sema3c (sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880)


Basic Information

Item Value
gene id sema3c
gene name sema3c,LOC107694195,LOC107680038,LOC107710663,LOC107755880
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11740732 ~ 11783807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236998.1
ctctctcgtttacCTCTCTCAATCTTCTCAAGCTCTCTCTTCCCTGTCCCGCAGTCAGCCGGTTGGAATAACACCTCTTTCAGTCTCACTGGGAAAGTCCACGCAGCCCTGTATTTCTACAGCACTCACCCACTCTCCGCTCAGCGAGGACAGCGCGGCTGGGAAGCCTCAGAAGGTGGGCCGGTCTGAGTGTCTCCTCAGCAGTCATGGGGAGGTCAGGAGCGCTCTGGGTTTGGTGGCTTGGGACGAGCATGCAGTTGTTTCTTTCCCTCGTCCTCTGTGTCACCTGCACCCATGGTCTTTTTCCACCACAGCCACGGGTCTTCCTGTCGTTTCAAGAATTACAGAAAACCCAGTCCTTTGAGCACTACACTTTGTCTGAGAAAGCCATGGACTATAGGATCCTCTTCATGGACGAAGATCAAGACCGTATGTACGTGGGCTGCAAAGACCATGTTCTCTCAATGGACATCAACAACATCAGCGAGACCCTGCTGAAGATCTTTTGGCCGGCGTCTACTAGTAAAGTCGAGGAGTGTCAGATGGCTGGCAAAGACCCCACACATGGATGTGGAAACTTCTTAAGAGTGATTCAGCCTTATAACAGGACTCATCTGTTCATCTGCGGCAGCGGAGCCTACAGCCCAGTTTGTGCATATGTTAACCGTGGCAGGCGTCCTGAGGAGCAAGTCTTCCAAATCTCTTCCCGAGCAGAATCAGGGAAAGGAAGATGCTCGTTTAACCCACAAGTCAACACCGTCTCGGTCATGCTCAATCAGGAGCTGTTCTCTGGCATGTACATTGACTTCATGGGGACAGACGCAGCGATCTTCAGGAGCCTGACCACAAGGAACGCGGTTAGAACGGACCAACATAACTCCAAATGGCTGAGCGAGCCGGTGTTCATCGATGCCCATTTGATTCCTGATGGCTCGGACCCGAACGACGCTAAGCTTTACTTCTTCCTGCGTGAGAGACTGACAGACAGTAGTGGAAACACTAAGAACATCCATGCTATGGTGGCTCGAGTCTGccctAATGACATTGGTGGTCAACGCAGTCTGGTGAACAAGTGGACCACATTTCTGAAGGCTCGGCTGGTGTGTTCGGTTCTAGAGGAAGATGGTACAGAGACCCACTTTGATGAGCTCGagaatgtgtttttattggaGACGGACCACCCAAAGGGTCTTCTCGTCTTTGGAGTTTTCACCTCCACGAGTTCTGTGTTCAGAGGTTCTGCCGTCTGCGTGTATAACATGGCCGACATCCTGACGGTTTTCAACGGACCGTTTGCGCACAGGGAAGGACCCAACTTCCAGTGGGTGGCTTTCCAGGGCCGGATCCCCTACCCGCGACCGGGAACTTGTCCTGGTGGAGCGTTCACCCCTCATATCCAGAGCACTAAAGAGCTTCCAGATGATGTGGTGACGTTCGCGAGGAATCACCCCGTCATGTTTAACCCCATCTACCCGGTCGGCAGGAAACCTCTGGTGGTGCGGACACATGCCGATTATAAATACACCTCTGTAGCTGTGGACCAGGTCACCGCTGCGGACGGACACTACCAGGTTCTCTTCCTGGGCACAGATAAAGGCACGGTACAGAAGGTCGTGGTTCTGCCGTCAAACGGCTCCCTGGATGAGGATCTAATCCTGGAGGAGCTGGAAGTGTTTAAGAAGCAGTCTCCCATCACCAACCTAAGAATCTCATCTAAAAAGCAACAGCTGTATGTTAGCTCGGAGCATGGAGTTTCCCAGGTGTCTTTGCACCGCTGCATGGCGTACGGCTCTGCCTGCGCAGACTGCTGTTTAGCGCGGGACCCGTACTGCGCCTGGGACGGGCTCAGCTGTTCTCGATTCTACCCTACTGGCAAGagGAGAAGCAGAAGGCAGGATATTATGCATGGGAATCCACTGACTCAGTGCAGAGGGTTCAATCTGAAAGCTTACAGGAATGCAGTGGAGATGACTCAGTATGGAGTCAAAAACAACACCACCTTCCTGGAGTGCCAGCCCAAATCTCCACAGGCCTCAGTTAAATGGCTCATTCAGAGAGACAACGATCGCAGGAAAGAGGTGAAGCTGAGCGAGCGTGTGGTGTCCACCAATCACGGTTTGCTCATCCGTTCGGTGCACTCTTCGGATCAGGGGGTGTACTACTGCCTGGCCACGGAGAACGGCTTCAAGCGCACCCTTGCTAAAATTCGTCTCCAGATTCTGAGTGAAGCTCTGGTCAGCGCTCTGAGCAATAAACATTCTCCTTGGGGCTGGGCAGCCTCCCTGCACCCCAAAGCCCTGGTGTCGGCCTTCAGCCCGGCTGAGACGCTGGCCATGCACCAATACTGCAAGGAACGCAAACAGATGCAGAGTCTGCAGAACATACAGAGCCCCAAGAGAGGCGATCTGGGCAAACTCAAACCCTTGCTGGACCACAGGAAGAGCAGGAACCGCCGGAACCACTTGCAAGTGGAATAGGGCCGACAGACGGATGGAGAGGTACGAATAAAGACATGCATCAGGACAGAAGTGGAATATAAAGGAGGAGAGGCGCTGGAGAGGATTCTTCCGTTTTGAATCGCAATCGTGCTTGTTCTTCGAGCTCAAAGCATCTCGGCGCGCTTCCTGTACAGCAGTCTTACGCACACGAACGCCAAGAGCAGAAGACTCCGAGACATCCTCGCACACAGGCACCAATTTGTGTTTAAAGCAGCATAATACAAAATGCCATACGTCATACTGTTATCATTTTAGCGTGGCAGAACAAACCACGAAGTAATACATTGAAATGGCTCGATGGggacagtttttttgtttctgtgttgatGTACGTCCTATTGAAACATTGGAAAGCTTGGCATTTTGGGGTGGGACAGAGCTCGTCCATTTTTAACAGCCTTTAGTTTACATTACAGCCACGAACATTTATTTCTGCTCGCTAACGCTagtgaagtgttaccaaatggGACAATATCAATATCTAGAGCGCATTTCAACAGACAAGTTTAGCCATCGGTATTTTGGGTTGCTTGCTGCGAATTGCAAATGTACATATAAAGGTTTTCGAATTTTAGGACTACTGTACATACGCATTAGCCTTAGCCTCAAAGCTAACAGACGCAGACAGAAACCCACagaaactgttttgttttatagtaCACATCGGATGAAATGTATATGGATATGGATCTTGAGAGTGTTCTGTTAACTTATagatgtaaagctgaattagCTTCTAAACTATTGATTTCTTctacattgtttttaatatccCTGCAGAACATTGCGATCAGAAGTATATTCTAGAGATCTGAGTTTGATATGACGTGACACGTTTAGGGAAAGAAACTGCTATAAAACGGAAACAATTTGTCCATTTTACTACCTACAACTCTTCATTACCCCTGACTGAATCACAGTGCTATTTTAAGTATCGGTAGCAGCCttaaaaaagtcaaatcaaTGTACACCGAGCTGATCATTTGCGAATTAGAGCTCATCTCCAGCTTGTAAAAAGCTAGTTTTCTAGCAAATGAGAATACTTCTTGGAGATAAAAACATGACGCGCCGACCAAAGTACATCATCCCAGCTGCGCCACAGATGTTTATATGGGAAGTGAGAGGGAGAGAAGATGGTTTGGAGACGTTTCAAACTGTACCAGACAAGTGGCTCTCTCAGCCTGTGATACTGTAAAGAGTGTTGTGTTTTTGCCAAGTTCTGCGCTTCGGGAATCGTCCTCAATCCAAAAATGACCGGTtcgtcatcgtttactcacccccaCGACCTTCCGAGAGCGCCAAGACCTTGAACGTAGCGCGCACGTCGCATGGACCGCTTCTATGAAACGTCTTCGTCCTTTGACGGTCATGTTTTCAGCGTATTGGAAAAGAGCAGCACGGTCATCCTgcaaaacatctccttttgtatTCCTGAAAGAAAGAACGACACGAGGGTAGATTTTcggattaaaaatgtttatcgtatgtgcatgttttattcttttgctAACATGGTATCCGCAATATTTTTCAACACTGCATTTAGCCGTTTCGGCGAACTTTCGATCCATAAGACTGATCGGAAAATAACTCCAACAAAAAAACGcagtaaacggtaaaactcTGCGCTACTGGTGTGTTTATACAATACTTCGATATGTTACGATGAGAAATGCCAGCATAACGGACAGCTGAAAGCATGTAACAATGGACGCCATCCATATTCAAATTACAAATGGTTGCGTCCAATcttaaataaggtaaaaatggAGTCAGCTTCGAGCAGACGCTTTGTAAAGTAGACTCACTTAAGCCCCAGGAATACCACAGTGTTTAAATCGCATACGGATAGGCCCAAAAAGGCATGCGATCGTGCATATCGTATCACTGTTATACATGTTTGATGTTGGAAATGAACGTCATGTTAATGTTTGGTGGTTTGCTCAGTGTGCACAGCTGTAATGTGATTGTCCCTCACTTTAGAGGACGCATAGCATCGCGCGGCCTCCAATTTTGCATTACTCCATGTCTGTGTAACTTAtctctttttgtattttgatcaTCTGTAAATAGTGAAAGGTTGAGCTCTAAAACCAGGTGAGGAATTCAGTCACACTTTGCAATAGATTTAGAAATGCCcaagtttcatttttgtctgATGCCAaatttcagatgtttttgacTGAATCTGCATTCTGCGGAcgttttatgtcttttttttttttttttttccagtggcATTTTGAGCCCTCTCCAAAGGGCTTTTGGAGTAAcaatatgttttaatgtaataggCTACTATAGCGAATATGCTGTATTCCCTGTGAATGTTGGtgataattttatttgattaaatgtctTGATTTGTGTATTCctatttattaatgatataaGCCTGAACAACTGCATTAAACAACTTTAATCTGTTA

