tmem165 (tmem165,LOC107683960,LOC107665411,LOC107718400,LOC107755243,LOC107601909,LOC107573988)


Basic Information

Item Value
gene id tmem165
gene name tmem165,LOC107683960,LOC107665411,LOC107718400,LOC107755243,LOC107601909,LOC107573988
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17631493 ~ 17636289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236813.1
GTTTGCCCTGGTATCAGCCTTTCTCACCGCGAAGATGACCACGGTGGGCTAGCCTGGTGGTAGAGACGAAAcgttaatgtatataaattagcGGTTTTATTAGCTTGATTCGTAAAGTATTATCACAGCAGAAGCCGTATTAGTCAGCCCTTAAGATGCCTCTTCGGGCCGGCGAGCGGCATGGCGGTGGCAGGTCTATATGCTTCCTTGTTCTGCTTAGCGTCGTGTTGTTTTCAGCCGGAGTTACAGCAACTCAAGAAGAGAATAAAGTCATTCACGAGGAGAAGCCAGCGGAGCTTCAGAAGGCAACCACCGGTCAAGCACCCGGCCCGGCGGTGAGTGTGGATGAACCCAATAAGGGAAACCTGGGCTTCATTCATGCCTTTGTGGCAGCCCTGTCAGTCATCATTGTCTCTGAACTGGGAGACAAGACGTTCTTCATCGCAGCCATCATGGCTATGCGCTACAATCGCCTCACTGTTTTGGCAGGCGCCATGTTGGCTCTGGGACTCATGACGTGTCTGTCAGTCCTGTTTGGTTATGCCACCACCATCATCCCACGGATCTACACCTACTACATATCGTCGGCGCTGTTCGCAATATTTGGTGTGAGGATGCTGAGGGAGGGACTGAGGATGAGTCCTGATGAAGGGcaagaggagctggaggaggtcCAGGCAGAGATAAAGAAAAAGGATGAAGAGCTTCAGCGCTATAAGCTAGCCAACGGCGCACCTGACGTGGAAGCAGGGACAGCAGCAACATTACCTCAGAGAAGATGTCACAGTGTGATTTCACCAATATTCATTCAGGCACTTACCCTCACCTTCCTGGCAGAGTGGGGCGACCGCTCTCAGCTTGCCACTATTGTGCTGGCTGCAAGAGAGGATCCTTTTGGAGTAGCAGTTGGGGGAACATTGGGACACTGTCTGTGCACAGGCCTGGCTGTTATCGGCGGAAGGATGGTGGCTCAGAAGATCTCAGTAAGAACCGTAACGATCATCGGTGGAATCGTTTTCCTCGCCTTTGCGTTCTCTGCCCTCTTTATCAAGCCTGATTCTGGATTCTGATGAACTGACTCTTggtttcattttgtaaatatacaaCCCAGAACAAGTGGAACAGAGACTGCGCAAAGACTGCGGATGGCTTGTTTCTATGTTTGTGTGACTGAATCAGTGAAAAACGATTTACTGCTCATGTCCTGAtgagcatttgtttttgtttatttgatttatctttgttttttgtctttctttgctttcttccAGACGCCGTTCTGTTTTTAGGTGATCATTATATATCTCCCCTTTATGCCTCCTAGAAGTTTACTTGAACTTGCCAGATGTTCGCCTGGCACATAGTAACGTTTTAAATAGCAAATCACGTTTTACTTCTGTTTGAGCAGTGTGCCATTAGCAAATACCGGCCTGGCTCCGGTCTTAAATCAAGTTCCACCTTACTTGACTACAACGgctctaaaactaaaaccagaTCACTCACCCACTGCACAGCGCTAAATCTACTCGCGTCTCAGGAGTATTTCGTTAAGAGTCTAAACTGCCTGTTGATGGTTTGTCCTTATTTCATGCCGTATTACCAAAGGCTTTAAATGTTGTAAGAGATCACACGATCACATGTGGCCTTTAAACCCAGTCACAGTATTTACTGGTCATCATTGTGCGCTCATAAATGCGTCTGTGCTTCTGCGTCACACAGCATACAACCTTGTGTTTGGAAGAATAGAATTTCTTAAGTCTGCCCTTTCCTtctgaatgatttttatttattctaatacgGAGCACAGATATTGATATTTTGTCTGGGTTGATTGGTTTCATtgagaagaatttttttttttttttacatatttaggGAGACTTTGTCAATATTTGACAGGGACTAACTTCGGAGAGTGTGCTGATTGAACTATTGTAGAAGAACTGCAAAAATGTTATACttgtaaatattgaataaaaaggtCAGTCTCA

