plxnc1 (plxnc1,LOC107664865,LOC107590996,LOC107744945,LOC107695856,LOC107725519)


Basic Information

Item Value
gene id plxnc1
gene name plxnc1,LOC107664865,LOC107590996,LOC107744945,LOC107695856,LOC107725519
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9301481 ~ 9316243 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236915.1
CATCTGCTTCTTTCATTTCTATCCACTTCACGAGTGGACGCGTCTGAGCGCATTTGATCGCTGTGACAAGATCTCGACGCTTCAGCGGCTCGTCAGGTATGAAAGATGAGAAGACACTTTCTGGGAGTGCTCGTACTTTTGAAATACTGCATTTGCGGTGATGTGGTGAACTTTGATGGAGACATTAAGGACTTTGTAGTCGGTAACAGTAAGTTATTTGTTCTTACTGAACATCGACTGCATCAGATGAGACACGATCTATATGAGGAGAAGAGCAAAGACATCACTGACGTCCCTCAGAATAACAGAGTCAACATTCTGGTGCCTTTTGATGAGAACCGCACCCTGATAACGTGTGGGACTTTTAAAGAGGGACATTGTGAAGTTCTTGATATAAATGACATTACGAACAGTATTTACAATGAAAATGGTGTACCGCTAAAGTcacaacagaagaaaattgTTGCCTTCATAGCCGGTAGATTCCTTTTggttggaaaaaaagaagacaacGCAAAAGACAGGTATTCTGTTGTTAGTTTGGTGAACACTTTACAGACTCAATCAGGTGGGATTTTCTCAATATCAGCAGATGGATCAGAGGCCATCATTCAGAGCACAGTGAGAGATGTGGAGTTTGTTGATGGATTTCAGAGAGTTTCTTCCTCAGAATCCTATTTGTTTCTCAACGCAGAGACTGACTCTGGAAGGAAAGTGATTGTCTTGTGGATGAACAGCTGAAGTAAAAAGATAGACATAATCAAATCTCTCCGGTCTTCAACGATACGATGCTGCAGTGATAAAACTCGTCCAGTGGTCGTCGCCTCCACCGTTATTCCCTCAGAGACTGATGTTATTTGGGCAGGTGTGTTCAGTTCACAGGATCAGCAGGATCCGGAGAACAGCGCTCTGGCTCTGTACGACATCAGTAAAGTTCAAGGCAAAGTGAAGGGCTTCTGTGCTAATGGTGAAAAACCTTGTGGATCTGAGagtgGCAGTGAACTTCATCCTCTCTCTGTGGTGTTTAAGTACAGCTCAATGTCAGCAGTGACAGCAATGAGAGCTGGATCCTGGACTGTGCTGTTCATAGGAACCAGTGATGGACAACTCATCAGGCTTGTTTTAGATGAGAGATTCACGCCAGGCTGTCCAACAGTGCTGTTCAAATCTGATGATGAACGAGCAGTGCTTCCCAGAATGCACCTTGATCCAGTAGATTTCAAACATGTCTACATCGCTCTGAGGAAACAGTTAAGAAGAGTGTCTATCATTCAGTGTTATAAACACATCACTCTGAAAGACTGCAGAGCTGCTCTGGATCCTCTCTGCGGCTGGTGTCTGAACAAACACAGATGTTCCGCTCAAGATGAATGCTCAAATACTTCTTGGGTTTCCATCCCAAAAAACTCTCTTCAGACaaagctgttttcttttcagatgTCAGAGAATTCTTCTAGAAAGATTACTCTGCATCTTTCCTTGAGTCTGGAGAGCGCAGGAGACCCTACTCTCTCGTGCTCCTTCACTAAAGAGAGTGTAAGCCTGTGTGATGGGTCTGATCTATCTGCAAGTTTCCCAAACTGCTCTTGTAGTTTTTCTGACCAGAAACTCTATTCTGGAGGTTTAAAGGTCTCTGCTTCAGTTACTATCGAGGATCAGAAGATCACAGAGACGCTGACGCTGAGAAACTGCTCCAGCATCACAGATCATTCGCCAAATGTTTCTTATACACAGTGTGTTCAGTGTGTCTCATCTGGGTGTCTCTGGTCCTCTTCCTCTCAGCGTTGTGATTGGACACACGGACCTGGAGCACAGTTAAACATACAGGATGCATGTAAACATCTACTCGATGAGATGGTCTATGATGAACCCGAGATTTTCTCCCTGGAGCCCAACAAGGCTTCTTTCCATGGCAGAAACAATGTTTCACTAAAAGGGAGAAATCTGGGATCTGTTACTAAAATCCGTATTCAAGAGGATCTAGAGTGCATTCCTAAAGAATCTCCGGTGTTTGATCGCTCCAGTGATACTTTAAGGTTCCACATTCCTCCCAGTGGAACTAAAGGAACAGTGAAAGTGTGTGTTGTTACTCCTGACGACCGTTGTCATGGTAACAGCATCATCACTTACACTTCTCAGCCCAGCTGCACTGGAATACAGCCCCCGGTCAGCTGGAGCAGTGGTGGAAGGAAGGTTCATGTTCAGGGCAGCAATCTGGAATTAGTGGAGTCAGTTAATAAAGTGttgaaaacacaacacaacacgAGCTCAGGGgacgTGTGGTTTCTTTCACCCCCCTTTGATGCAGGTGGTAGGTATAGTTTGTCGTTAAATGTTGGGAACACCACTGTAGTCTGTGTGGTTGATTTGTCCTATAAGCCTGATCCAGAATTTACCGGATTCACCACCTTACAGGTGGCCGATGATCTGCAGGTGAACATTAAGAAAAGGACTGATAAGCTGAATTTGAGTATGACCGAGGTGACTGTGACGGGTCTACAGGGAGATCAGCAGTATCAGTGTGTTCTGGATAGGATTGAGGCCAATGCTGTTATCTGTAAGATTAAAGGAGAATCAGGAGCCGTCCCAACACTGGACTCACTCACTataaatgttgggaatttttctaaaaatcttGAGTCTCACAatggtttaatatatttatccaTCTTTGCTGCATTGATTGTGCTCATAATTCTGGGTGCTGTTGCCGCATTCGTTGTTCATCGTAAGAGCCAGAAACAAATGAATGAGAGAATGAACAAGCAACTGGAAATGCTGGAAAGCAACATCAGAAGGGACATAAGACAAGgCTTTGTTGACTTGCAAACagaaaaatcagatttaatcGATAGCGTTGGAGCAATACCCTTCCTGGATTACAAGCACTTTGCCTCGAAAATCTTCTTTCCTgagGCTGGTACTCTGGCAGCAGTCATGATCAGAGACATTGGGCAGGACTCTGAGCAGACGACTGTAGATGAGAAATGCCAGGCCTTTGCTGCGCTGATCAGAGATAAGCAGTTCCTAAGTTGTTTCGTGCATGCATTAGAGGAACAGAAAAACTTCAGCATAAAAGACAAATGTACAGTGGCATCTCTGTTGACTCTGGCCCTCCACGGTGACCTGGTGTATCTCACAGAGGTCATGGAGGACCTTCTGCAGAGTCTGATGGACCAGTCCACCAATGCAAATCCCAAACTTCTCTTGCGCCGCACAGAGTCCATAGTGGAGAAGCTGCTCACCAACTGGATGTCCATCTGTCTGTACGGCTTCCTCAGGGAGTCAGTAGGACAGCCTCTGTTCCTGCTAGTGTCAGCTCTGACTCAGCAAATTTCGAAAGGGCCGGTGGACTCGGTCACAGAAAAAGCTCTGTACACTCTTAGCGAGGACTGGCTTCTCTGCCAAGCACAAGACTTTGAGGCTTTGAAACTGAAGGTGGTGTTCGATTTGGGGACTGGAGGAGAGGTCAGTGAACCCTTAGAGGTCAGTGCATTGACTTGTGACACAATCCAGCAGGTCAAGGAGAAAATCTTACAGACCTTCCAGCGCAAATTTGGTTTCCCCTTCCAGCAGATCAGGGATATAGAAATCGAATATGAAAAGGAAGGAAGGTTTGTCATGCTAAAGGAAGTCGATGAGTCCTCAGAAATTCGAGGGCATGTCACCATGTTGaacactttaaaacattatCAGGTTGGAGATGGAGAATGCATTAAAGTTGTCACAACAAAAGTGCATGCGACGTTGAGGTCTCAGAGCAGCGTAAAGGATGATGAGAACTTTGCCGTCAAGTACTTCCATCTGGTGGATCCAGATATTGACACAGACCTGAGCAAACATCCAGAGAAAAAAGCACTAAAATTCAAGGAGATGTACCTCACCAAGCTACTCTCCACTAAGGTAGCAGTCCACTCTTTTGTGGAGAATCTGTTCAGGAGCATCTGGGGACTGCCTAACAACAAGGCCCCACTGGCCATCAAGTACTTTTTCGACTTCCTGGACGCACaatcagagagaaaaaaaatctccgATCCAGATGTCCTCCACATCTGGAAAACAAACAGCCTCCCGCTTCGCTTCTGGGTGAACATCCTGAAGAACCCCAACTTTGTGTTCAGCGACATGGAGAAGACGCCTCACCTGGACGGCTGTCTGTCCGTCATCGCTCAGGCCTTCATGGACTCCTTCTCGCTAGTCGAGCAACACCTGGACAAGCATTCACCAACCAATAAGCTACTCTACGGCAAAGACATCCCTCAGtacaaacaggaagtgaagtcGTACTACAAGTTAGTGAAGGACCAGCCTTCCGTTGGCAGCCATGAGCTGAAAGAGTTTCTTAAAGGGGAGTCAAAGAAGCATCAAAATGAGTTCAATGAATCTGCGGCGCTGCGGGAGCTCTGCAAGTACATGCTCCGCTACTTCAGCGAGATTTCTCAGAAGCTGGAACAGACGGACGCCCCCGATAGGTTGAAAGCGGACTTGCAACACGTGGAGGAGctttttgaaaacatgaaacGAAGTGGTTGGAATTGAAATTTCTGACGTTCATATGCGTGTTCACACTGCATTTCTTTAAAGCTGGTATTTAAACTGCATCTCCATCATGAAGACTCTCAGCATTATCTGCCATATATAAGAGAAGACGGATTCACTTCTGTTTGTTGGACATTGTGGAGACCAAGTGGATGTAATGTATATTGATCAATTTTAGCGTTTGGGAGGAGCTCATTGTTGAGCTTACTGTATATGAGTCAATGTATCTTAAACCCATTAGTTGCAAAACCTGATGATTTAGCTATATggtttaattagatttttcttgCCGCTTTCTGAatcgtatatattttttttactacagaATTTGCCTATAATGCATTAATCTGTCAAGTCAAGCATTTTATACTTCAAGAAATCCTTTGAAAATTagctaaattaattattttcgtAATTTACAGAATTATTcaactgataaaatgtttgtaGTTTTAATGGATAGTATTTTTGAATGTAATCTTAAATAGATCAcccttaatttgtgttccttTGTCGCCCTCTATTGGTTATTCTagttattattcataatttgaCAGCTTGCATTCGATTCTgagaaaatgactttttttcagggcagaaaatattaatgaattgcGTTATCAATAAGGAGTAATATTCAGAGAAATTGATAAAATTGCCGGAATATTGTAAAGTCTAAGAGGaagtaattaaaagtattaaaagag

