGAGAAGGCCACCACCTGTACTACAGTAGCAGTGAAGATGCTCAAGGAGGGCGCTACCACCAGTGAGTACCGTGCTCTGATGTCTGAGCTGAAGATCCTCATCCATATTGGTCACCATCTCAATGTGGTTAACCTTCTAGGAGCCTGcaccaaaccaggagGACCCTTGATGGTGATTGTGGAGTACTGTAAACATGGTAACCTCTCCAGCTATTTAAAAAGCAAGCGAGGAGAGTACAGTCCCTACAAGAAGCGAACTCCACGGATGCCGTGCAGGAGGGAGGTGCAGCAGGAAGAGGATTTGCATGAGGGGGATCTGGGTCTGGGGACCAGCACTCGGCTGGACATCTGCACTGGTACGGCCATGTGCACCAGGACAGGAGAACAGACCCCCACCAACCAGCAGCAGGATGAACAAGAGAGTTCAGACTGGGATCACCTGACGATGGAGGATCTTATCAGCTACAGTTTCCAGGTTGCCAAAGGCATGGAGTTCCTAGCCTCGCGAAAGTGTATCCACCGGGACTTGGCAGCCAGAAACATCCTACTCTCTGAAAACAATGTGGTGAAGATCTGCGACTTCGGGCTGGCCAGAGACGTGTATAAAGACCCCGATTACGTCCGTAAAGGAGATGCTCGTCTTCCTCTGAAGTGGATGGCCCCTGAGACCATCTTTGACCGCGTGTACACCACACAGAGTGATGTTTGGTCCTTTGGTGTGCTGCTTTGGGAGATCTTCTCACTTGGTGCGTCTCCATACCCAGGTGTGTGCATTGATGAGTCTTTCTGCAGGCGACTAAAGGAGGGAACCAGAATGAGAGCCCCAGACTACGCCACACCTGAGATATACCAGACCATGCTGGACTGCTGGCTTGATCGACCTAAAGACAGGCCGACCTTTACTCAGTTAGTTGAGCATCTAGGCAATCTGCTACAAGCTAGCGCTCAACAGGATGGAAAGGACTACATCCCTCTGACAAACGGAGAGATGGAAGAGGAATCAGGGGCTCCTCACCTCAGTGTGACGTCGAAAAGGGCTTTCTATGCAGGCAACAAAGAGGCCCAGCTCCACTACGACAATGCTCCACCTCTGGGGTTCCCACAGCAGATCGACACTTGCGGTGTCCCAATAAGTATGACGCCTTTTGTGAACATTCCCCTGGAGCACACTGCTGTAATGAACGGGCACATGGACTGTGGCGTGGGCTTGTCACGTGATCAGATGAAAGCTTTGGATCGGCAAGGGCAAAGACCACTTAATTTCAGCCCACTACTGCGATGCAAGAGCAAGGAGTCTTTAGCATCTGAATCGTCCAATCAGACCAGCGGCTATCAGTCCGGCTACCACTCTGACGATGCAGAAGCCCCTATATACGCCAACGAGGAGATGATCCTGAAGAGGGACATTCGGATGAAACCTCCGCTGCCCAAGAGAAATGACAAGTTCAGCGGAGAGGTCCGTTATAGCGCGCCTCCGGTTTAACATCTATAGAGCTTCAAACAGTCTTCCTCTTTGTGTTAATCAGAACTTTATTGTAGTATTCAgccaaaaaagaacatttcggtttcgtcatttactcacccaccATGTCTCGATCATGTGTGAGTTTCTTTCCTGGGCTGGACATAAAAGAAGATACTCCGAAGAATGATGGTAACCGCGGCAACCTGTAGCCAGTGACATCCATagtatgtaagaaaaaaaatactacggaagtcaatgggtgccgGCAAATTGCTTAGCAACATTGTtttcaacaaaagaaaactcatacaggttcagaaaaacttgagggtgagtaactgGTGAAagagaaatttcatttttcGACTGTCTTTAATGTAATAGTTCTGCCAAAATGTACAATTTGGACATCATCTCACCCTTGCGTCCTTTAAATCCTGTTTGATTATTACTTCTGTtcaaataagaaattaaaaaaaaaaaacaatgtccaAGCTGCACTTGGAtggatttttcattttggacCTTGTCAGCTTTTGGCCACCATGCATCACGCAATTTGCATTATTTGGTCGATTACTTTTTTTGATCAAGCTTTGTATCAGGTGGCCTTAAATACTATGGACTTGCATCAAagaataagtaaataagtacaatgtacttattgtgttcatattatattgcaaataactttttttctgctattgaggtggggaTACAGGTTTGTTAGGGataggtttggtggtatggatAAGTTTAAGGGTCGGTTAAATGATACAGATTAATTCTAAACTTaataacagaaattaattacagatgtaaccGCCTataggcatttttaaaaatataagtacgaTGTAAAAGCGTGCATGtatacaataagtgcattgtacctaatgattcatttaaatagtaTCGAAGGCctcctaatataaagtgggacccttttttgttcctttgaaagtcatacaggtttaggaGAACACGAAGGtgcataaataagtaaaaaaatttaaaattgggTGAACTTTCCTATCGTGCCGATGCCATAGAACAGCCAAAGGCCAGCTTCTTACCTAAAATAAGTAGCAACCTTTTCACTTTTCATCCCGTATGAGGTTTTTCCTGCCATTACTCGTAATATCTGCATCATCCAAAACCAACAAACCGTTAAATTGGCCGTCGAGCTTCGATTGAGGCGCACCGTTATCGCTTCTTCCGTAATTGTACGCATAAAGGAACCGCCGACTCATTTGAGCTGTTAACTGTTTCTTTTATCATGCTcgttttgaaataaatgtaatatattgtttCGCAACAGACTGTTTTGGAGCAGATAAGatgtatgttttagttttattcttcTAAATGTCAGGGGAGTTTGGAGAGCGAGAAAGCCTTAGCCGTACAATCATGTTTACACAGACTGCGGAGCAAGAGTGGTCTCTCGTTGTGTCCACGCCACTTCCTGAGCAAAGGCATGCCCTCTTCCTACCGCACAGGAAATAGCAACTGGAATGTCAGACAATtgagtgtgtgaatgttttccattttttttgtcttcatctCTTGCATTGTCTTTAAACGTATCGTGACCAGACTTGTTCTCCCCCAAGCAACGATTTTGTTTTCTCAGCTTTGTTCGTCAGTTGGCCTTTTGATTGTACAGTTTATAATGAGGGCCTTCTTTGTCTGtgtaagaaaaatgtcatttattttgccattatgattatattatttagttacACGTCCATTaatgtaattagttttttaaaataaacactctTGCCAGTTAAAAAGGA