Function

symbol description
sema3c Enables neuropilin binding activity. Acts upstream of or within enteric nervous system development. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in caudal tuberculum and otic vesicle. Orthologous to human SEMA3C (semaphorin 3C).

NR:

description
PREDICTED: semaphorin-3C

GO: NA

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236998.1 True 4927 mRNA 0.47 18 11740732 11783807

Neighbor

gene id symbol gene type direction distance location
lhfpl3 lhfpl3,LOC107680022,LOC107694191 coding upstream 87974 11618061 ~ 11652758 (+)
guca1a guca1a,LOC107590762,LOC107755893,LOC107590961 coding upstream 134161 11602201 ~ 11606571 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding upstream 165495 11573747 ~ 11575237 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding upstream 414039 11324633 ~ 11326693 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding upstream 583988 10998929 ~ 11156744 (+)
slc35e3 slc35e3,LOC107710682,LOC107737854 coding downstream 230779 12014586 ~ 12018965 (+)
mdm2 mdm2,LOC107590969,LOC107710681,LOC107692244,LOC107737846,LOC107694202 coding downstream 236814 12020621 ~ 12027468 (+)
LOC122342854 trhde,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707,LOC107737852 coding downstream 289896 12073703 ~ 12147286 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding downstream 386320 12170127 ~ 12267756 (+)
itih5 itih5,LOC107675976,LOC107555826 coding downstream 1381933 13165740 ~ 13175798 (+)
G27851 NA non-coding upstream 51792 11685713 ~ 11688940 (+)
G27850 NA non-coding upstream 55596 11684883 ~ 11685136 (+)
LOC122343275 NA non-coding upstream 62062 11674000 ~ 11678670 (+)
G27836 kmt2e,LOC107590817,LOC107710662 non-coding upstream 85775 11653472 ~ 11654957 (+)
G27827 NA non-coding upstream 138697 11599745 ~ 11602035 (+)
G28077 NA non-coding downstream 201545 11985352 ~ 11986186 (+)
LOC122342766 NA non-coding downstream 206064 11989871 ~ 11991884 (+)
G28094 NA non-coding downstream 235296 12019103 ~ 12019422 (+)
G28095 NA non-coding downstream 235689 12019496 ~ 12019766 (+)
G28104 NA non-coding downstream 364331 12148138 ~ 12155255 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 49603 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 324505 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 406276 11331545 ~ 11334456 (+)
LOC122342850 LOC107740709 other upstream 1031785 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 1038529 10686097 ~ 10702203 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 13175 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 1366929 13150736 ~ 13154358 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other downstream 1521862 13305669 ~ 13315684 (+)
G28249 LOC107689220,LOC107755152 other downstream 1539481 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 1622122 13405929 ~ 13433606 (+)

Expression


Co-expression Network