Function

symbol description
plxnc1 Predicted to enable semaphorin receptor activity. Acts upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNC1 (plexin C1).

NR:

description
PREDICTED: plexin-C1-like

GO: NA

KEGG:

id description
K06572 PLXNC, CD232; plexin C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236915.1 True 5246 mRNA 0.44 32 9301481 9316243

Neighbor

gene id symbol gene type direction distance location
anks1b anks1b,LOC107664870 coding downstream 31638 9103581 ~ 9269843 (-)
avpr2l avpr2l,LOC107725532,LOC107695886,LOC107744926,LOC107590222,LOC107664848,LOC107588672 coding downstream 194496 9103576 ~ 9106985 (-)
dnajb9b LOC107725537,LOC107590229,LOC107596855,LOC107664893,LOC107695887,LOC107744927 coding downstream 200759 9097905 ~ 9100722 (-)
spic spic,LOC107695854,LOC107725559,LOC107590981,LOC107596776,LOC107744943,LOC107664892 coding downstream 209375 9089590 ~ 9092106 (-)
spi2 LOC107590970,LOC107695852,LOC107725518,LOC108233215 coding downstream 213120 9086544 ~ 9088361 (-)
cradd LOC107590265,LOC107695889,LOC107732998,LOC107553893,LOC107664843 coding upstream 28735 9344978 ~ 9355844 (-)
socs2 socs2,LOC107695891,LOC107590271,LOC107732999,LOC107664864 coding upstream 42925 9359168 ~ 9365799 (-)
LOC122342492 LOC107725531,LOC107695865,LOC107591243,LOC107732966,LOC107553876,LOC105909546 coding upstream 57940 9374183 ~ 9375813 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107664862,LOC107695894,LOC107553890,LOC107590313 coding upstream 79496 9395739 ~ 9401453 (-)
cdkn1ba LOC107732982,LOC107725668,LOC107590325,LOC107553888,LOC107664845 coding upstream 139440 9455683 ~ 9458494 (-)
G27425 NA non-coding downstream 277404 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 297258 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 340048 8960446 ~ 8961433 (-)
G27279 NA non-coding downstream 413528 8887186 ~ 8887953 (-)
G27253 NA non-coding downstream 486469 8809767 ~ 8815012 (-)
LOC122343442 NA non-coding upstream 13764 9330007 ~ 9341739 (-)
G27469 NA non-coding upstream 182473 9498716 ~ 9504000 (-)
G27532 NA non-coding upstream 228965 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 231396 9547639 ~ 9552161 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 249204 9565447 ~ 9568297 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 1302 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 292177 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 360078 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 426883 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 783898 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 1039468 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1168679 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 1208288 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 2098477 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 2337227 11653470 ~ 11683862 (-)

Expression


Co-expression Network