slc35e3 (slc35e3,LOC107710682,LOC107737854)


Basic Information

Item Value
gene id slc35e3
gene name slc35e3,LOC107710682,LOC107737854
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12014586 ~ 12018965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236875.1
GACACGTCCCTCATTCGCGAGCGTCACGTCGCGTTTGTATGCGTCACGCGCGTGCGTTCAGTCAGCGGTTTGAGTGAATGCGGCTCTCTGTGCGGGACAGCCTTATAATGAACGCTGCAAACCGCTTTCGCGCACTCAGTCACGGGACGCGGTGGAACTTTACGTCCCTCTGCCGATGAAGTGCCAAAGCGGCCCCCCGAAACTCTTCCTCCAGCTGTATTTGCCTCTAAAAGCGCGTCTGAATTAGCTCGGCCATGGCGACGCGGCTCTCGGACTTGTTTGGAAACAGCCGGATAGTTGCTGGGCTGCTGGTCAACTTGCTGTCGTCGATCTGTATAGTGTTCATCAACAAATGGATCTACGTGCACTACGGCTTTCCCAACATGACCCTGACGCTCATTCATTTCGTCGTGACATGGCTGGGGTTGTTCGCGTGCCAGAAGATGGACGTGTTCTCCCCCAAGAGTCTCAGACCTTCGAAAATCGTCCTGCTGGCGCTGAGCTTCTGCGGGTTCGTGGTTTTCACCAACCTGTCTCTCCAGAGCAACACGATAGGAACCTATCAGCTGGCCAAGGCCATGACAACACCCGTGATCATAGTCATCCAGACCGTGTACTACAGGAAGACGTTTTCCCCGAAGATTAAACTGACTCTGgtGCCGATCACTTTAGGGGTGATACTGAACTCTTACTATGATGTGAAGTTCAATCTTCTGGGGATGATCTTTGCCACGCTCGGGGTCTTCGTAACCTCGCTGTATCAAGTGTGGGTTGGCGCCAAGCAGCACGAGCTCCAGGTGAACTCTATGCAGTTGCTGTATTATCAAGCACCCATGTCTTCAGCATTTCTCTTGGTCCTGGTGCCTTTCTTCGAACCCCTGACCGGAGAGGGCGGTATCTTCGGCCCCTGGTCCTTTCAGGCCCTGGTCATGGTTCTGCTGTCTGGTGTTATTGCCTTTCTGGTCAATCTGTCCATTTACTGGATCATTGGGAACACGTCCGCTGTCACCTACAACATGTTCGGACACTTCAAGTTCTGCATCACGTTGCTGGGCGGGTACGTCCTCTTTCAGGACCCCTTGTCCTTAAACCAAGGTCTGGGCATCCTCTGCACCCTCAGTGGCATCCTGGCGTACACCCATTTCAAACTGGCAGAGCAGGAGGAGGGCAAGAGCAGGCTCACGCAGAGGCCGTAGGAAGCCAGCGTTCTTCAGGAACAGGCAGCGATGAAGAAGACTTAACCAAACACAGACTGGAAGGAATCGGAGGCCTCGATCATGGCATTTCAATCTTTTTAAGAGTTCCATTTTTATTCCAAGCATTcgatatttgcaaaaaaaaaaaaagaaaagtgctgTTTGAGAGAACacctattttctttttcttttttttttactttgtaagTGTTATTTAATGATGTATTTTTCGAACGGTctgtacaaaaataaagcattttatagAAAGTAGCCCGTGAACGGAATCTAATCTTGTATTGAGTCTCGTCGTGACTTTTAGGACAAGGGTCACTGCCTGCTTGGCAAACAGACTTGAGTATCTGTGAAATGGTATGTCGGTCATTCGTTGAGTTCGTGATGAGGGCTTTTCAGCTTGTTTTCCTCTTTTGCAACGAGCCGCTTAAACATCAGTCACATTCCAAAGTCCTGTCTCCAGACCAAGTCTAGATGTTTTGCGGCTTTGGTGTGATTTTTACTCATTTTGAAAAGGATGTGGTAAACAGATGCTGCCGTTTGTGCCTCTTAAAGACGCGTTTCGCTCAAAAACCACCTGTTTCATGTAACATATGTTTtgaatttctaaaatgttttattcccCATGCAATTAAATTTGACATCCCTTGAATTGGAAGGAGACTTCTTGTCTCA

Function

symbol description
slc35e3 Predicted to enable antiporter activity and nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E3 (solute carrier family 35 member E3).

NR:

description
PREDICTED: solute carrier family 35 member E3 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15285 SLC35E3; solute carrier family 35, member E3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236875.1 True 1883 mRNA 0.48 5 12014586 12018965

Neighbor

gene id symbol gene type direction distance location
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding upstream 230779 11740732 ~ 11783807 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding upstream 361828 11618061 ~ 11652758 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 408015 11602201 ~ 11606571 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding upstream 439349 11573747 ~ 11575237 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 687893 11324633 ~ 11326693 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding downstream 1656 12020621 ~ 12027468 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding downstream 54738 12073703 ~ 12147286 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 151162 12170127 ~ 12267756 (+)
itih5 itih5,LOC107675976,LOC107555826 coding downstream 1146775 13165740 ~ 13175798 (+)
sfmbt2 sfmbt2,LOC107675978 coding downstream 1171639 13190604 ~ 13227324 (+)
LOC122342766 NA non-coding upstream 22702 11989871 ~ 11991884 (+)
G28077 NA non-coding upstream 28400 11985352 ~ 11986186 (+)
G27862 NA non-coding upstream 228734 11752668 ~ 11785852 (+)
G27851 NA non-coding upstream 325646 11685713 ~ 11688940 (+)
G27850 NA non-coding upstream 329450 11684883 ~ 11685136 (+)
G28094 NA non-coding downstream 138 12019103 ~ 12019422 (+)
G28095 NA non-coding downstream 531 12019496 ~ 12019766 (+)
G28104 NA non-coding downstream 129173 12148138 ~ 12155255 (+)
LOC122343506 NA non-coding downstream 318980 12337945 ~ 12340101 (+)
LOC122342723 NA non-coding downstream 441721 12460686 ~ 12462227 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 199281 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 323457 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 598359 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 680130 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 1305639 10707132 ~ 10708947 (+)
kin kin,LOC102791470 other downstream 1131771 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1286704 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1304323 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 1386964 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 1863929 13882894 ~ 13961098 (+)

Expression


Co-expression Network