LOC122342885 (LOC107749047,LOC107728228,LOC107671223)


Basic Information

Item Value
gene id LOC122342885
gene name LOC107749047,LOC107728228,LOC107671223
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16484567 ~ 16498839 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237033.1
TACCCGtatttgatcataaaaacaagtcttaaacatatatttttaaaataagtatataaatcCATAGTGAAAtaagtcatttattattatgattgtttaataaattatattttttgtaaaatgaccAGCTTCTCCTCGTAGCCTCAGCACTGCTCTAAACAGGATGAACCTtcctgagaaaaagaaaacgcaGATTATGTTTTACATGGGACGTTTACACTTGATCGTAAGagcttttcttttcaaaaactgatcattaatctttttatttgttcttgtgGGAAGATACATAAACTTAATGAGAAAGCAAAGACATTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatcgGGAGATGAAGAGTATTTTAAAGTCTGCAGcTCAGTTCATCAGAAGAAATCAGAAGCAgagcccagctgtgtgtctatgaagagtgACTGCTCTATGCATCAGCCAAGAAATTTTAAGAGTGAAGATTCGCAGCCTGGGTTCGGttcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAAATTTTAAGAGACGAGTCCTCAACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGATGCAGAGAAAGCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCtggacaagacaaagacaacagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGAGAATCAGGATGTCCAGCTcatatttccacttcctttTAGAGAAATCAACTTGATGAAGGATAAAACACTCAGTCTTTTAGATCTTCTTCATGTCTTTTTCCCTGAaactaaagaaatggaaatatccagtgatgaatataaagtattgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTAGACTTTAAGAGTAAAGTGAATCTGTGTAGTATATCTGAGTCAGCCTCAGTTgatgtgctgctgatgaacctgattgtggggaacctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTAAGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCTGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatcctccagaccaacatcaaacatgagaaGGACTATGAGAAGAACCTGACGGATGAAGACATGATCTTCAAACTGGGGAAACTGGCTTTTCAGCAGCTAGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGACATTGATGAGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCTGGGGAAAGTCTTCTGCTTCGTTCACCTTAGCCTTCAGGAACATCTAGCAGCACTATATGCACACTTATCCTTAACAATAAAGAAGATAAATGTGTTTGACCAAATCCAACAAAAATCCTTCTTTACTGTCATCTTTAATGAAATTGGACCATTATCTGAGCTGCATCAGAGAGCTGTGGATGAGTCTCTACAGAGTAAGAATGGACATCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCCTACAACAAAAGGGAAACAGTTCAGTTCATCAAAGAGAAGATCTGGGAGAATCACTCTTCAGAtaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAAAAATAAGAGAAATCAAACTCTCCTTTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAAAAGTTTATTGGAAAACAACATACAGGAGAAGAAGTTCTTCAGTATCTGTTACCTGTGGTCAAAGAATCCAGATCATTTTGGCTACGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcatactcaaacatcctgagagagctggacctgagtaacaatgaagtgcaggattctggagtgaagctgctctctaaacgactgaagagtccaaactgtcatctggagatCCTGAGGCTATGTGGATGCAAACTCACAGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagacagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaaaagtccaaactgtcatctggagattctgagGCTATGTGGATGCAAACTCACTGCTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcttgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactctcatctggagattctgagGCTATGTGGATGCAAACTCACAGCTCAGTCTTGTGAAAgcttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattttggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggaGTTATGA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237033.1 True 3143 mRNA 0.42 9 16484567 16498839

Neighbor

gene id symbol gene type direction distance location
LOC122342598 NA coding downstream 1391 16477791 ~ 16483176 (-)
LOC122343883 NA coding downstream 464005 16020444 ~ 16020562 (-)
LOC122343926 NA coding downstream 464408 16020041 ~ 16020159 (-)
LOC122343872 NA coding downstream 466392 16018057 ~ 16018175 (-)
LOC122343847 NA coding downstream 466791 16017658 ~ 16017776 (-)
LOC122342596 NA coding upstream 39141 16537980 ~ 16542902 (-)
LOC122342599 LOC107749047 coding upstream 74288 16573127 ~ 16593094 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding upstream 211685 16710524 ~ 16724794 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding upstream 249877 16748716 ~ 16821470 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding upstream 341866 16840705 ~ 16851156 (-)
G28970 NA non-coding downstream 19888 16464445 ~ 16464679 (-)
G28966 NA non-coding downstream 23056 16460762 ~ 16461511 (-)
G28935 NA non-coding downstream 64428 16412527 ~ 16420139 (-)
G28933 NA non-coding downstream 64611 16411860 ~ 16419956 (-)
G28916 NA non-coding downstream 100897 16378700 ~ 16383670 (-)
LOC122342601 NA non-coding upstream 46115 16544954 ~ 16545621 (-)
LOC122342602 NA non-coding upstream 51494 16550333 ~ 16551004 (-)
G29012 NA non-coding upstream 110797 16609636 ~ 16609999 (-)
G29021 NA non-coding upstream 202229 16701068 ~ 16701671 (-)
LOC122342882 NA non-coding upstream 409370 16908209 ~ 16924965 (-)
G28898 NA other downstream 551703 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 872992 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1456904 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 1673856 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 1779945 14687873 ~ 14704622 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 208935 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 387314 16886153 ~ 16900295 (-)
G29135 NA other upstream 508088 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 619504 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 1138184 17637023 ~ 17638742 (-)

Expression


Co-expression Network