ngs (LOC107583969,LOC107725974,LOC107658888,LOC107579501,LOC107656267,LOC107710103)


Basic Information

Item Value
gene id ngs
gene name LOC107583969,LOC107725974,LOC107658888,LOC107579501,LOC107656267,LOC107710103
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1960862 ~ 1965535 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236898.1
TGACACGGTACAGGCTACTTTCAGTCTCCAAGTTTTCGGACAGTTTTAGTGCAGAGAATTTCATTAATGAGGCTTGCCATGCTCATCGGGAAAGCTATTTTTACCGCGGTGCATCTCTTCGCGGTGTCCCGTCAGACAGCTGACTCTGTGTCAGACGGAGGTTTGACATTCCTCCTCCGGACAGGACAGCAGGTATAAAGCCCCGTCACCAGGGAACGGGACACAACGCTCCTGCAGAGGAACCAGCAGCTTCACCATGAGTCACAGCCCAGAGAGGATGTCTTCTTACCGCCGTCACTTCGAGGGTGGCCTGACCTCGTCCTCCACGCTTCAGGTGCGGGTCTCCAGCCCTTCGCCCACCCGAGGAGCCGCCCGCCACCGCTCCGCCAGCTACTCCCGCAGGGCGCTCTCCGGGTCCCGCAAATCACGCATGACCAGCAGTGTGAGTATGGGAGCGCTGTGTCTGGGCATGGGTTTGGGGGTAGCTGGAGGCGCGGTGGATCTGGACGCTGCGGCCGCTGAGAACCAGGCTTTCCTCAGCACACGCACCGGCGAGAGAAAGGAGATGGTCGCCCTCAACGACCGCCTGGCTGTATACATCGAGAAGGTGCGCTCTCTGGAGCAGAGCAACAAGCTGCTGGAGGCAGAAATCGATGGCATCAAGAGCCACCACGTGAAGCCGTCCGGTCTGCGTCTGCTCTATGAGGAGCAGCTGAGGGAGCTGAGGAGGATTGCTGACCAGATGAAAGTCCAGCGGGATCTGGCGGTAGCAGCAAAGGACGCCATGGCAGGTCAGCTGGAAATGCTGAAGGTGAAATACGAGGAGGCCGTGGAGGCCAGGAAAAAGGCAGAGCTTGAAATTGAAGCCTTCAGACCGGATGTGGATGCGGCCACATCCGGCCGCATTGCCTTGGAAAAACGACTGGAAAACCTGGAAGTGGAGCTTGAGTTCCTGCAGAGgattcacaaaaagGAAATCGAGGAGCTGATGGCTCAGATTTACGGATCTGTGGCTAAAGTAGATGTGGCCTTCGCTTTGCCTGATCTGGCATCCGCTCTCAAACAGATCCAGGCTCAATATGACAGTATCGCCGCCCAAAACCTGCAGGAGATGGACGCTTGGTATAAAGCGAAGTTTCAAGATCTTAACAAAGCAACATCACGGCACGTGGAAACAGCGAGGAGCCTCAGAGAAGAAATCACAGCTTACAAGAGAGAGATTCAGAATAAACAGAGAGAACTGGATGCTCTTAAAAACAGGAATGAAGCACTGCTGCTCCAGATGAAGGAAGCACTGGAACGATAcaaaaaagaggaggaggagctaCAGATCCGTATCGAGGCTGCAAAGGATGAACTGAAGTCTATTAAAGGGAAGATTGCACTTCTGCTGAAAGACTATCAGGAACTGCTCAACGTGAAGATGTCTCTGGAGATTGAAATCACCACATACAGGAAGCTGATAGAGGGAGAAGACAGTCGCTTGTCAGACATGGTGAGCGGTCTGTCTCTCATGAGCGTGAGCGCAGGAGCCGTCAACAATGTTTTCGGGGCGGCAGCAGCCCACAGAGCAGCGCTGAGCTCCGCCGTCTCTGAGAAGATGATCTCCAGCAGCACAACAGTCGATCACAACCATCACGAGTCTGTGGAGGAGTTCACTCACGAGCAGGCCGTAGAGATGACGGAGAGGAAGACCGTCCTCATTAGGTACAAGTACACCACTCCAAAACAATACATCTAAAAGTCATGGGTGTGAACGTTTCTTAACGTTGTTGTAGAAGCTAATCCATCTCTCTTTGTTTGCAGAACAGTTAGGACAGATGAGGAAACGTTTCAAAGTGACACACAAGAACGCACCATCACTATCTCTGGTGCCGCAGATGAGAACGATTGAATTAAACCCTTGAATTAGTCATGATCTCAATCCAAACTTCCATATCAAAGTCTATTCATTTAGAGTTCTTGTTGCTCAGATTTTACATTCCATTTTCAAAACCTGTGACGAACCAAAGTCTCCCAACCTTTGCTACCTTCTGTGTGCTTTGACTAAACTTCTGTAACTGGGTGTATTAAGCGTTTAACCACTTGTCAACTGATTCAACTCAAATAAAGTTTGATTGCAT

