ppm1ab (ppm1ab,LOC107718411,LOC107697300,LOC107701489,LOC107589071,LOC107560378,LOC107743982)


Basic Information

Item Value
gene id ppm1ab
gene name ppm1ab,LOC107718411,LOC107697300,LOC107701489,LOC107589071,LOC107560378,LOC107743982
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16987308 ~ 16993364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236872.1
CCGGGTCCCAAACAAACCCATCCGcgcggagagagagaggcgcTCTGAGTTCGAGGCTCCGGTAGCCCCCCCTCGGGAAAACAACGAACCGGAGCCAGAAATGCCCCACCGCCCAGCTGCGGACCGCCTTAACGGGCTCATGTGATGCCTTTCAtatgtttatagttttttttttattttcgttAATCGATATCTGGCTGTTTTGGCGTTAGTTTGCGTGCTAATAGGCTAGCCATCGATTGATGGGTGTTGTGTGACCGCTGGTTTGTAGTGTTTGGTATCCGGCCCAACATACTGATATTAAGGCTCTTACTCGCGGCTTTGGTGCCTCGGTGTTTGTTCCTCCAGCGGAGACCGCGAAGAAGCTGGagCAAAATAAGAAGAATGGGTGCGTTCTTAGACAAGCCAAAGATGGAGAAGCACAATGCTCACGGGGAGGGGAACGGCCTGCGCTATGGACTCAGCAGCATGCAGGGATGGCGTGTGGAGATGGAGGACGCACACACAGCTGTGATGGGGCTGCCTTACGGCCTCGGCCTGTGGTCTTTCTTTGCCGTCTACGATGGGCATGCGGGCTCTCAGGTTGCTCGTTACTGCTGTGAGCATCTGCTGGAGCACATCACCAGCAACCCGGACTTCAGGGGAGGCTGCCCAGGGGGCGGGGACTCAATTAACGCCGAGCCCTCCGTGGAGAGCGTGAAATGCGGAATCCGCACGGGCTTCCTGCAGATCGACGAGCACATGCGGGTCATGTCCGAGCGCAAGCACGGGGCCGACCGCAGCGgttccacggcggtgggtgtgATGATTTCCcctcatcatttttatttcatcaattGCGGCGACTCCAGAGCCTTGCTGAGCCGCAAGGGTCGCGTCCACTTCTTCACCCAGGACCACAAGCCCAGTAACCCCCTGGAAAAGGAGAGAATCCAGAACGCGGGTGGTTCTGTAATGATCCAGAGGGTCAACGGCTCTCTCGCCGTCTCGCGTGCTCTCGGTGACTTCGACTATAAGTGCGTGCATGGGAAAGGCCCCACCGAGCAGCTGGTGTCCCCGGAGCCCGAAGTGTACGAGATCGAACGCTCTGAGACTGATGACGAATTTGTGGTGCTGGCCTGCGATGGCATTTGGGATGTCATGGCCAACGAAGAACTGTGTGATTTTGTGCGTTCCCGCTTGGAGGTGACGGAGGACCTGGAGAGAGTGTGTAATGAGATCGTGGACACATGTTTGTACAAGgGTAGTCGAGACAACATGAGTGTGGTGCTGGTATGTTTTCCCGGTGCCCCAAAAGTCAACCCAGAAGCCGTGAAGCGAGAGGCGGAGTTAGATAAGTACCTGCAGAACAGAGAGGGTGGAGCATGTAAAAAGgcgaataaataaaaaaaatatgacaatgaCTAAGAGAGAGTTATAGAACGTGAGCATTCTTACTTAATTAGGTGAGTTTCTTAGATGGCAGTTCACACTTGCCAATGAAGTATACGTTACAGTTAACGTAAAGTTTCCAATTAACGAATCCCCATATTGGAGAGGAAAGACTCACTGGTACTGTATTAGCACAGTTAGGACTATTCAGGATCAATTTTAACCAGAGAGAAATACAGTGTGAATTTATTTGAGCTTATATTGATAATTAGAGGCCTTTATTTATTGCCAATATTAAAAAGCACTTACACAATTTAGAGGTAACCTTTAGCTTTACCAGAGGTTTTATTGTAGTGTATCCGAGAGTCCTACGCTCCAGCGCAAATTACTTGGCGTATTATTAGCTACTAAGTGATGGTGAGTAAGTGCAATTGTAGATTAGGAAAAAGGAACGATGAAAACCCAACATTTGGCTCTGCACTTTTTCATTAAACGCTGCTATACTTAAAGGCATCTTCTAATAATAAGAGAGAGACCAAATTTGAGATCTCAGTTAGaatataatatgtttgtgtTCGAAGCAGAATTAATACAAAGTGTAGTTTTGCGTTCTGTTCGTGACGGTGCGTTCTTCAGATAGTTGTATTCATCCACTTGTACAAGCATGTGTTTAAGTCTGGCACCCGTTTCATTTGCATCTTTCTGAAAAGTCGTTCTAAATGAGTGAATGTCAGGCCTCCACTGCTGATTACCTGAAATTGTAGCTGACACTGCTGTACGTGGCCTGATGGTGCAGTTTTGTGTCTACAGCAATGGCCATGAGCATTTTAATCTGCATGATTCCTGTTCTGTAATGAGGAACATTGTTGCCTTAGTCCTAATTTACAGTGACTACCTTGATTAGAATCGATAGGTTAGCACTTGGTGTCCGACCCCAACTGCTTGGAAGAGTAAAATTAAATCCAGTGGACACATGGTACTGAAAGCATGCACTGTACCGCTAGCACGATAAGTTGTGTACACCTCCTGCATGTACGctacattaagaaaaaaaaaaaacagggataGATCTTATTTAGAATTAAGTTGGTCTGATagttttatactttgtacagTATACATTTGTAACCCACGAGGAACAGCTTCCGTGTGAACTGAACACAGTATTGGAAAGATCGCGTCGATGTTTTACAATCCTCTCTGAGTTGTTTACTACTTGTTGCCTCAAACTGACGCTTTGTCAATCCTCTGGTTTGTCTGTGTAACTATTAATTCGTTTAGTTAGGAAATCCTCGGTGCATAGAGTGGGATTCAGCCTACCTGCACGTTTTGGGATGTAGATGCTTGTTGGTACAATGACTGAGCATTTATAGTACAGCGGTACACTGCTTTTGTGTCTGTAAAACCCAACAAGATTTGGAGATTCTGGAAGCTAAGTCTCATTTAATTGTGTATTTGAACCCTTTAGACACCTCCAAAGGAAAATTTACTTTCCCACCTTTCATTTCAAACCCACGGAAACCCATCCATTAAAAACTTTGGATCCcattaatgttgaaaatatttaaaatcggctaatattttaatatatcgtcttataaataataataaaaaaaacccatcatttTGAGGTTTGTAATAAATtgacacttttcatttttgggagacattttaaataaggcACGATGTAATGCAATCAGTCAGAAAACGGTTCCCACTGTTTCAGAATGTGAAAGTCACCCaatcacccaaaagtgaaaattaccccatgatttactcgcCCTCGAGTTGTTTTACTCAAATAATCCAAATAATCAGCAAGTAATCAAACAGTTGAAATAAAGTATCTGTCAAGAGTGTGTTATTGTCCCCATAAGGTGggacatttagtgtaaatagccgCTGTCTAGTTAAAATGTTTGGATGAACTATCTTTTTAAATCTGGTCAATTTTCGGTGTGGACAGGTCTACCAGTGCACCACAAGAAAAAATAGTTTAGTGTCAGTTTAGTTGCGCCTTGTTACAGAAACTTAGTTTTGCCTGCATTAGTAAAGCATGGGGTTCTTTCTCTTTAGGTACATTTTCCCTTACAACCAAAAGATCCCACACGTTCTTCACGTCTTTGTATTGCCAGGAGAAATATGTTAGCTTTAAGATGTGTTTAACCGAATGAATAACATAGTGTGCCTGCTCTAAGAGAGAACTCTTGAGATTAAAATGATTGTAGGTCATTCCTGTACCATATCAGTTTCGTTTCGCTTGGGTTTGTTGTTGTATCTCCTCACTGTCTGACACGGCTCGATAATCCACTGTTTATTAAATTAGCCTTAATTATTTTCTTCCATAATAGCACATCTGAGATCTTGTACGCTTCGGTGAGACATGTAACGTGTTTGTAGCCTGACAGGTTTTTCTGGGAGAGCCTTTAATTGTGCCTACGAGTGATTCTATGGCCAGTTGTAGCATTCAAATGAACTTTCTAAGTCTTGTAAGGtggttttgttcgttttgtaacattattctACTCGAGCGTCATTTTAGCTTGTGCATTCAGTAGCACATTTGGCCCCTTACAGCAAGTGCCATACGAGTGATTTTAAACCATTCACCTGAGATTATTGCTGCACAAAGCACAACCCAAACCCCTAATGAGTCAAACGTGGGGTGGAAATATTGCcttacagaaaaataaagcagGCATTAAATGGGCCATTTAAGTATTGTAGGAGATTTGCCTTGATTTCGAACACTGTAGCACCATCAAATTGAGATCTAAAGGGAAAGAAAATGTCAACTGTAAGTCTGTCCTGTTCATTGGATTTCGATCGAAGCAACCGACTGCTAATAAAAAAGGCCTTTGTAACGCATTGGATAACTTCAAAATGTATCTTCTGGAGTGTTAATCAAAAGGGCAAACGGAGCccatttactgtcatttacttGCGCTGTGTTGTGCCGTTGGTCCCTGTGTGTCACTTCTGTCTTTACCTCTCAGGTCCAAACTGACAAGCAACAGAGGAcactatttatttgaattatttattgtctttatgGTATTTTACCTCTTTTGAATGAAACTGTCCATGCATTCCATTTTCTTTAGCCAAATAAGCACTACTAATGCAATGAAAAGCTTCTATTCTTTTCTTcttgtatttattgttatacaTCCTCGTCACGAATGGTCCATGTGAACCGAAAGCTACGCGAGTTAAAACGCATCATGTCTTGGGTTCCTCTACACTAAGTAGTTTCTTCACATGCTGTTCACGCTTGTTCACTATTCTGTCAGAGTAGATCGGTCCAAGGTTGACGATATGTAAGGGTTACAATCTATGATCGGTCCTTTCTTAACCCAACAGACTGTTTGCGTCTGTGTTTGTTCAATTTTACCTCTCAGAAGGTAACAGTTTTATAAAGCTCATTTTGGAAGATTTTTCAACTACAATTTCATAGAAAAGTATTTCAATATTAGAGGGTGAGCACccaatattttctttctttagtttttatttttgtacattagcACCCGGGTATTAGCAATGTAGACAAACTGTGATCTTGTCATTCTTGGCTGTCAaatatgaatcaaataaaattatttacgGAAA

