six4b (six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441)


Basic Information

Item Value
gene id six4b
gene name six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16925017 ~ 16932206 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237031.1
TATCCACACCACACAGCGGCCAGATACCTGATCGCGCTTGGATGGAGGGGCGAAACCCGATCGCCTGATGTGCTGCCTGAAACCCAGAGGAGTGACTTATCAGGACGCGCTCAAAATGTCTTCTTCCTCAAGCGAGGTCATTAGTGCCGATGAGATCAAGAGGGAGAATCGTGGGAGTGTCAAGCTGTCAGTGCTGGACCCCGCGGAGTTGCCGATGGAGAATGCCGAACTTTTGGACTGCTCGCCGGCCTCGCTGGCCTTCTCCCCCGAGCAGGTCGCGTGCGTCTGCGAAGCGCTGCTGCAGGGCGGGAACGTGGAGCGCCTGGCCAGGTTCCTCTGGTCACTGCCGCAGAGCGACCTGCTGCGGGGGAACGAGAGCATCCTGAAAGCGCAGGCGATAGTCGCGTTTCACCAGGCCCGCTACCAAGAGCTCTACTGCATCCTGGAGAACCACAGCTTCAGCCCGTCAAACCACTCGTCTCTGCAGGACATGTGGTACAAGGCGCGCTACATCGAAGCGGAGAAGGCGCGGGGCAGACCGCTGGGTGCCGTGGACAAGTATCGCTTGCGCAGGAAATACCCGCTGCCTCGGACTATCTGGGACGGAGAGGAGACCGTGTATTGTTTTAAAGAGAGGTCTAGGAACGCGCTGAAGGATATGTACAAGCGGAACCGGTATCCGTCTCCGGCCGAGAAACGAAATCTGGCCAAAATGACAGGACTTTCTCTGACGCAGGTCAGCAACTGGTTCAAAAACAGGAGGCAGAGGGACAGAAATCCATCCGAGGCGCAGTCGAAAAGtgagtcTGATGGCAATCACAGTACAGAAGATGAGTCCAGTAAAGGCCAGGAGGACTTGTCACCACGTCCCCTCTCCAGCGGCTCTTCTAGCTCAGTCGCACACGGAACAGCCCCCCCTACAGTTTACTCGGATGGAGGAACAACCGTCATCCAACAAATCGGTGATGTCAAAATGCATTCACACATAGCTGGAGGAATGAGTTTTAACGGTGATCTGGCAAGCGTTAACGCTCACTACATCAACGGTGGAGCCTACGTTCAGTCACACAGTAGCAATGCTCTCCTGAATGGACTTGGCGCCACGAGCGGCCATTTCTTGACCTTTGATCCCCAGAGGGTCTCCCATCACAGTCAGGAGAGGCTGTTAGGTGGGTCTTCTGTGTCTTATGCTCCGTTCTCGATGGGGGTTTCTGAAACTGCCTCTGGAAAGCTGGAGGCCATGCAGACTCTGGTTTCCAATGCTGAAGATGGAGTCATTTCTTCAGTGGTGTCCTTCGCTTCGGCCCCCTCCACTCCATCCACTACCTCAGGAGGCCTTCATCTCAGCAGTTACAGTGTGGTCAATCTCCCTGGAAGTGAAACCACCATGGGGCTTCCTCCTTTAATGCTGCCCCCATCCACAACATCATCCACTCACGGCTCTGCTCCTTTGGGGAACGTGGTCAGTGACTCTCCTCAACACTCGAGCCAAACCCTTCTTTACACCCAGACTGTGAAGCAGGAGCCTTTGGATGTGTCTGGAAGCTACACTCACCCTTTCGAAATGCCCCTGGAGCAAGGCAGCAACCTGGGCTACACAGCCTCccttttcctttcttcttcCTCTACCGGTGGTTCACTTCCCCCTACCGTCACAGCCACGGTCACCTCTGCCCTCTCCGGCAACGAGGTACACCACACTCTGAATCAAGCTGGACGTGGCCTTCAGGAGGACAGCGTAGCCCTGTCTTCAGACTACAGATCTCAAGATGTTCAGCTGCCCAACAGCCTGCAAGTTGTGTCTAGGGCAGGAGAAGGCCCAGTCAGGGTTATTTGTGGGGATCTGGACCTGGAAGGGAAAGAGCTGGCCAAGCTTCAGACTGTTCAGATGGACGATGATGGAAGTGACCTATGATGATACCGTTAGCAACCAAGAGCTGCATTTCACTGGTTTTGTCGCGCCCCATTGTGCCCTTACAGACTTTGTAAGCACAAACCATTTTGAACCCTGATGATGGATATAAAATGCGAACAGTGCCTTCCTGTCCTCAGATATCCCAACTTGCACTAAGAGGGCTGCAGAATGTACCAGGCAATGCACTGACCTTCTGAAGATTATTTACATGCACTGTCTTTACTCTCAcctcataaaaatgtactaaaagaCCAGTTAAAAAGCACAAACGTGCTTGGAAtcaaaaaatgcagctttatcgtgattgttttgtttgaacAAGATTTTATTGAAGCACAGATgcgttttttgttgttgttgttgttgttgtttatggtcttttgtatttaaattcttTGAGTGTGACAATGCAAATTTGATAAAGGTTATTTTGTTATGTTGGACTTTTATGTTACAGAATTTTGGATTCGAACTCTCTTTCTACGCTTCCCAACGTGGACTTTCAAGTATATACTCTTGACCATTAGTGCAACTGGTCACATGTGCCTTCTTTATAAACTGTTAACATGCTAGAAAGCTAGGCTAGAAAACAAGCCATTTGTTTGCAAGAATTCATCAGGAACAACTGAAGTacaagtgtttgtttttgtttctttgtgtgaCGACTGTTTTGCAATGATTTGGACgtgtttttcatttcctttaGCGTTAGAAAATGCACTGTGAGCTTTGTAGGGCACGATAAATATCCATGAGGTGCATGGTCGCATTTATGGCAAACGTTCATGAGTGACATAGTCCAGCAAATGTTCATGACTGAATTACAGTAAGAATTTCAATTTAATATCGGCAAATTTGCATGAGGGAGAAAGATTCCTCACACCGTTTTGGCAGCAGGCTCAAGTTAGTCACACAAATTTGCTTACCAACAGCAAGCTGCTTggtttaaaagtgacttctgtgTGAGCAGTGCGCAATATACAAATCTGCATCTGTTCAGCCATGAACGTTTGCTATGTGACCGCACCTTTACACCAGAAATGAGCTCTGTACATACTGCAAGAACCACAAGAAACCTTAAAACGTCAATCCTGCTTGAAAGAAACCTATTTTTCTAAACCCTTCCAccctattaaatattta

