Item | Value |
---|---|
gene id | clocka |
gene name | clock,clocka,LOC107701480 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056702.1 |
NCBI id | CM032071.1 |
chromosome length | 29200999 |
location | 17582070 ~ 17630822 (+) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
clocka | Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Contributes to DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including photoperiodism; primitive hemopoiesis; and regulation of gene expression. Located in chromatin. Part of transcription regulator complex. Is expressed in brain; head; ovary; and photoreceptor cell. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CLOCK (clock circadian regulator). |
clock | Enables E-box binding activity and histone acetyltransferase activity. Involved in several processes, including DNA damage checkpoint signaling; cellular response to ionizing radiation; and regulation of gene expression. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in chromosome; cytosol; and nucleoplasm. Part of transcription regulator complex. Implicated in Alzheimer's disease. |
description |
---|
circadian locomoter output cycles protein kaput |
id | name | namespace |
---|---|---|
GO:0009266 | response to temperature stimulus | biological_process |
GO:0032922 | circadian regulation of gene expression | biological_process |
GO:0009648 | photoperiodism | biological_process |
GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0004871 | obsolete signal transducer activity | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0046982 | protein heterodimerization activity | molecular_function |
id | description |
---|---|
K02223 | CLOCK, KAT13D; circadian locomoter output cycles kaput protein |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043236808.1 | True | 7200 | mRNA | 0.46 | 24 | 17582070 | 17630822 |
XM_043236809.1 | False | 7078 | mRNA | 0.46 | 23 | 17607074 | 17630822 |
XM_043236810.1 | False | 7197 | mRNA | 0.46 | 24 | 17582070 | 17630822 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
nmu | nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 | coding | upstream | 3266 | 17565453 ~ 17578804 (+) |
LOC122342653 | l3hypdh,LOC107684001 | coding | upstream | 91775 | 17483433 ~ 17490295 (+) |
esr2a | esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 | coding | upstream | 171218 | 17397135 ~ 17410852 (+) |
jag2b | jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 | coding | upstream | 233200 | 17308293 ~ 17348870 (+) |
nudt14 | nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 | coding | upstream | 288434 | 17266457 ~ 17293636 (+) |
kdr | kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 | coding | downstream | 13613 | 17644435 ~ 17665897 (+) |
LOC122343009 | zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 | coding | downstream | 175018 | 17805840 ~ 17811463 (+) |
oxt | oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 | coding | downstream | 270619 | 17901441 ~ 17902917 (+) |
fabp1a | fabp1,fabp1a,LOC107745323,LOC107597935 | coding | downstream | 281617 | 17912439 ~ 17915594 (+) |
exosc2 | exosc2,exos2 | coding | downstream | 302483 | 17933305 ~ 17937916 (+) |
G29272 | NA | non-coding | upstream | 27880 | 17553833 ~ 17554190 (+) |
G29200 | NA | non-coding | upstream | 196390 | 17385289 ~ 17385680 (+) |
G29192 | NA | non-coding | upstream | 287430 | 17294375 ~ 17294640 (+) |
G29181 | NA | non-coding | upstream | 361454 | 17220257 ~ 17220616 (+) |
G29178 | NA | non-coding | upstream | 362556 | 17219142 ~ 17219514 (+) |
LOC122342426 | NA | non-coding | downstream | 36328 | 17667150 ~ 17669761 (+) |
LOC122343158 | NA | non-coding | downstream | 79233 | 17710055 ~ 17711711 (+) |
G29305 | NA | non-coding | downstream | 107245 | 17738067 ~ 17739667 (+) |
G29306 | NA | non-coding | downstream | 114706 | 17745528 ~ 17746317 (+) |
G29317 | NA | non-coding | downstream | 186724 | 17817546 ~ 17817933 (+) |
atp5mj | NA | other | upstream | 541240 | 17038419 ~ 17040830 (+) |
G28982 | NA | other | upstream | 1107689 | 16473898 ~ 16474381 (+) |
G28899 | NA | other | upstream | 1596344 | 15985219 ~ 15985726 (+) |
G28891 | NA | other | upstream | 1740215 | 15841372 ~ 15841855 (+) |
cdkn1d | LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 | other | upstream | 1926792 | 15565499 ~ 15655278 (+) |
G29526 | NA | other | downstream | 669593 | 18300415 ~ 18301189 (+) |
G29545 | NA | other | downstream | 805638 | 18436460 ~ 18461317 (+) |
G29642 | NA | other | downstream | 1252357 | 18883179 ~ 18886402 (+) |
G29814 | LOC107660256 | other | downstream | 1659398 | 19290220 ~ 19342911 (+) |
G29835 | NA | other | downstream | 2100440 | 19731262 ~ 19786128 (+) |