Function

symbol description
tmem165 Predicted to enable calcium ion transmembrane transporter activity and manganese ion transmembrane transporter activity. Acts upstream of or within osteoblast differentiation; protein N-linked glycosylation; and skeletal system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in head; heart; and heart tube. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIk. Orthologous to human TMEM165 (transmembrane protein 165).

NR:

description
transmembrane protein 165 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236813.1 True 1991 mRNA 0.45 6 17631493 17636289

Neighbor

gene id symbol gene type direction distance location
daam1b daam1b,LOC107701451,LOC107755211,LOC107718401,LOC108412077 coding downstream 79147 17488260 ~ 17552346 (-)
LOC122343418 LOC107683962,LOC107701452,LOC107755208,LOC107601897,LOC107568118,LOC107718425 coding downstream 148738 17411018 ~ 17482755 (-)
btbd6b btbd6b,LOC107589075,LOC107755235,LOC107718408,LOC107560384,LOC107701487,LOC107683969 coding downstream 488213 17138065 ~ 17143280 (-)
LOC122342663 NA coding downstream 501228 17123907 ~ 17130265 (-)
ckbb ckb,ckbb,LOC107560383,LOC107755234,LOC101477834 coding downstream 541993 17085462 ~ 17089500 (-)
LOC122343120 LOC107746441,LOC107599206,LOC107661202 coding upstream 74906 17711195 ~ 17713523 (-)
LOC122343083 NA coding upstream 77457 17713746 ~ 17717051 (-)
LOC122343057 NA coding upstream 81475 17717764 ~ 17719790 (-)
LOC122342227 NA coding upstream 83859 17720148 ~ 17726796 (-)
LOC122343038 LOC107698808,LOC107743352 coding upstream 92233 17728522 ~ 17731397 (-)
G29273 NA non-coding downstream 77529 17553762 ~ 17553964 (-)
G29212 NA non-coding downstream 281987 17349289 ~ 17349506 (-)
G29179 NA non-coding downstream 412040 17219151 ~ 17219453 (-)
G29143 NA non-coding downstream 590659 17038827 ~ 17040834 (-)
G29127 NA non-coding downstream 605154 16955455 ~ 17026339 (-)
G29388 NA non-coding upstream 6090 17642379 ~ 17642637 (-)
G29408 LOC107755246,LOC107683958,LOC107718397 non-coding upstream 63135 17699424 ~ 17701373 (-)
LOC122343157 tatdn1 non-coding upstream 96114 17732403 ~ 17733334 (-)
G29420 NA non-coding upstream 113522 17749811 ~ 17814034 (-)
G29425 NA non-coding upstream 159783 17796072 ~ 17805409 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 509364 17118343 ~ 17122129 (-)
G29135 NA other downstream 613670 17006927 ~ 17017823 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 731198 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 922533 16707774 ~ 16708960 (-)
G28898 NA other downstream 1698629 15932494 ~ 15932864 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 734 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 98317 17734606 ~ 17744543 (-)
G29417 NA other upstream 99061 17735350 ~ 17736274 (-)
G29473 NA other upstream 334316 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 772271 18408560 ~ 18428343 (-)

Expression


Co-expression Network