pgm3 (pgm3,LOC107579473,LOC107656266,LOC107658887)


Basic Information

Item Value
gene id pgm3
gene name pgm3,LOC107579473,LOC107656266,LOC107658887
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1965852 ~ 1972410 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236893.1
GGTGAAGCTAAACTGGTTTCATTGAAATAAGCATCAGGTTCCCGAGTACGTCAGGAAAGGGCGTGGCGACGTGCGTCATCGAAGCCACGTAATCCGGGAAGTAGGAAGTGTCGCCCTTCAGTCGCAAAAACAGCAGAAGATGGCTGAGTTTGCGGAAGTATCTCAAAAGTCCAAGCTACATCCGAAGCCGGAGGGCCTTACACTGCAGTATGGCACAGCTGGGTTTCGCACTCATGCCAAACATCTGGATCACATCATGTTCCGCATGGGCCTGCTGGCAACTTTGAggtccaaaaaaactaaatccacCATAGGAGTCATGGTGACTGCCTCTCATAACCCAGAAGAAGACAATGGGGTGAAGCTGATTGACCCCATGGGGGAGATGGTGACGGCGGTTTGGGAGGGATACGCCACACAACTCGCTAATGCCGAGCAGGACTTTCTTCTCAAAGAGCTAAAGGACGTTATTGGGAAAGAGGACATCGACATGAGCGAGCCCGCAAGCGTATACGTCGGCAAAGACACCAGaccGAGCAGTGCTAGTCTCTCTCAGGCTGTACTGGATGGCGTTTCCAGTTTGGGTGGCAAAACTCATGACTATGGTCTGGTCACCACTCCCCAGCTACATTATATGGTGTGCTGCTGTAACACGCACGGCTGCTACGGCAGTCCTACTGTTGAGGGCTACTACCAAAAACTCTCACAGGCTTTCCTTCAGCTTACACAGAACGCTTCAAACCGCACTGATGATCAGAAGAGGCTTCTGGTGGATGGAGCCAATGGCATCGGTGCACTGAAGATGAGAGAAATGGAGCCGTTTCTTCGCTCCGAACTGCAGGTGGTGCTTTCGAATGACGGCAGTAGCGGCAAACTCAACCACATGTGCGGAGCGGATTACGTCAAAGTCCAGCAGAAAGCACCTCAAGGTATGAATATGGGAGAATGTGAGCGCTGCTGCTCGTTTGACGGTGATGCAGATCGCATTGTTTACTATTACACCGACTCTAAAGGCTGCTTTCATCTGCTGGACGGAGACAAGATCGCTACTCTCATCAGCACGTACCTCAAAGAGCTGCTCACACAGgcagGGTTGAACCTGCAGATTGCTGTTGTTCAGACGGCGTATGCTAATGGGAGCTCAACTCGCTACCTGGAGGACGTCATGAAGGTCACTGTATGCTGTACAAAAACAGGAGTAAAGCACCTACATCATGCAGCACAGGAATATGATATTGGAGTTTATTTTGAGGCGAATGGACATGGAACTGTTTTGTTTAGCAAGGCGGCACAGAAACAGATCCAGGAGCTGGTGAAACACTCAAACACAAACGATGAGAGAAAACAAGCGGTGAAACTCCTAGAGAGCACCATCAATCTGATCAACCAGACAGTGGGAGACGCAATCTCTGATATGCTTGTGATTGAAGCGGTGTTGGCCATCCGAGGGATGTCAGTGCAGGACTGGGACGAAATTTACACAGACCTGCCCAACCGCCAACTTAAAGTCAagGTGTCAGACCGGCGCGTTATAGATACGACAGACGCAGAAAGGAAAGCCGTGACTCCAGAGGGTCTGCAGGACGCCATCGACTCACTTgttaagaaatacaaaaacgCTCGGTCCTTCGTTAGACCTTCTGGAACTGAAGATGTGGTCAGAGTCTATGCTGAGGCTGACACACAGGAAAGTGCTGATAGTCTGGCTCATGAGGTCAGTCTGGCTGTGTATCGTCTCGCCGGAGGAGTCGGAGACGAGCCAAAACCTTTACGCTGATCAAACATGCATGCAAGCGGCGTGTCTGAGTCCGTCTGGTGAAATGTATGAATActgtaaatgtacagtaaacTAGCACTTGTtgcacaaacaaatgttttgggaGATGACGAATGTTAAAAGTTTAGTCTTTGTACTGTATGAGTGACCAACAATCTTTATAAATGAAAGTTTGTGATTGTTAAACTGTGACCTGTGTGAACCTTTGTTTACAATAAtttcattacagaaaaaacaagttttgcttttttaattttatctacCATTTTGATTATAGAAGATAATATCGTTCAATAGTTTGGGTTAAggtatttgaatgtttttgaaagaagtctcttattgtcaccgaggctgcatttatttgataaaaatacagtgcaaacagaaatattttgaagtatacaatttaaatattgttttattttaatatgtaatttattcctgttatgtCATATTTCAGGATAATTTCTCCAGtcgtcagtgtcacatgatctttcggAAATCAATATATGCTTAAGAAACTTTccttattatcaatgctgaaaacagttgtgctgattAATAGGTTTGTGAAAACAAATTCCTTCTCCAGGACTCTGAGGAAAAGAAAGT