Function

symbol description
six4b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in ectoderm; lateral plate mesoderm; neurogenic field; otic vesicle; and sensory system. Orthologous to human SIX4 (SIX homeobox 4).

NR:

description
PREDICTED: homeobox protein SIX4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237031.1 True 3058 mRNA 0.49 3 16925017 16932206

Neighbor

gene id symbol gene type direction distance location
rhoj rhoj,LOC107697308,LOC107743974,LOC107701469,LOC107707080,LOC108257930 coding upstream 86593 16822113 ~ 16838424 (+)
chrna2b chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496,LOC108434998 coding upstream 214861 16701043 ~ 16710156 (+)
LOC122342226 NA coding upstream 307799 16615345 ~ 16617218 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding upstream 467720 16436391 ~ 16457297 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding upstream 497831 16398632 ~ 16427186 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding downstream 5593 16937799 ~ 16939687 (+)
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding downstream 67699 16999905 ~ 17026338 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding downstream 101715 17033921 ~ 17037157 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding downstream 108651 17040857 ~ 17083120 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding downstream 190227 17122433 ~ 17176497 (+)
LOC122342883 NA non-coding upstream 13675 16897515 ~ 16911342 (+)
G29026 NA non-coding upstream 172428 16748718 ~ 16752589 (+)
LOC122343214 LOC107589090,LOC107723504,LOC107697312,LOC107563691,LOC107746370,LOC107701470 non-coding upstream 224799 16698521 ~ 16700218 (+)
G29011 NA non-coding upstream 315013 16609724 ~ 16610004 (+)
G28991 NA non-coding upstream 384857 16519411 ~ 16540160 (+)
G29078 NA non-coding downstream 8810 16941016 ~ 16941310 (+)
G29086 NA non-coding downstream 105067 17037273 ~ 17038220 (+)
G29089 NA non-coding downstream 114665 17046871 ~ 17085857 (+)
LOC122342667 NA non-coding downstream 158333 17090539 ~ 17119106 (+)
G29178 NA non-coding downstream 286936 17219142 ~ 17219514 (+)
G28982 NA other upstream 450636 16473898 ~ 16474381 (+)
G28899 NA other upstream 939291 15985219 ~ 15985726 (+)
G28891 NA other upstream 1083162 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1269739 15565499 ~ 15655278 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 1369335 15439334 ~ 15555682 (+)
atp5mj NA other downstream 106213 17038419 ~ 17040830 (+)
G29526 NA other downstream 1368209 18300415 ~ 18301189 (+)
G29545 NA other downstream 1504254 18436460 ~ 18461317 (+)
G29642 NA other downstream 1950973 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2358014 19290220 ~ 19342911 (+)

Expression


Co-expression Network