LOC122342760 (wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320)


Basic Information

Item Value
gene id LOC122342760
gene name wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3311653 ~ 3381172 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236826.1
TTCCTAAATGTTTCCCCAGAGGAGGCTCTTCGCGTTTCCATTTCTTGGACGAGGAAGGATGGATGTGAGAATGAACCAAGGACACCTACTTTTGGCAGTGACTCTCATCGTCTGCAACTCACAGCTGCTGGTGGTCGCCAACTCATGGTGGTCATTAGCTATGAACCCCATCCAAAGACCGGAGATGTACATCATTGGAGCACAGCCTCTGTGCAGCCAGCTGATGGGCCTGTCTCAGGGTCAGAGGAAGCTCTGCCAGCTCTATCAGGACCATATGGTTTATATCGGAGAGGGGGCAAAGACGGGCATCAAGGAGTGTCAGTATCAGTTCAGGCAAAGGAGATGGAACTGTAGCACGGTGGACAACACATCCGTGTTCGGCCCCGTCATGCAGATAGGCAGCAGAGAAACAGCTTTTACTTACGCCATCAGCGCAGCGGGCGTCGTGAATGCGGTGAGTCGGGCGTGCCGTGAGGGCGAGCTCTCCACCTGCGGCTGCAGTCGAGCGGCTCGCCCAGGACCTCCGAGAGACTGGCTGTGGGGCGGCTGCGGGGACAACGTCAACTACGGCTACCGCTTCGCCCGGGAGTTCGTGGATGCCCGCGAGCGCGAGAAAAACTACCCGCGTGGGTCTGTCGAAAACGCACGCACGCTTATGAACCTACAGAACAACGAGGCCGGGAGAATGGCAGTGTACAATCTGGCCAACGTCGCGTGCAAGTGTCACGGGGTCTCCGGCTCGTGCAGCCTGAAAACCTGCTGGCTTCAGCTGGCCGACTTCCGGCGTGTGGGAGAGTTCCTGAAGGAGAAGTACGACAGCGCCGCCGCCATGCGCATCAACCGACGAGGCAAGCTGGAGCAGGTCAACCACCGCTTCAACCCCCCGACCAGCGAGGACCTGGTCTACATCGACCCCAGCCCGGACTACTGCCTGCGTAACGAGACCACGGGCTCTCTGGGCACCCAGGGCCGCCTTTGCAACAAGACCTCGGAGGGCATGGACGGCTGCGAGCTCATGTGCTGCGGTCGCGGTTACGACCAGTTCAAGACCTACAAACACGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGCTGCACGTCGCTCGTAGACCAGTTCGTGTGCAAGTAGCAGCCTAGGGACAGGAACAGACGCCCTGGAGAGGCACTGAGCAATTAGCGGGAGAGGAA
>XM_043236827.1
GCAATGCACAAACTAGTCAAAACTCAGTCTTTCACCCCCCTGCCTGCGGACCGAAGCAGTCGCTAGAGTTTCTTCGTCGTCTGCTTTTAGTGCTTTCTTGGAAGCGCCGGGGTTTTAGGTCAAAAGCCCGAGCAGCCTCTGGAAGGAAAAGAGGGGGAAAGTTTGAAAAGGTCTCCGCGTTTGCTGCGCAAAAGGAGGATTTAGAAGTTCAGAGCGCAGGGAAAAGTTGTGAACGCATGAGCTCTGTGAGGTGGACTGATAGACTCCAGACTGCTTTTGTCTGCTAATTTCTCTAATAAGGAGGAAAAGTGTTTTGTCGCTCCCGTTACGCACGGCGAGCGCAGCGCGTTTGTTTGCGCTCTCGTCAAACTATTGAACGTTTAATTGACACCTGTTGCGCGACGTCCTAACGCTCTGTAGCCCGGTAAGTGCGTTCCCGTTTCACAAACTTTAACCCGAGTGATTTCCgcggaactttttttttttctcgcaatGGACAGCGCCGGACTGTTTTGGAGTATGTTCTTGAGGTGAATGAAACCTAGAAGAACCCTGGAGACGCAAACGCCGAGTTGAATCGACCGGAGGTGGAATTGTTTCCTATTTTCTGAAGGAACTCCTGCTTTATATGCGCTTCAGAAGTCCGTCGCGCAGAGAAGAAGACCGGGTTCAGCTGTCAGGACTTCAGCTCTGGAACTTCGGAGGAACTTTTGGAGAGCTGCACTGAGCGGATAGATCGAGATCTGCGAGCAAAGGAGGCTCTTCGCGTTTCCATTTCTTGGACGAGGAAGGATGGATGTGAGAATGAACCAAGGACACCTACTTTTGGCAGTGACTCTCATCGTCTGCAACTCACAGCTGCTGGTGGTCGCCAACTCATGGTGGTCATTAGCTATGAACCCCATCCAAAGACCGGAGATGTACATCATTGGAGCACAGCCTCTGTGCAGCCAGCTGATGGGCCTGTCTCAGGGTCAGAGGAAGCTCTGCCAGCTCTATCAGGACCATATGGTTTATATCGGAGAGGGGGCAAAGACGGGCATCAAGGAGTGTCAGTATCAGTTCAGGCAAAGGAGATGGAACTGTAGCACGGTGGACAACACATCCGTGTTCGGCCCCGTCATGCAGATAGGCAGCAGAGAAACAGCTTTTACTTACGCCATCAGCGCAGCGGGCGTCGTGAATGCGGTGAGTCGGGCGTGCCGTGAGGGCGAGCTCTCCACCTGCGGCTGCAGTCGAGCGGCTCGCCCAGGACCTCCGAGAGACTGGCTGTGGGGCGGCTGCGGGGACAACGTCAACTACGGCTACCGCTTCGCCCGGGAGTTCGTGGATGCCCGCGAGCGCGAGAAAAACTACCCGCGTGGGTCTGTCGAAAACGCACGCACGCTTATGAACCTACAGAACAACGAGGCCGGGAGAATGGCAGTGTACAATCTGGCCAACGTCGCGTGCAAGTGTCACGGGGTCTCCGGCTCGTGCAGCCTGAAAACCTGCTGGCTTCAGCTGGCCGACTTCCGGCGTGTGGGAGAGTTCCTGAAGGAGAAGTACGACAGCGCCGCCGCCATGCGCATCAACCGACGAGGCAAGCTGGAGCAGGTCAACCACCGCTTCAACCCCCCGACCAGCGAGGACCTGGTCTACATCGACCCCAGCCCGGACTACTGCCTGCGTAACGAGACCACGGGCTCTCTGGGCACCCAGGGCCGCCTTTGCAACAAGACCTCGGAGGGCATGGACGGCTGCGAGCTCATGTGCTGCGGTCGCGGTTACGACCAGTTCAAGACCTACAAACACGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGCTGCACGTCGCTCGTAGACCAGTTCGTGTGCAAGTAGCAGCCTAGGGACAGGAACAGACGCCCTGGAGAGGCACTGAGCAATTAGCGGGAGAGGAA
>XM_043236828.1
TCACATCTTCTGTTCTTTCATAGCTCCACtttctttcccttttctttctctctctcttttctctctgtatGCCTGGAGCCCACAGCCAGGTGAGGCCCCTCCAGAGAGTAATTACAACCTGAAACAGAGATCGGAGCCCTGCGGCGCTCACCATCAAAGCAGTCGTAAGGAACAGCCCGGGCTAATGTGCTGAAGAGGAGAGACACTGACAGGGCAGAAAGCAAGGAGGCTCTTCGCGTTTCCATTTCTTGGACGAGGAAGGATGGATGTGAGAATGAACCAAGGACACCTACTTTTGGCAGTGACTCTCATCGTCTGCAACTCACAGCTGCTGGTGGTCGCCAACTCATGGTGGTCATTAGCTATGAACCCCATCCAAAGACCGGAGATGTACATCATTGGAGCACAGCCTCTGTGCAGCCAGCTGATGGGCCTGTCTCAGGGTCAGAGGAAGCTCTGCCAGCTCTATCAGGACCATATGGTTTATATCGGAGAGGGGGCAAAGACGGGCATCAAGGAGTGTCAGTATCAGTTCAGGCAAAGGAGATGGAACTGTAGCACGGTGGACAACACATCCGTGTTCGGCCCCGTCATGCAGATAGGCAGCAGAGAAACAGCTTTTACTTACGCCATCAGCGCAGCGGGCGTCGTGAATGCGGTGAGTCGGGCGTGCCGTGAGGGCGAGCTCTCCACCTGCGGCTGCAGTCGAGCGGCTCGCCCAGGACCTCCGAGAGACTGGCTGTGGGGCGGCTGCGGGGACAACGTCAACTACGGCTACCGCTTCGCCCGGGAGTTCGTGGATGCCCGCGAGCGCGAGAAAAACTACCCGCGTGGGTCTGTCGAAAACGCACGCACGCTTATGAACCTACAGAACAACGAGGCCGGGAGAATGGCAGTGTACAATCTGGCCAACGTCGCGTGCAAGTGTCACGGGGTCTCCGGCTCGTGCAGCCTGAAAACCTGCTGGCTTCAGCTGGCCGACTTCCGGCGTGTGGGAGAGTTCCTGAAGGAGAAGTACGACAGCGCCGCCGCCATGCGCATCAACCGACGAGGCAAGCTGGAGCAGGTCAACCACCGCTTCAACCCCCCGACCAGCGAGGACCTGGTCTACATCGACCCCAGCCCGGACTACTGCCTGCGTAACGAGACCACGGGCTCTCTGGGCACCCAGGGCCGCCTTTGCAACAAGACCTCGGAGGGCATGGACGGCTGCGAGCTCATGTGCTGCGGTCGCGGTTACGACCAGTTCAAGACCTACAAACACGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGCTGCACGTCGCTCGTAGACCAGTTCGTGTGCAAGTAGCAGCCTAGGGACAGGAACAGACGCCCTGGAGAGGCACTGAGCAATTAGCGGGAGAGGAA
>XM_043236829.1
AAGGAAGTGGAAGGCGAGAGGTGGAGGGCAGAAAGGAGACAGAAAGATTGTGGAGCGGGCTAAAggagaaagaagaggaaaaatgaTGGAATTTCAAGAGCGCACAGTGGGAACGTCAGGAAAGTGTCTCGGAGTGAAAGCGAGCAACATGGGGTGGGAGTGACGGAGTTGACAGTAAAAGAGAGCATGAGCGAGGAGGCTCTTCGCGTTTCCATTTCTTGGACGAGGAAGGATGGATGTGAGAATGAACCAAGGACACCTACTTTTGGCAGTGACTCTCATCGTCTGCAACTCACAGCTGCTGGTGGTCGCCAACTCATGGTGGTCATTAGCTATGAACCCCATCCAAAGACCGGAGATGTACATCATTGGAGCACAGCCTCTGTGCAGCCAGCTGATGGGCCTGTCTCAGGGTCAGAGGAAGCTCTGCCAGCTCTATCAGGACCATATGGTTTATATCGGAGAGGGGGCAAAGACGGGCATCAAGGAGTGTCAGTATCAGTTCAGGCAAAGGAGATGGAACTGTAGCACGGTGGACAACACATCCGTGTTCGGCCCCGTCATGCAGATAGGCAGCAGAGAAACAGCTTTTACTTACGCCATCAGCGCAGCGGGCGTCGTGAATGCGGTGAGTCGGGCGTGCCGTGAGGGCGAGCTCTCCACCTGCGGCTGCAGTCGAGCGGCTCGCCCAGGACCTCCGAGAGACTGGCTGTGGGGCGGCTGCGGGGACAACGTCAACTACGGCTACCGCTTCGCCCGGGAGTTCGTGGATGCCCGCGAGCGCGAGAAAAACTACCCGCGTGGGTCTGTCGAAAACGCACGCACGCTTATGAACCTACAGAACAACGAGGCCGGGAGAATGGCAGTGTACAATCTGGCCAACGTCGCGTGCAAGTGTCACGGGGTCTCCGGCTCGTGCAGCCTGAAAACCTGCTGGCTTCAGCTGGCCGACTTCCGGCGTGTGGGAGAGTTCCTGAAGGAGAAGTACGACAGCGCCGCCGCCATGCGCATCAACCGACGAGGCAAGCTGGAGCAGGTCAACCACCGCTTCAACCCCCCGACCAGCGAGGACCTGGTCTACATCGACCCCAGCCCGGACTACTGCCTGCGTAACGAGACCACGGGCTCTCTGGGCACCCAGGGCCGCCTTTGCAACAAGACCTCGGAGGGCATGGACGGCTGCGAGCTCATGTGCTGCGGTCGCGGTTACGACCAGTTCAAGACCTACAAACACGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGCTGCACGTCGCTCGTAGACCAGTTCGTGTGCAAGTAGCAGCCTAGGGACAGGAACAGACGCCCTGGAGAGGCACTGAGCAATTAGCGGGAGAGGAA