Function

symbol description
ppm1ab Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1A (protein phosphatase, Mg2+/Mn2+ dependent 1A).

NR:

description
protein phosphatase 1A-like isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236872.1 True 4983 mRNA 0.43 3 16987308 16993364

Neighbor

gene id symbol gene type direction distance location
six6b six6b,six6,LOC107589092,LOC107743981,LOC107697293,LOC107701490,LOC103035477,LOC108257662 coding downstream 29234 16955520 ~ 16958074 (-)
hif1ab hif1a,LOC107589062,LOC107743977,LOC107563689 coding downstream 105913 16868461 ~ 16881395 (-)
snapc1a LOC107743976,LOC107697295,LOC107589064 coding downstream 119323 16864505 ~ 16867985 (-)
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding downstream 122885 16852999 ~ 16864423 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding downstream 136152 16840705 ~ 16851156 (-)
ckbb ckb,ckbb,LOC107560383,LOC107755234,LOC101477834 coding upstream 92098 17085462 ~ 17089500 (-)
LOC122342663 NA coding upstream 130543 17123907 ~ 17130265 (-)
btbd6b btbd6b,LOC107589075,LOC107755235,LOC107718408,LOC107560384,LOC107701487,LOC107683969 coding upstream 144701 17138065 ~ 17143280 (-)
LOC122343418 LOC107683962,LOC107701452,LOC107755208,LOC107601897,LOC107568118,LOC107718425 coding upstream 417654 17411018 ~ 17482755 (-)
daam1b daam1b,LOC107701451,LOC107755211,LOC107718401,LOC108412077 coding upstream 494896 17488260 ~ 17552346 (-)
LOC122342882 NA non-coding downstream 62343 16908209 ~ 16924965 (-)
G29021 NA non-coding downstream 285637 16701068 ~ 16701671 (-)
G29012 NA non-coding downstream 377309 16609636 ~ 16609999 (-)
LOC122342602 NA non-coding downstream 436304 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 441687 16544954 ~ 16545621 (-)
G29143 NA non-coding upstream 45463 17038827 ~ 17040834 (-)
G29179 NA non-coding upstream 225787 17219151 ~ 17219453 (-)
G29212 NA non-coding upstream 355925 17349289 ~ 17349506 (-)
G29273 NA non-coding upstream 560398 17553762 ~ 17553964 (-)
G29388 NA non-coding upstream 649015 17642379 ~ 17642637 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other downstream 87013 16886153 ~ 16900295 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other downstream 278348 16707774 ~ 16708960 (-)
G28898 NA other downstream 1054444 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 1375733 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1959645 15024587 ~ 15027663 (-)
G29135 NA other upstream 13563 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 124979 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 643659 17637023 ~ 17638742 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other upstream 741242 17734606 ~ 17744543 (-)
G29417 NA other upstream 741986 17735350 ~ 17736274 (-)

Expression


Co-expression Network