pah (pah,LOC107695873,LOC107744915)


Basic Information

Item Value
gene id pah
gene name pah,LOC107695873,LOC107744915
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8874712 ~ 8885016 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236987.1
ACCGGACAACACGAACCAGATGTGATACCCCAGGGGTTTGTGGGCAAGCGTGACACGCGCACGGGACGGCTCTGGGGGTGTGGTGTCACGTGGTACTTTTAAATGGCCCGAGTTTCGGATGGGGGGGCACAAAGTGCACAGAAGCATCCAGCGAGTCGACATCACCTGAGGAGCGAAGCAAGAATGGACGCGGGTTTCAGACCGATGAACGGGGATCTGGAGAGGAAGGGCTCTCTGACCTCATCCTACCTGGAAGAACCGTTAAACAAAACAGGAGTGGTGTCCTGCATCTTCTCTCTGAAGCAGGAAGTGGGAGCCCTCGTGAAAGCTCTAAGACTATTTGAGGACAAAGGCATTAACCTGACCCACATCGAGTCCCGTCCATCCCGTGGCAACAAAGAGGAGTATGAGTTCTTCATCAGTGTGGATCAGGCCTCCTCTAAAGCTCTAGATGAAGTTGTTGACGGTCTGCGCACACAGATCAGCGGCCAAGTTCACGAGCTGTCCCGCAACAAACAGAAAGACACGGTTCCATGGTTCCCAAATGACATCCAGGACTTGGATCGCTTTGCCAATCAGATTCTCAGTTACGGGTCCGAGCTGGATGCAGACCATCCTGGCTTTACGGACCCCGTGTACCGTGCCAGAAGGAAGGAATTTGCTGACATTGCCTACAACTACAGACACGGACAGATTATTCCACGTGTTGAATACACGCCTGAAGAGAAGGCCACATGGGGAACGGTTTTTCGAGAGCTGAAGACCCTGTACGCGACTCATGCCTGTCGCGAACACAACCGTGTTTTTCCACTGCTGGAGAAGTACTGTGGGTACCGCGAGGACAACATCCCGCAGCTAGAGGACATCTCCCACTACCTGCAGTCCTGCACAGGTTTCCGTCTGCGTCCTGTGGGTCTCCTCTCCTCGCGTGACTTCTTGGCCGGTCTGGCCTTCCGAGTGTTTCACTCGACGCAGTACATTCGTCACAGCTCCAAACCCATGTACACGCCTGAACCGGACATATGTCATGAGCTACTGGGGCACGTCCCACTGTTTGCTGACCCAAGCTTTGCCCAGTTCTCACAGGAAATTGGACTCGCTTCTTTGGGCGCCCCTGATGAGTTCATAGAGAAGCTGGCCACAGTCTACTGGTTCACTGTGGAATTTGGTCTGTGTAAGGAAGGAGATAAAGTGAAGGCTTACGGTGCTGGTCTGCTCTCTTCTTTTGGCGAACTGCAGTACTGTCTGACGGACAAGCCCAAACTTCTGCCCTTCGAGCCGGAGAAGACCTGCCTGCAGCAGTATCCCATTACAGAGTTCCAGCCGGTTTACTTTGTGGCTGAAAGTTTTGAGGACGCCAAAGACAAAGTCGGGAAATTTGCTTCCACCATCCCCAGACCTTTCTCTGTGCGCTACAATGCCTACACACAGAGAATTGAAATGCTGGACAACACACAGCAGCTGAAGAACCTGGCCGACAACATCAGCGgCGAGATCTCAATCCTGTGCACTGCCCTGCGAAAGATGAAGTGAATCGACGCTGGGAGACGTTCAAGGAAACCGAAGAGGAAATGCTAGAAAATCTAGAGACGCCAAATAAGCGTCGTCTTTTCGGCTCGTACTTTTTCTAATCAAAACGGCGATAGAGAGAGCATGATACTGCGTATTAAATTAGTTATTATGTATTGCATGTACACCGTATTTATGCACAAATTTAACTATAGTTCGGAAATATTTAGCCGCCACGTATTTAAATGACACGTAACGAAATAACGCGGGAAAAAAGAATACCTATGCAAAACAAATCGCGTGTAAATACAGAAACGCTTGGGGCGTTATGAGGCCCGCTGTcgcagattttttattttatatattgtattgtatttttctgAGCGGTTTAATCGTACCAAAACACAGATCGCCTACCGTCCTCCGTTAGCTTCAGCTGTCGCGTCTCGTCGTGGCGCGGAGTTGCTGTAATTTTCCCAAACAAGCCGCAATCAACGCATCACGGGATCAAAGGCTGAGCCAACGCTTTTGGGGGACGAATTATTTTCATCGTGAAACCGCTTTTGTTCAAAACGTGCCTTTATGTTCTCCGTTACGCCAAAGCTTAATGATTAAAACGTAACGAAATATATTTGCAGAAGTTTTTGCTAGACGGcgaatgcattttaacatgctACATATATCATGTAACTGTTGCTGTGCTAAAGACTGAGATGTTATGCATGCATTGTCACGTGtacttaaaaaaatcaataaagatGGTTATTATTAA

Function

symbol description
pah Predicted to enable phenylalanine 4-monooxygenase activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in several structures, including digestive system; epidermis; eye; optic vesicle; and periderm. Human ortholog(s) of this gene implicated in intellectual disability and phenylketonuria. Orthologous to human PAH (phenylalanine hydroxylase).

NR:

description
phenylalanine-4-hydroxylase-like isoform X1

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0004505 phenylalanine 4-monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016597 amino acid binding molecular_function

KEGG:

id description
K00500 phhA, PAH; phenylalanine-4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236987.1 True 2281 mRNA 0.49 14 8874712 8885016

Neighbor

gene id symbol gene type direction distance location
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding downstream 17662 8843207 ~ 8857050 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 70872 8780290 ~ 8803840 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding downstream 121878 8579051 ~ 8752834 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding downstream 342258 8528373 ~ 8532454 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding downstream 346442 8518034 ~ 8528270 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding upstream 92862 8977878 ~ 9000458 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding upstream 133314 9018330 ~ 9023432 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding upstream 156997 9042013 ~ 9048831 (-)
mybpc1 mybpc1,LOC107695883 coding upstream 164505 9049521 ~ 9082049 (-)
spi2 LOC107590970,LOC107695852,LOC107725518,LOC108233215 coding upstream 201528 9086544 ~ 9088361 (-)
G27253 NA non-coding downstream 59700 8809767 ~ 8815012 (-)
G27257 NA non-coding downstream 65528 8805244 ~ 8809184 (-)
G27263 NA non-coding downstream 69482 8804155 ~ 8805230 (-)
LOC122343385 NA non-coding downstream 100541 8762099 ~ 8774171 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding downstream 338036 8533831 ~ 8536676 (-)
G27279 NA non-coding upstream 2170 8887186 ~ 8887953 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding upstream 75430 8960446 ~ 8961433 (-)
G27417 NA non-coding upstream 118907 9003923 ~ 9004223 (-)
G27425 NA non-coding upstream 138861 9023877 ~ 9024077 (-)
LOC122343442 NA non-coding upstream 444991 9330007 ~ 9341739 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 114 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 357129 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 406684 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 624785 8247911 ~ 8249927 (-)
G26951 NA other downstream 1316259 7555115 ~ 7558453 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 7003 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 119244 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 386956 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1470695 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1599906 10484922 ~ 10522249 (-)

Expression


Co-expression Network