Function

symbol description
wnt5b Enables signaling receptor binding activity. Involved in muscle cell differentiation; positive regulation of convergent extension involved in gastrulation; and positive regulation of non-canonical Wnt signaling pathway. Acts upstream of or within with a positive effect on midbrain-hindbrain boundary morphogenesis. Acts upstream of or within several processes, including animal organ development; convergent extension; and vasculature development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; cranial cartilage; fin; germ ring; and mesoderm. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 1. Orthologous to several human genes including WNT5B (Wnt family member 5B).

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform X1

GO:

id name namespace
GO:0009826 unidimensional cell growth biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0051209 release of sequestered calcium ion into cytosol biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0048884 neuromast development biological_process
GO:0031101 fin regeneration biological_process
GO:0008591 regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0061053 somite development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0005615 extracellular space cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K00444 WNT5; wingless-type MMTV integration site family, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236826.1 False 1206 mRNA 0.59 4 3371526 3381172
XM_043236827.1 True 1940 mRNA 0.56 5 3311653 3381172
XM_043236828.1 False 1410 mRNA 0.58 5 3360189 3381172
XM_043236829.1 False 1380 mRNA 0.58 5 3366615 3381172

Neighbor

gene id symbol gene type direction distance location
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 299549 3006873 ~ 3012104 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 317154 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 370056 2938072 ~ 2941597 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding upstream 384555 2923221 ~ 2927098 (+)
phyh phyh,LOC107743808 coding upstream 391410 2916161 ~ 2920243 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 198456 3579628 ~ 3601006 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding downstream 279445 3660617 ~ 3675293 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 297073 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 379412 3760584 ~ 3769843 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding downstream 508265 3889437 ~ 3895875 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding upstream 280761 2935162 ~ 3030892 (+)
G25456 NA non-coding upstream 286889 3017567 ~ 3024764 (+)
G25453 NA non-coding upstream 379794 2931108 ~ 2931859 (+)
LOC122343411 NA non-coding upstream 485864 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 523996 2726802 ~ 2787657 (+)
G25502 LOC107573038 non-coding downstream 27829 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 39464 3420636 ~ 3429146 (+)
LOC122342808 NA non-coding downstream 57959 3439131 ~ 3439654 (+)
LOC122342809 NA non-coding downstream 59740 3440912 ~ 3441500 (+)
LOC122343393 si:dkey-234i14.9,igl4v8,LOC107687028 non-coding downstream 65886 3447058 ~ 3447574 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 4895 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 193659 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1316117 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1523557 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1638694 1670512 ~ 1672959 (+)
G25514 NA other downstream 100457 3481629 ~ 3502094 (+)
G25551 NA other downstream 356330 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 848457 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 851736 4232908 ~ 4235244 (+)
G25958 NA other downstream 1168991 4550163 ~ 4628899 (+)

Expression


Co-expression Network