tnnt2e (tnnt2e,LOC107658902,LOC107725993,LOC107656364,LOC107710083,LOC108425385)


Basic Information

Item Value
gene id tnnt2e
gene name tnnt2e,LOC107658902,LOC107725993,LOC107656364,LOC107710083,LOC108425385
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2032823 ~ 2042861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237020.1
GCAAATCAGAGCGAAGCAGCGAGGTCACATGACCTGGCAGGTCTGTATTAGGTGAGCTTTGGGTTAGTTTGAAACTGTCTGCTCCCTGGACCCACTAGATAAGACCACATCTCTCATTCTGGTGAGATCTCAGGAATCAACTAGTCATGGCTGATACAGAAGAAGTCATGGAGGAGGAAGTTCAGGAAGTGGAGGAAACCGAAGAGGAAGTGGAAGTGCCGCCTCCGTCAGAGGAAGaACCAGCCCCTGAGGAGGAAGAGCCTGTGGAAGTAGAAGAGGAGCCAGAACCTGAACCACAAGAAGCTCCAGTGGAGGAGGAGGTCGCAGATGAGACAAAACCAAAGCCAAAATTCATGCCTAATATCACTGCTCCAAAGATTCCCGAAGGAGAGAAGGTGGACTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAGGATGAAGAGGAGCTTATTGCTCTGGTCAACAGAATCGACAAGCGGCGCGCTGAGAGAGCCGAGCAGCAGAGAATCCGTGCGGAaaaggagagggagagacaaGCCCGTCTGGCTGACGAAAAGGAGAGAAGAGAGCAAGAGgaacagagaaagaaacaagaTGAAGATGCTAAGAAGAAGAAAGCGCTTACTAACATGACACACCAGTACGGAGGAATCCAGCAGAAGGGCGAGGGCCGCAAGGGGGCGAAGaaacagacggagagagagaagaagaagaagattcTGGCGGACAGGAGGAAGCCACTCAACATCGATCACCTGTCTGAAGATAAACTGAAGGAGAAGGCCAATGAGCTCTGGCAATGGATGATGCAGCTGGAGGCTGAGAAGTTTGATCTCGGCGAGAAGCTGAAGAGACAGAAATATGACATGAATGTTCTCCAGACCCGAATCAATGAACAACAAAAGTTtgCCAAAGGTCGTGGCAAGGGCAAAGTTGGTGGCAGGTTGAGGTAAACGTGCAGCGACTCGAGGGCCACAGAGATCCAGAGGACTTTGTCTCtttcacatttgcatttatagtCATTATAAAACCTTTGTTCTGTTTGACTGCACATGTAGAGACATAAAGTGACATATTTTAGCGATGTCCTGTTTTATTCCTGCATTTTTGTCTTAGACACACAAGTATTGTGTCATTAATTTGATCCCTGCAACATTAAAAGAGTCAAATCCCCTA
>XM_043237021.1
CCGTCAGCCTGTGATTTTCCAGTCTTTTGAATGGAGCACGACCGGCCCTCACTTATTAATGTAAAACGCACGTAACACTGAAGCGAGACGGTTAATCTTCTGCAAAGACTTGGTGGATTTGGTCAGAGACCTCTGGCTGCTGCTGCCTGCTCTCATTATCACAAGGACTCGATTCAAACCAACCTTTATCCAAGATGATCTCTTTGTGAAGAGCCATTAGTTTGAGTGGCATCACATAAGATAGGCTGAAGACACTAACAGCTACTAAGCTGCAAATATTGAGTGAATATAAGATGATAAAACATGTTTCAACTGGATGACCTGCTGACCTTTGGACCTTCAGTCTAAAAGGAATCAACTAGTCATGGCTGATACAGAAGAAGTCATGGAGGAGGAAGTTCAGGAAGTGGAGGAAACCGAAGAGGAAGTGGAAGTGCCGCCTCCGTCAGAGGAAGaACCAGCCCCTGAGGAGGAAGAGCCTGTGGAAGTAGAAGAGGAGCCAGAACCTGAACCACAAGAAGCTCCAGTGGAGGAGGAGGTCGCAGATGAGACAAAACCAAAGCCAAAATTCATGCCTAATATCACTGCTCCAAAGATTCCCGAAGGAGAGAAGGTGGACTