LOC122342846 (ppfia4,LOC107675841)


Basic Information

Item Value
gene id LOC122342846
gene name ppfia4,LOC107675841
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9715610 ~ 9722466 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236982.1
ATGCAGGAGGCTGAGCTGCCAGATGAGTTGGGAAGAAAAATTCTTCTTCAGTATACAGATGGACTCAGTAGCGCTAAACGCAGGCTCTCAATCTTACACTGTTTGTGTTCACTGAAGAGGAACGAGAGGCTTCCCAATGGCTCCATCGATGCCCATGACGACACCAGCAGGTGTCTGGAGCTGCAGGAACTCCTGGATAAGGCCAATAAGGAGCTGACCCAGAACAGAGATAGGATCAGCGGCCTGACCAATCGAATGTCTGAGCTTGAGACGGAACTGGCTACCGCCCGCAAAGACCTACTGAAGAGCGAGGAGCTGAGCGCCAAGCACCAGAGGGACATACGCGAGGCGATGGCACAGAAGGAGGACATGGAGGAGAGAATCACAACATTAGAAAAGCGTTACCTTGCTGCCCAGAGAGAAACCACCTCAATCCATGACCTGAACGACAAGCTAGAGAACGAGCTGGCCACCAAGGACTCACTTTACCGACAGAGCGAGGAGAAGGTGAGACACCTCCAAGAATTGCTGGAGTTGGCAGAACAACGGCTACAGCAGACCATGAGGAAAGCAGAGACTCTGCCCGAGGTGGAGGCTGAACTGGCCCAGAGAGTNAAAAAAAAACGAGAGAGCCAGTTCATACGATTATTTTCTGTCAGGAAAATGCCCTCTGAGATGGTGATGAAACAAAACGATAACTTAAAGAAGGGCGGAAACTGA

Function

symbol description
ppfia4 Predicted to be involved in synapse organization. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA4 (PTPRF interacting protein alpha 4).

NR:

description
PREDICTED: liprin-alpha-2-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236982.1 True 720 mRNA 0.51 5 9715610 9722466

Neighbor

gene id symbol gene type direction distance location
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding upstream 61230 9641248 ~ 9654380 (+)
bik NA coding upstream 131098 9581569 ~ 9584512 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding upstream 138649 9556829 ~ 9576961 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding upstream 161050 9545685 ~ 9554560 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding upstream 341792 9355967 ~ 9373818 (+)
LOC122342860 ppfia2,LOC107694182,LOC107755902,LOC107680027,LOC107749078 coding downstream 641 9723107 ~ 9743552 (+)
lrrc4.1 lrrc4.1,LOC107557314,LOC107732976,LOC107699068,LOC108432552,LOC105904105 coding downstream 361134 10083600 ~ 10088337 (+)
pax4 LOC107695909,LOC107576795 coding downstream 438681 10161147 ~ 10164486 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding downstream 646873 10369339 ~ 10374317 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding downstream 660153 10382619 ~ 10397829 (+)
LOC122342587 NA non-coding upstream 41933 9660487 ~ 9673677 (+)
LOC122342620 NA non-coding upstream 158892 9554960 ~ 9556718 (+)
G27498 NA non-coding upstream 178523 9536610 ~ 9537087 (+)
G27407 NA non-coding upstream 219957 9495434 ~ 9495653 (+)
G27406 NA non-coding upstream 225918 9489070 ~ 9489692 (+)
G27643 NA non-coding downstream 540403 10262869 ~ 10264200 (+)
G27651 NA non-coding downstream 565012 10287478 ~ 10365571 (+)
G27731 NA non-coding downstream 926226 10648692 ~ 10659331 (+)
G27729 NA non-coding downstream 931238 10653704 ~ 10658141 (+)
G27754 NA non-coding downstream 1453958 11176424 ~ 11178043 (+)
G27490 NA other upstream 125292 9587319 ~ 9590318 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other upstream 137036 9577315 ~ 9578574 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 193577 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 319853 9381542 ~ 9395757 (+)
G27360 anks1b other upstream 488398 9163147 ~ 9227212 (+)
G27629 NA other downstream 435693 10158159 ~ 10257553 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other downstream 643246 10365712 ~ 10367925 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 756975 10479441 ~ 10507554 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other downstream 939765 10662231 ~ 10675110 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other downstream 963631 10686097 ~ 10702203 (+)

Expression


Co-expression Network