Function

symbol description
pgm3 Predicted to enable phosphoacetylglucosamine mutase activity. Predicted to be involved in UDP-N-acetylglucosamine biosynthetic process and hemopoiesis. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in blood; intermediate cell mass of mesoderm; and notochord. Human ortholog(s) of this gene implicated in immunodeficiency 23 and teratoma. Orthologous to human PGM3 (phosphoglucomutase 3).

NR:

description
phosphoacetylglucosamine mutase

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006048 UDP-N-acetylglucosamine biosynthetic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0004610 phosphoacetylglucosamine mutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01836 PGM3; phosphoacetylglucosamine mutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236893.1 True 2389 mRNA 0.46 13 1965852 1972410

Neighbor

gene id symbol gene type direction distance location
ccnc ccnc,LOC107656373,LOC107583980,LOC107579661,LOC107726029 coding downstream 5809 1954054 ~ 1960043 (-)
faxca faxca,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC104925628,LOC108279701 coding downstream 12336 1946529 ~ 1953516 (-)
tmem63a tmem63a,LOC107726051,LOC107583960,LOC107658879,LOC107710129,LOC107656375 coding downstream 48702 1907494 ~ 1917150 (-)
vegfab vegfab,LOC107658905,LOC107726022,LOC107710132,LOC107656377,LOC107579754 coding downstream 103658 1851243 ~ 1862194 (-)
tigarb tigarb,LOC107725934,LOC107710107,LOC107579711,LOC107583984,LOC107658904,LOC107656422 coding downstream 257055 1705449 ~ 1708797 (-)
foxm1 LOC107658881,LOC107710101,LOC107656265 coding upstream 6697 1979107 ~ 1985058 (-)
slc5a8 LOC107710085 coding upstream 23032 1995442 ~ 2000075 (-)
arl1 arl1,LOC107576237 coding upstream 49915 2022325 ~ 2024209 (-)
tnnt2e tnnt2e,LOC107658902,LOC107725993,LOC107656364,LOC107710083,LOC108425385 coding upstream 60413 2032823 ~ 2042861 (-)
tmem168a tmem168a,LOC107658875,LOC107726047,LOC107710117,LOC107656353 coding upstream 443256 2415666 ~ 2423463 (-)
G25190 NA non-coding downstream 62391 1903185 ~ 1903461 (-)
G25188 NA non-coding downstream 67595 1896886 ~ 1898257 (-)
G25185 NA non-coding downstream 120452 1845129 ~ 1845400 (-)
G25182 NA non-coding downstream 134333 1831171 ~ 1831519 (-)
LOC122342506 NA non-coding downstream 136264 1825186 ~ 1829588 (-)
G25240 NA non-coding upstream 19582 1991992 ~ 1993756 (-)
G25277 NA non-coding upstream 59831 2032241 ~ 2032656 (-)
LOC122343450 NA non-coding upstream 134354 2106764 ~ 2118325 (-)
G25298 LOC107549254,LOC107563058 non-coding upstream 190120 2162530 ~ 2163319 (-)
G25299 LOC108267243 non-coding upstream 191016 2163426 ~ 2163708 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other downstream 63189 1898403 ~ 1902663 (-)
ccdc167 ccdc167 other downstream 311026 1653591 ~ 1654826 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other downstream 347554 1609360 ~ 1618298 (-)
selenoo2 selenoo,si:dkey-14d8.2,LOC107579362,LOC107711485 other downstream 361162 1594284 ~ 1604690 (-)
LOC122342802 LOC107711465,LOC107656235 other downstream 379663 1580480 ~ 1586189 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other upstream 70543 2042953 ~ 2088579 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other upstream 118941 2091351 ~ 2097801 (-)
dock4b dock4b,LOC107656358,LOC108425388 other upstream 327225 2299635 ~ 2375716 (-)
LOC122342907 NA other upstream 499874 2472284 ~ 2473068 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other upstream 1027472 2999882 ~ 3012214 (-)

Expression


Co-expression Network