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAGGATGAAGAGGAGCTTATTGCTCTGGTCAACAGAATCGACAAGCGGCGCGCTGAGAGAGCCGAGCAGCAGAGAATCCGTGCGGAaaaggagagggagagacaaGCCCGTCTGGCTGACGAAAAGGAGAGAAGAGAGCAAGAGgaacagagaaagaaacaagaTGAAGATGCTAAGAAGAAGAAAGCGCTTACTAACATGACACACCAGTACGGAGGAATCCAGCAGAAGGGCGAGGGCCGCAAGGGGGCGAAGaaacagacggagagagagaagaagaagaagattcTGGCGGACAGGAGGAAGCCACTCAACATCGATCACCTGTCTGAAGATAAACTGAAGGAGAAGGCCAATGAGCTCTGGCAATGGATGATGCAGCTGGAGGCTGAGAAGTTTGATCTCGGCGAGAAGCTGAAGAGACAGAAATATGACATGAATGTTCTCCAGACCCGAATCAATGAACAACAAAAGTTtgCCAAAGGTCGTGGCAAGGGCAAAGTTGGTGGCAGGTTGAGGTAAACGTGCAGCGACTCGAGGGCCACAGAGATCCAGAGGACTTTGTCTCtttcacatttgcatttatagtCATTATAAAACCTTTGTTCTGTTTGACTGCACATGTAGAGACATAAAGTGACATATTTTAGCGATGTCCTGTTTTATTCCTGCATTTTTGTCTTAGACACACAAGTATTGTGTCATTAATTTGATCCCTGCAACATTAAAAGAGTCAAATCCCCTA
>XM_043237022.1
GCAAATCAGAGCGAAGCAGCGAGGTCACATGACCTGGCAGGTCTGTATTAGGTGAGCTTTGGGTTAGTTTGAAACTGTCTGCTCCCTGGACCCACTAGATAAGACCACATCTCTCATTCTGGTGAGATCTCAGGAATCAACTAGTCATGGCTGATACAGAAGAAGTCATGGAGGAGGAAGTTCAGGAAGTGGAGGAAACCGAAGAGGAAGTGGAAGTGCCGCCTCCGTCAGAGGAAGaACCAGCCCCTGAGGAGGAAGAGCCTGTGGAAGTAGAAGAGGAGCCAGAACCTGAACCACAAGAAGCTCCAGTGGAGGAGGAGGTCGCAGATGAGACAAAACCAAAGCCAAAATTCATGCCTAATATCACTGCTCCAAAGATTCCCGAAGGAGAGAAGGTGGACTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAGGATGAAGAGGAGCTTATTGCTCTGGTCAACAGAATCGACAAGCGGCGCGCTGAGAGAGCCGAGCAGCAGAGAATCCGTGCGGAaaaggagagggagagacaaGCCCGTCTGGCTGACGAAAAGGAGAGAAGAGAGCAAGAGgaacagagaaagaaacaagaTGAAGATGCTAAGAAGAAGAAAGCGCTTACTAACATGACACACCAGTACGGAGGAATCCAGCAGAAGGGCGAGGGCCGCAAGGGGGCGAAGaaacagacggagagagagaagaagaagaagattcTGGCGGACAGGAGGAAGCCACTCAACATCGATCACCTGTCTGAAGATAAACTGAAGGAGAAGGCCAATGAGCTCTGGCAATGGATGATGCAGCTGGAGGCTGAGAAGTTTGATCTCGGCGAGAAGCTGAAGAGACAGAAATATGACATCACTCAGCTACTGGCTAGAGTCAGAGATCACCAGAGtgCCAAAGGTCGTGGCAAGGGCAAAGTTGGTGGCAGGTTGAGGTAAACGTGCAGCGACTCGAGGGCCACAGAGATCCAGAGGACTTTGTCTCtttcacatttgcatttatagtCATTATAAAACCTTTGTTCTGTTTGACTGCACATGTAGAGACATAAAGTGACATATTTTAGCGATGTCCTGTTTTATTCCTGCATTTTTGTCTTAGACACACAAGTATTGTGTCATTAATTTGATCCCTGCAACATTAAAAGAGTCAAATCCCCTA
>XM_043237023.1
