LOC122342832


Basic Information

Item Value
gene id LOC122342832
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 860596 ~ 863551 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236972.1
GCCTATAGATGTCAGACGATCACCAAATCTCAAATCTTTGGTGCGTTTGGATAGAAAAGATGTAAAACGCGCAGCAGTTCAAGATGAGGTTTTTATGGCTACACCGTAAACCTGCTGCTCCTCCTATGAACGCTTTCAGTcatatcaacacacacacacacaaaacctggGACTCTGGGACTGTGTTTTGAGCTTTTTAGAGACAATGAAACTAGATGCTGCGGAGTTGGAGAAGCAGGTGGAGACGTCGACCCGCGAGAAGAGCCCGACGCTTCTGTCCCACTCCATTGAAGAAATCCTGAAGAAACCCGCGGACAAGACACCCGAAGCACCTGGACGCGCGCAGAGCAGGATAAAGACGGACGCTCCCGAGGGCAGACCGTACACAGCTCGTCGGTCCAGTCGCAGACGGGTTCGGACCACGTTCACCCTGAGCCagctggaggagctggagagaGTGTTTCAGCACACGCACTACCCTGACGTTCACACCCGAGACCAGCTCGCCCGGCGGACGCAGCTCTCCGAGGGAAGAGTCCAGATCTGGTTCCAGAACCGTCGGGCGAAGTGGAGGCGCAGTGAAGCTAAAGCAGCTCACAGACCTCTAACAGCGCTGAGAAACGCCAGACACACTCACCTCCTGACTCCGGTCCTCTGTGTGCCGTACCCGGGTTTCCCGCCGAAGCTCTGGCTGTCGGAGTCGGCCCGTCCTCCCATCGGTTCCCCCGGGCTCCCCACACTTCAACATCCTTCATACTTCTGATGCTTTCCCCGCAAGAGACATTTTCATCTTCGGTCTAAGGATCTACTCCAAGACTAAAAGGACACATCATGTTGTACATAAAGCGCGTTTTGTATTGAAGGACTGCcgccttttttttatttccaaacaGAAATCATACGTGAAGTGATGAACGTGTGGCAAGCCGTAAATCAATTTCCTTATCTCGTCACAATAAAACCCTGATAAAACCAGTGAGTGAACGAAATCAGCCCGAACCGCCGGATTCCCAGAATCGTAGAAGAAGAGCCTTTGAAGATGGCCGTGTTTTCGGGCTTGTGCGAACAAATACGACGCCTACAATTCAACTTCACATCCAGTGGAATAAAAGTGTAGACTAcatctgtgtgcatgtgtttaatTAAACCCAAAG

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236972.1 True 1154 mRNA 0.51 4 860596 863551

Neighbor

gene id symbol gene type direction distance location
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding upstream 499674 343592 ~ 360922 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding upstream 647437 205505 ~ 213159 (+)
glipr1a NA coding upstream 661060 195092 ~ 199536 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 753291 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 771444 87004 ~ 89152 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 3645 867196 ~ 888759 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding downstream 27146 890697 ~ 908324 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding downstream 54031 917582 ~ 931678 (+)
sypl1 sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552 coding downstream 70495 934046 ~ 937823 (+)
atxn7l1 LOC107658944,LOC107705340,LOC107583941,LOC107656393,LOC107590536,LOC107718553 coding downstream 75609 939160 ~ 957350 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 209003 649509 ~ 651593 (+)
G24758 NA non-coding upstream 235371 623251 ~ 625225 (+)
G24754 NA non-coding upstream 240900 619477 ~ 619696 (+)
G24751 NA non-coding upstream 244740 615600 ~ 615856 (+)
G24746 NA non-coding upstream 253082 607287 ~ 607514 (+)
G24811 NA non-coding downstream 1289 864840 ~ 933111 (+)
LOC122342413 NA non-coding downstream 249344 1112895 ~ 1127380 (+)
G24925 NA non-coding downstream 423061 1286612 ~ 1287073 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 692841 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 825427 1688978 ~ 1693389 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 195066 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 421244 434343 ~ 439352 (+)
G24632 LOC107584022 other upstream 486514 373527 ~ 374082 (+)
G24609 NA other upstream 565527 293235 ~ 295069 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 666413 184716 ~ 194183 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 382027 1245578 ~ 1249169 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other downstream 424746 1288297 ~ 1291224 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other downstream 465901 1329452 ~ 1331843 (+)
LOC122343488 NA other downstream 806961 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 920686 1784237 ~ 1788096 (+)

Expression


Co-expression Network