LOC122342857 (LOC107689242,LOC107584712)


Basic Information

Item Value
gene id LOC122342857
gene name LOC107689242,LOC107584712
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13736605 ~ 13748988 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236996.1
ttaactctttTAAAAACTCTGTTAAATACATCACATATGAGGTACTagtttttaccgtttttttgcCATCCAAGCCCGTCCTATTGCTAGAAGACAAAGATGACCACAACAGCTGTATTATTGCTTTACTTTGTTAATTAAGACTTAGTTGAGGTGTTTACCAATTCACTACTTCATTAAGCAGAAATAGATATGCCTGTCTTGGAATTTCCAAGACACCGACATGGCTGccgtatatatttttgaaataaatattgatattttaatagCCGTGGATATAGTGACTCCTGTGGCAAATTGGAACTGGAACTGCATTGTTCTGACCTAATGTGGAGTTGAATTGGGGTGATTTTACAGTTACAGACACAGAAAGTTCTCACTGTTCACGCAAACACATTATTTCCAGCGATTCACTTTTCACTGATGCATTCTGTCACTGTTTGTCCGGAGCATTGCATTTGTCTGCTCTGTCCTCTGTACCTCTGAGAAAACTGAGCACCCTCGTTGAAGAGAAGTGACCTGTTGACATGATCACTAGATGGACCTGGATGGACATTTGGTTACTGATTAACACCGAATCACATAGCCTTACACGTGAGCGAAGCAGCAGAGTTCTCCATCCATTCTGAGGGACACAGGCAACAGCACAGGACATCATGAGCGTGGAGAAGAAGACGACAGGAGAGCCATGCTGCTCCAAATTGAAGatgtttttggctgccttgtgttttgtttactttgccAAAGCTTTTCAGGGCAGCTACATGAAGAGCTCTATCACACAGATTGAGAGGCGTTTTGACATTCCCAGCTCGCTGATTGGATTCATTGATGGAAGTTTTGAAATCggtaaTCTGTTAGTAATAGCATTTGTAAGTTACTTTGGTGCTAGTCTCCATAGACCACGACTCATAGGAGCTGGATGTTTAATCATGGCCATGGGATCTTTTATAACTGCCTTACCACGTTACTTCCAAGGACCgTACCAATATGAGACCACTATTTCATATGTCTCTGCCTCTAATGGTACAGAGAGTATTCTACCATGTTTAACCAATGGGAGTCCTGCAAAAGATGAAATTCCCACAGTGGAAATTCAAGAAGAATGTGAGAAAAACGCCAGTTCCTCCTTGTGGCTCTATGTGTTTCTGGGGAACATGCTTCGCGGGGTAGGAGAGACACCCGTCGTACCTCTTGGGTTGTCTTATCTGGATGATTTTTCGAGGACGGAAAACAGTGCTCTTTACATGGctgtcGTGCAGACTGTGGGAATAATAGGGCCAGTGTTTGGATTCATGTTAGGATCTTTTTGTGCCAAACTCTACGTGGACATAGGAGCAGTGGACCTGGataccATCACCATCGACCACAAAGACTCACGCTGGGTTGGTGCCTGGTGGTTGGGCTTTTTGGTAACTGGAGGACTGATGTTATTGGCTGGAATTCCCTTTTGGTTCTTTCCCAAGTCTCTTCCTAAGAAGGGTGAGACTGAAACTGAGAAAAAATCTAATCTTGTAGAGGGTGAGCAGGGCCGTTTCATTCccgaaaacaacaaacacaataaCGCTCCAGACAAACCAGCTTCGGTTTCAATGGCAACTCTGGCTAAAGATTTTCTGCCATCACTGAGGAAACTCTTTTGCAACACAATTTACATGGTCCTCATTATCGGCACTATCCTACAAGTCAATGGTTTTGTAGGAATGATGACATTTCAGCCAAAGTACATTGAGCAAACTTATGGCCAGTCAGCATCAAGGGCTATATTTTTACTAGGCATTTTTAATTTACCAGCTGTGGCTTTGGGAATTGTCACTGGGGGGTTTGTAATGAAGAAGTTCAAACTTAATATTCTTTGGACAGTCAAGATCTGCTTTGTAGCATCTTCTTTGAATTTCTCTATGTTGCTTTCTCAGTATTTTCTTCAATGTGACAATTCACAAGTTGCTGGACTCACAATTTCATATCAAGGGGCTCCAGAGGTGTCCTACCAGCAGAATACGCTAATTTCTCCATGTAACATGGGTTGCACTTGCTCCCTTAAGCACTGGGATCCTATATGTGGGAACAATGGACTGACCTATGCCTCCCCTTGCCTTGCTGGCTGCCGAACCTCCACCGGAGTTGGCAAGGAGATAGTATTCCACAACTGCACCTGTGTTGGAGATTCGCCTCTACCGTATGCAAACATGTCAGCAGTGCTGGGCCAGTGTCCTCGAAAGAGTGATTGTGACTCCATGTTTAAGCTCTACATGGCGGTGACAGTCCTTGGTTCCTTTTTCGTGGCTTGTACAGTCACACCAGGTTACATTATTTTGCTCAGATCCATAAATCCCGAATTAAAGTCTTTGGCTCTTGGTTTGCATATCCTGCTTATTCGGACACTGGGTGGCATTCCTGCTGCAATTTACTTTGGAGCCTTGATTGACATGACCTGTCTGAAATGGGGAACTAAACAATGTGGAGGGAGAGGAGCGTGTCGTATTTATGATTCCATTGCCTTCAGAAATTATTTCTTGGGCGTTATTTACGCCTTGTTTGCTTCATCCTACGTGCTGTGTGGAGTCCTGTACAATAGATTGGCTCATCGCGAAAGGAAGCAAGCGCTGCAGTCCCAATTAAAAGctcacatcagctCAAATGGGAGAACGGCTATCCTGGCCATGATTGCGGAACAGGATCCTTGGGAGTCAGGAACGGGGATGGTTCTCCTGGCCGTCAATGAGGAACGGGAACGGCTAAGGTGGCCAGGACTGCAGAGCGGGAGACGGCTGGTGGGTTTTCAGATCAGGGAGGCTGTTACTCCATATCACACCTCTCCAGGAATCACTGTCATTGCCCACGTGGGTATTGAAGTCTCCCAGAAGTACAACCGAGTACCCAGACCTTCCAGCACCCCTCACAATGACCCCAAGCACATAAGCACAAGCTACAACTTTGACGTCATGTATCTGGGAAGGAAGGGGTGA