GCAAATCAGAGCGAAGCAGCGAGGTCACATGACCTGGCAGGTCTGTATTAGGTGAGCTTTGGGTTAGTTTGAAACTGTCTGCTCCCTGGACCCACTAGATAAGACCACATCTCTCATTCTGGTGAGATCTCAGGAATCAACTAGTCATGGCTGATACAGAAGAAGTCATGGAGGAGGAAGTTCAGGAAGAAGCTCCAGTGGAGGAGGAGGTCGCAGATGAGACAAAACCAAAGCCAAAATTCATGCCTAATATCACTGCTCCAAAGATTCCCGAAGGAGAGAAGGTGGACTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAGGATGAAGAGGAGCTTATTGCTCTGGTCAACAGAATCGACAAGCGGCGCGCTGAGAGAGCCGAGCAGCAGAGAATCCGTGCGGAaaaggagagggagagacaaGCCCGTCTGGCTGACGAAAAGGAGAGAAGAGAGCAAGAGgaacagagaaagaaacaagaTGAAGATGCTAAGAAGAAGAAAGCGCTTACTAACATGACACACCAGTACGGAGGAATCCAGCAGAAGGGCGAGGGCCGCAAGGGGGCGAAGaaacagacggagagagagaagaagaagaagattcTGGCGGACAGGAGGAAGCCACTCAACATCGATCACCTGTCTGAAGATAAACTGAAGGAGAAGGCCAATGAGCTCTGGCAATGGATGATGCAGCTGGAGGCTGAGAAGTTTGATCTCGGCGAGAAGCTGAAGAGACAGAAATATGACATGAATGTTCTCCAGACCCGAATCAATGAACAACAAAAGTTtgCCAAAGGTCGTGGCAAGGGCAAAGTTGGTGGCAGGTTGAGGTAAACGTGCAGCGACTCGAGGGCCACAGAGATCCAGAGGACTTTGTCTCtttcacatttgcatttatagtCATTATAAAACCTTTGTTCTGTTTGACTGCACATGTAGAGACATAAAGTGACATATTTTAGCGATGTCCTGTTTTATTCCTGCATTTTTGTCTTAGACACACAAGTATTGTGTCATTAATTTGATCCCTGCAACATTAAAAGAGTCAAATCCCCTA
>XM_043237024.1
TCCAGTCTTTTGAATGGAGCACGACCGGCCCTCACTTATTAATGTAAAACGCACGTAACACTGAAGCGAGACGGTTAATCTTCTGCAAAGACTTGGTGGATTTGGTCAGAGACCTCTGGCTGCTGCTGCCTGCTCTCATTATCACAAGGACTCGATTCAAACCAACCTTTATCCAAGATGATCTCTTTGTGAAGAGCCATTAGTTTGAGTGGCATCACATAAGATAGGCTGAAGACACTAACAGCTACTAAGCTGCAAATATTGAGTGAATATAAGATGATAAAACATGTTTCAACTGGATGACCTGCTGACCTTTGGACCTTCAGTCTAAAAGGAATCAACTAGTCATGGCTGATACAGAAGAAGTCATGGAGGAGGAAGTTCAGGAAGAAGCTCCAGTGGAGGAGGAGGTCGCAGATGAGACAAAACCAAAGCCAAAATTCATGCCTAATATCACTGCTCCAAAGATTCCCGAAGGAGAGAAGGTGGACTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAGGATGAAGAGGAGCTTATTGCTCTGGTCAACAGAATCGACAAGCGGCGCGCTGAGAGAGCCGAGCAGCAGAGAATCCGTGCGGAaaaggagagggagagacaaGCCCGTCTGGCTGACGAAAAGGAGAGAAGAGAGCAAGAGgaacagagaaagaaacaagaTGAAGATGCTAAGAAGAAGAAAGCGCTTACTAACATGACACACCAGTACGGAGGAATCCAGCAGAAGGGCGAGGGCCGCAAGGGGGCGAAGaaacagacggagagagagaagaagaagaagattcTGGCGGACAGGAGGAAGCCACTCAACATCGATCACCTGTCTGAAGATAAACTGAAGGAGAAGGCCAATGAGCTCTGGCAATGGATGATGCAGCTGGAGGCTGAGAAGTTTGATCTCGGCGAGAAGCTGAAGAGACAGAAATATGACATGAATGTTCTCCAGACCCGAATCAATGAACAACAAAAGTTtgCCAAAGGTCGTGGCAAGGGCAAAGTTGGTGGCAGGTTGAGGTAAACGTGCAGCGACTCGAGGGCCACAGAGATCCAGAGGACTTTGTCTCtttcacatttgcatttatagtCATTATAAAACCTTTGTTCTGTTTGACTGCACATGTAGAGACATAAAGTGACATATTTTAGCGATGTCCTGTTTTATTCCTGCATTTTTGTCTTAGACACACAAGTATTGTGTCATTAATTTGATCCCTGCAACATTAAAAGAGTCAAATCCCCTA