Function

NR:

description
glial fibrillary acidic protein-like

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process
GO:0060035 notochord cell development biological_process
GO:0005882 intermediate filament cellular_component
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236898.1 True 2123 mRNA 0.51 10 1960862 1965535

Neighbor

gene id symbol gene type direction distance location
pou3f2a pou3f2a,LOC107726028,LOC107583975,LOC107656268,LOC107579586,LOC107710088,LOC107658894 coding upstream 15265 1940742 ~ 1945597 (+)
mrps18a LOC107583989,LOC107710130,LOC107656376,LOC107736677,LOC107581188 coding upstream 62605 1896161 ~ 1898257 (+)
LOC122342504 si:dkey-14d8.7,LOC107583991,LOC107658912,LOC107725942,LOC107656269,LOC107710135,LOC107601130,LOC107579872 coding upstream 135800 1823635 ~ 1825062 (+)
mapk12b mapk12b,LOC107656379,LOC107710136,LOC107579544,LOC108442322,LOC103035956,LOC108279513 coding upstream 138112 1818023 ~ 1822750 (+)
mapk11 mapk11,LOC107725929,LOC107656380,LOC107579565,LOC107583972,LOC108442323,LOC103035641 coding upstream 144384 1809292 ~ 1816478 (+)
si:ch73-352p4.8 si:ch73-352p4.8,LOC107726064,LOC107710127,LOC107656372,LOC107583968,LOC107658734 coding downstream 7739 1973274 ~ 1979290 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding downstream 20033 1985568 ~ 1987174 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding downstream 21941 1987476 ~ 1989937 (+)
usp18 LOC107725967 coding downstream 24970 1990505 ~ 1993588 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding downstream 35554 2001089 ~ 2022310 (+)
G25193 NA non-coding upstream 51935 1907200 ~ 1908927 (+)
G25192 NA non-coding upstream 54756 1905830 ~ 1906106 (+)
LOC122342405 NA non-coding upstream 58976 1899896 ~ 1901886 (+)
G25086 NA non-coding upstream 129894 1830678 ~ 1830968 (+)
G25030 NA non-coding upstream 171586 1788631 ~ 1789276 (+)
LOC122342875 NA non-coding downstream 63261 2028796 ~ 2033049 (+)
G25249 NA non-coding downstream 83689 2049224 ~ 2050952 (+)
G25288 NA non-coding downstream 141228 2106763 ~ 2107094 (+)
G25300 NA non-coding downstream 202198 2167733 ~ 2167997 (+)
G25309 NA non-coding downstream 317755 2283290 ~ 2283777 (+)
LOC122342451 NA other upstream 172766 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 287903 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 629019 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 669638 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 711693 1245578 ~ 1249169 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 28705 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1134202 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1153980 3119515 ~ 3306758 (+)
G25514 NA other downstream 1516094 3481629 ~ 3502094 (+)
G25551 NA other downstream 1771967 3737502 ~ 3738594 (+)

Expression


Co-expression Network