Function

symbol description
kdr Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within angiogenesis. Predicted to be located in endoplasmic reticulum. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; endocardium; intermediate cell mass of mesoderm; tail bud; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including adhesions of uterus; artery disease (multiple); gastrointestinal system cancer (multiple); macular degeneration (multiple); and pancreatic cancer (multiple). Orthologous to human KDR (kinase insert domain receptor).

NR:

description
vascular endothelial growth factor receptor 2 isoform X1

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0005769 early endosome cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG:

id description
K05098 KDR, VEGFR2, CD309; kinase insert domain protein receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236807.1 True 6095 mRNA 0.47 30 17644435 17665897

Neighbor

gene id symbol gene type direction distance location
clocka clock,clocka,LOC107701480 coding upstream 13613 17582070 ~ 17630822 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding upstream 65631 17565453 ~ 17578804 (+)
LOC122342653 l3hypdh,LOC107684001 coding upstream 154140 17483433 ~ 17490295 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding upstream 233583 17397135 ~ 17410852 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding upstream 295565 17308293 ~ 17348870 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding downstream 139943 17805840 ~ 17811463 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding downstream 235544 17901441 ~ 17902917 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding downstream 246542 17912439 ~ 17915594 (+)
exosc2 exosc2,exos2 coding downstream 267408 17933305 ~ 17937916 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 273787 17939684 ~ 17963519 (+)
G29272 NA non-coding upstream 90245 17553833 ~ 17554190 (+)
G29200 NA non-coding upstream 258755 17385289 ~ 17385680 (+)
G29192 NA non-coding upstream 349795 17294375 ~ 17294640 (+)
G29181 NA non-coding upstream 423819 17220257 ~ 17220616 (+)
G29178 NA non-coding upstream 424921 17219142 ~ 17219514 (+)
LOC122342426 NA non-coding downstream 1253 17667150 ~ 17669761 (+)
LOC122343158 NA non-coding downstream 44158 17710055 ~ 17711711 (+)
G29305 NA non-coding downstream 72170 17738067 ~ 17739667 (+)
G29306 NA non-coding downstream 79631 17745528 ~ 17746317 (+)
G29317 NA non-coding downstream 151649 17817546 ~ 17817933 (+)
atp5mj NA other upstream 603605 17038419 ~ 17040830 (+)
G28982 NA other upstream 1170054 16473898 ~ 16474381 (+)
G28899 NA other upstream 1658709 15985219 ~ 15985726 (+)
G28891 NA other upstream 1802580 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1989157 15565499 ~ 15655278 (+)
G29526 NA other downstream 634518 18300415 ~ 18301189 (+)
G29545 NA other downstream 770563 18436460 ~ 18461317 (+)
G29642 NA other downstream 1217282 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1624323 19290220 ~ 19342911 (+)
G29835 NA other downstream 2065365 19731262 ~ 19786128 (+)

Expression


Co-expression Network