sypl1 (sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552)


Basic Information

Item Value
gene id sypl1
gene name sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 934046 ~ 937823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236948.1
ctttaagagtCTTGAGTTTATAACGGAGCGCAAGAATGCCGAGAATCCGTCTCCAGCGTCTCGCTGAATCATATGACTCAAATATTGTTCTCCGGACCCCTGAAAGCGCTTCGTTCGCTTTTTATCCAAACTATCGCCTTGTGAAGATATCCGCTGGACGCGGGCGCCAGATGCACGCGAATCAAACCCGTTACGGAATGCCTGTTATTGTCGGATAGGCTCGGAAAGTCGGTTTTGTGTCCTCATCTGGATTTGCTCCGGTTTCCTCGCGGGGGAGGAGCAGCATCCTTTACCACAGAACCACGTCACTCTGTCAAActtactgggttttttttttttttttttttttttcatgaaaactTGAGCCAGCGCGATTCAAGCCCCTTCGTTTTTCTTCCCGAGGATATCTGGGTCGGCGTGGAGAGATGCAGACGGGCTTTAGATTAAACCTGACCCCCGTCAAAGAGCCTCTGGGCTTTGTGAAAGTCGTGGAGTGGCTCACGGCCGTGCTTGCGTTCGGGACCTGTGGAGGATACGCCGGCACCAACGTGGTTTCCATCTTCTGCGGCGGAAGCAGCAACGAAACCCTCAGAGCCGCCTTCGCCTACCCGTTCAGGTTAAACCAGGAGCTGCTGGCGGAGAACAACACCGCTCTCTGCAACCGAACGGTTCCCGCCACCCATCTGGTGGGAGACTCGTCGTCGTCGGTGGAGTTCTTCGTGGCTGTGGCCGTCTTGGCTTTCCTCTATTCGATGGTGGCTCTGCTGGTCTACCTGGGCTACATGCACGTGTACAGAGACTCAGACTTCGGCCCTATGTTTGACTTCGCGCTGACGGCCGTCTTCTCCTTCCTGTGGCTGGTGTGCTCGTCCGCGTGGGCTCGGGGTCTGCAGACGGTGAAGGACAGCACCGGGACGGCCGGCATCGAATCCACTCTCGTCTGTTCCGACAAAGAGGTCACGTGCGAAGTCACCGATTACGCCAGCATGCGCTCGCTCAATATATCCGTGATATTTGGTTTCTTGAATCTCGTCATATGGGTCGGGAACGCCTGGTTCGTGTTTAAGGAGACGCGCTGGCACTCTCAGAAGGTCAACGCTCAACAGGCGGCGGGACGGGGTCCCAATCCGGCGCCCATCTAAACCACGGCCCCTCAGCACAGCAGTGGAAAACACACAGGAACAGCTCATGCTTTACAAAATAACCAGTCGCGTTCGTTCGTGACATTTCTCTCTTCTCCTTTTTGTTGTCGTATCTTTTGATTTCTTGTGCACTTGaagaaaaatcctttttttggtcatattttatcagcatgctttttttttttgaacatttaatgcaaatgcaattttttttttttgaatgcgcCGTTACGCtctattttacttttatgatcTTTCTTGTCAAATCTAGCATAAAATCTTTTGTCGGCCTCTGTACACGTGTTACGCAGCGTCGGTTGGatttaaaaatagcagtttCTTCTCGCTCAGCAAATTCCTCGTTGCGTTTGTGTCGTTATTGAAGCCGTTTTCATGCAGCGCTAATCTTCGGTTGCGTTTTTAAGAAGGCTTTCTCTCTTTATCTTGTTCGAAGCGCGGTTCTCCTGCCACTGCAATgtcatttttgatgaataaaactcGACTGTGAAGTGCACTTGGCAGTGTTTGTATGCACGCAGGACTTTTGCGCTTCTGGGGAGAAAGCGTGATTTCTTACCCAAATAAATCCTGGCTTCCTTCTGGTATAA

Function

symbol description
sypl1 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Orthologous to human SYPL1 (synaptophysin like 1).

NR:

description
PREDICTED: synaptophysin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236948.1 True 1750 mRNA 0.50 6 934046 937823

Neighbor

gene id symbol gene type direction distance location
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding upstream 2368 917582 ~ 931678 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding upstream 25722 890697 ~ 908324 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding upstream 45287 867196 ~ 888759 (+)
LOC122342832 NA coding upstream 70495 860596 ~ 863551 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding upstream 573124 343592 ~ 360922 (+)
atxn7l1 LOC107658944,LOC107705340,LOC107583941,LOC107656393,LOC107590536,LOC107718553 coding downstream 1337 939160 ~ 957350 (+)
znf800b LOC107658945,LOC107583943,LOC107711512,LOC107590539,LOC107656405,LOC107736565,LOC107705332 coding downstream 20511 958334 ~ 969359 (+)
grm8a grm8a,LOC107584025,LOC107658943,LOC107711511,LOC107656388,LOC107725917 coding downstream 32312 970135 ~ 1111519 (+)
waslb wasl,LOC107725914,LOC107658745,LOC107583945,LOC107656407 coding downstream 319910 1257733 ~ 1272088 (+)
zgc:162331 zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629 coding downstream 408362 1346185 ~ 1351673 (+)
G24811 NA non-coding upstream 935 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 282453 649509 ~ 651593 (+)
G24758 NA non-coding upstream 308821 623251 ~ 625225 (+)
G24754 NA non-coding upstream 314350 619477 ~ 619696 (+)
G24751 NA non-coding upstream 318190 615600 ~ 615856 (+)
LOC122342413 NA non-coding downstream 175072 1112895 ~ 1127380 (+)
G24925 NA non-coding downstream 348789 1286612 ~ 1287073 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 618569 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 751155 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 850808 1788631 ~ 1789276 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 268516 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 494694 434343 ~ 439352 (+)
G24632 LOC107584022 other upstream 559964 373527 ~ 374082 (+)
G24609 NA other upstream 638977 293235 ~ 295069 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 739863 184716 ~ 194183 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 307755 1245578 ~ 1249169 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other downstream 350474 1288297 ~ 1291224 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other downstream 391629 1329452 ~ 1331843 (+)
LOC122343488 NA other downstream 732689 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 846414 1784237 ~ 1788096 (+)

Expression


Co-expression Network