Function

symbol description
tnnt2e Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Predicted to be involved in muscle contraction and sarcomere organization. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

NR:

description
PREDICTED: troponin T, cardiac muscle-like isoform X5

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237020.1 False 1230 mRNA 0.48 19 2032823 2042861
XM_043237021.1 True 1448 mRNA 0.47 19 2032823 2042460
XM_043237022.1 False 1227 mRNA 0.48 19 2032823 2042861
XM_043237023.1 False 1119 mRNA 0.47 13 2032823 2042861
XM_043237024.1 False 1320 mRNA 0.46 13 2032823 2042443

Neighbor

gene id symbol gene type direction distance location
arl1 arl1,LOC107576237 coding downstream 8614 2022325 ~ 2024209 (-)
slc5a8 LOC107710085 coding downstream 32748 1995442 ~ 2000075 (-)
foxm1 LOC107658881,LOC107710101,LOC107656265 coding downstream 47765 1979107 ~ 1985058 (-)
pgm3 pgm3,LOC107579473,LOC107656266,LOC107658887 coding downstream 60413 1965852 ~ 1972410 (-)
ccnc ccnc,LOC107656373,LOC107583980,LOC107579661,LOC107726029 coding downstream 72780 1954054 ~ 1960043 (-)
tmem168a tmem168a,LOC107658875,LOC107726047,LOC107710117,LOC107656353 coding upstream 372805 2415666 ~ 2423463 (-)
gpr85 gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006 coding upstream 424226 2467087 ~ 2471272 (-)
ppp1r3aa LOC107658872,LOC107584007,LOC107726069 coding upstream 456913 2499774 ~ 2504213 (-)
tfec LOC107584009,LOC107725982,LOC107658865,LOC107710111,LOC107580185,LOC107656331 coding upstream 740600 2783461 ~ 2823147 (-)
lta4h lta4h,LOC107658863,LOC107656327,LOC107744078 coding upstream 792987 2835848 ~ 2845005 (-)
G25277 NA non-coding downstream 167 2032241 ~ 2032656 (-)
G25240 NA non-coding downstream 39067 1991992 ~ 1993756 (-)
G25190 NA non-coding downstream 129362 1903185 ~ 1903461 (-)
G25188 NA non-coding downstream 134566 1896886 ~ 1898257 (-)
G25185 NA non-coding downstream 187423 1845129 ~ 1845400 (-)
LOC122343450 NA non-coding upstream 63903 2106764 ~ 2118325 (-)
G25298 LOC107549254,LOC107563058 non-coding upstream 119669 2162530 ~ 2163319 (-)
G25299 LOC108267243 non-coding upstream 120565 2163426 ~ 2163708 (-)
LOC122343454 NA non-coding upstream 124444 2167305 ~ 2182669 (-)
LOC122343417 NA non-coding upstream 160724 2203585 ~ 2289119 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other downstream 130160 1898403 ~ 1902663 (-)
ccdc167 ccdc167 other downstream 377997 1653591 ~ 1654826 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other downstream 414525 1609360 ~ 1618298 (-)
selenoo2 selenoo,si:dkey-14d8.2,LOC107579362,LOC107711485 other downstream 428133 1594284 ~ 1604690 (-)
LOC122342802 LOC107711465,LOC107656235 other downstream 446634 1580480 ~ 1586189 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other upstream 92 2042953 ~ 2088579 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other upstream 48490 2091351 ~ 2097801 (-)
dock4b dock4b,LOC107656358,LOC108425388 other upstream 256774 2299635 ~ 2375716 (-)
LOC122342907 NA other upstream 429423 2472284 ~ 2473068 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other upstream 957021 2999882 ~ 3012214 (-)

Expression


Co-expression Network