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236996.1 True 2969 mRNA 0.45 18 13736605 13748988

Neighbor

gene id symbol gene type direction distance location
slco1d1 LOC107689241,LOC107597003,LOC107584712,LOC107689720,LOC107689242,LOC107726840 coding downstream 7171 13718604 ~ 13729434 (-)
slco1e1 slco1e1,LOC107584713,LOC107716166,LOC107689719,LOC107597035 coding downstream 19382 13708792 ~ 13717223 (-)
LOC122343398 LOC107726825,LOC107584742,LOC107689735 coding downstream 28526 13702383 ~ 13708079 (-)
LOC122343316 NA coding downstream 48965 13683225 ~ 13687640 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding downstream 57517 13674271 ~ 13679088 (-)
LOC122342931 LOC107689242,LOC107689241,LOC107584712,LOC107689720,LOC107597003 coding upstream 1846 13750834 ~ 13760856 (-)
LOC122343235 LOC107689737,LOC107716193,LOC107689255,LOC107584741,LOC107716201 coding upstream 14402 13763390 ~ 13784708 (-)
LOC122342633 NA coding upstream 221276 13970264 ~ 13975630 (-)
alg10 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 coding upstream 226817 13975805 ~ 13980615 (-)
srr si:ch73-263o4.4,LOC107569226,LOC108427077,LOC107666211 coding upstream 233368 13982356 ~ 13985446 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding downstream 123834 13610216 ~ 13612771 (-)
LOC122342564 NA non-coding downstream 392348 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 416857 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 484571 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 491217 13242506 ~ 13245388 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 71708 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 117789 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 120434 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 131043 13880031 ~ 13880847 (-)
G28569 NA non-coding upstream 132317 13881305 ~ 13882012 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other downstream 37890 13692471 ~ 13698715 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 303902 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 374667 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 549715 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 1247424 12465612 ~ 12489181 (-)
LOC122343280 NA other upstream 66586 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 226369 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 406504 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 938885 14687873 ~ 14704622 (-)
LOC122342642 pfkfb3 other upstream 1059555 14808543 ~ 14810711 (-)

Expression


Co-expression Network