LOC122342854 (trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852)


Basic Information

Item Value
gene id LOC122342854
gene name trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12073703 ~ 12147286 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236993.1
ATGGGCATCGAGGACGCGAGCATGAGGAACGGACGGGCTCTGTCCGATCAGTGGGCCGACAGCGTGGTGGTCCGGCCCCGGACGACCGAGCAGCACATCACGGTGAACAAGAGGCTCGTGCTGGGCTTCGCCATCTCCATCCTCACCCTCATCGTCGTCACGGCCATCGCCATAACGCTGAGCCAACAGCAAGTGGAAACAGTCCGGGACGCTAACATCAGTCACAGAGACTCGGAGGACGGCCAGCAGCCCTGGAGACACCTGCGCTTACCGGCCACCCTGCGCCCGCGCCACTACGACCTCCGCCTGACCGCGTCCATGGAGAACTTCACCTTCTCCGGGGAGGTGCGCGTCGAGTTTGAGTGCGTTCAGTCCACGAAGCTGATCGTGCTGCACGCGGACCGGCTGGAGGTGGACAAGGTGCTGGTGTACTCGGACAGCAAGAAAGCGGGCGCCATGAGGATCCAGCGCCGCTTCCACTACCAGCCCAAGCAGGTGTATGTGATCGCGCTGCACAGAGAGATGAAGCCCCTCAGAACATACAAGATCAACATCACTTTCCACGCGCACATCGAGCACGAGCTCCTGGGCTTCTTCCGCAGCTCCTATGTGCTGAACGGAGAAAGAAGGTTTCTGGCGGTGACGCAGTTCTCCCCGACTCACGCTAAAAGCTTTCCGTGTTTCGACGAGCCCATCTACAAAGCCACGTTCAGAGTGAGTCTGAAACACGAGAGCTCGTATCAGTCGCTCTCTAACATGCGGTGGAGGCCTCGACGACGCCCGCATGTCCACGTACTACCTGGCCTGGGCGTGTGCAACTTCACCTACAGAGAAGCAGTTACAGACAGTGGAGTTGTGATTCGGCTGTACGCCAGGCCTGACGCCATCCAGAGCGGATCGGGGGACTACGCTCTGCACATCACCAAGAGACTCCTTCAGTTTTACCAGGATTACTTCAAAGTCAAATATTCCCTCCCTAAATTAGATCTGCTGGCGGTGCCGAAGCATCCGTACGCAGCCATGGAGAACTGGGGCctgagtgtgtttgtggagCAGAAGATCTTGTTGGATCGTGACGTCTCCTCCTTCTCCTATCAGATGGAGCTCACCATGGTGGTGGTGCACGAGATCTGTCATCAGaagaaagaaagtgataCAGGCTTGACAATCGGCACATATCCAGCTAATGAGAAGCACCAGAGGTGTATTTCCAGAGGGGCGTCTCGAGTCGGCAGCCGCCCGCTGAAGGACGCCGCAGACATCGGGCCTGTGGGGATTCCACAGAAATGTGACGCCCTTCGCTGGATTTCAGGTCTCTGTGAGGAGACGTCAGACACGCGTTTTCTGATGCTTTTCCTTCCATGCTGGTGCATGACCCGCGTTACAAGAGCAGATAACACAGCATGA

Function

symbol description
trhde Predicted to enable metalloaminopeptidase activity; peptide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including peptide catabolic process; proteolysis; and regulation of blood pressure. Located in extracellular exosome.

NR:

description
PREDICTED: thyrotropin-releasing hormone-degrading ectoenzyme

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236993.1 True 1407 mRNA 0.57 10 12073703 12147286

Neighbor

gene id symbol gene type direction distance location
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding upstream 46235 12020621 ~ 12027468 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding upstream 54738 12014586 ~ 12018965 (+)
sema3c sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880 coding upstream 289896 11740732 ~ 11783807 (+)
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding upstream 420945 11618061 ~ 11652758 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 467132 11602201 ~ 11606571 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 22841 12170127 ~ 12267756 (+)
itih5 itih5,LOC107675976,LOC107555826 coding downstream 1018454 13165740 ~ 13175798 (+)
sfmbt2 sfmbt2,LOC107675978 coding downstream 1043318 13190604 ~ 13227324 (+)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 coding downstream 1090928 13238214 ~ 13254897 (+)
il15ra NA coding downstream 1145702 13292988 ~ 13301954 (+)
G28095 NA non-coding upstream 53937 12019496 ~ 12019766 (+)
G28094 NA non-coding upstream 54281 12019103 ~ 12019422 (+)
LOC122342766 NA non-coding upstream 81819 11989871 ~ 11991884 (+)
G28077 NA non-coding upstream 87517 11985352 ~ 11986186 (+)
G27862 NA non-coding upstream 287851 11752668 ~ 11785852 (+)
G28104 NA non-coding downstream 852 12148138 ~ 12155255 (+)
LOC122343506 NA non-coding downstream 190659 12337945 ~ 12340101 (+)
LOC122342723 NA non-coding downstream 313400 12460686 ~ 12462227 (+)
G28209 gata3 non-coding downstream 883751 13031037 ~ 13144904 (+)
G28221 NA non-coding downstream 955036 13102322 ~ 13102900 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 258398 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 382574 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 657476 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 739247 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 1364756 10707132 ~ 10708947 (+)
kin kin,LOC102791470 other downstream 1003450 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1158383 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1176002 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 1258643 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 1735608 13882894 ~ 13961098 (+)

Expression


Co-expression Network