ucmaa (ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340)


Basic Information

Item Value
gene id ucmaa
gene name ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2923221 ~ 2927098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237079.1
CTCCTCCTTTCCTTCGCCttccctcttctctctctcttaaagacgcgctctgtctctctctaagGTCTCAGGACTTTTGCTGTGGTTCTGGTACCTGCGCAAGACACACTCATCTTCTGAAGGATGGCCGGGACTCACGCTGTGCTGCTCACACTGCTGCCCACCGTCCTCGTGCTGATTGTGTTGGCCGGAGTTGAAAGTGCAGCTGTTAAAGATGTAAAAGACAAAGCTCAAGCAGGAACATCTAAACGAGTTTTCATGCCAGCATCTGATGCCTCAAACTTTTTCAAACGCCGCGGTCGCAGATCCCCAACAACTTATGAAGAGTACTATGCGGAGCAGAGGGTGAAGATGTCTGCAAACGAGCGAAGGAGAGAGCATTTAGAGGAACAAAACAACGAATACGAGAACTATTTAGAGGAGGAGCGCGACGAACAGTACGAGAGGACCAGAGAGAAGAACGAGCAGTGGAGAGAATTCCACTACGATGGGCAATACCCACGATACCCTCACCACCGCCAGTACGCTTGAGCGCATAAGACCGTGTGAAATGAGTGGATAACCATCATTTGAGGGATACTTTCATgacataatataataagtacTCGAAACATTTAAGCACTTACAGATTTAAAGCTTTTAATacgtgtaaaaataaaagggtttgtgtgtttgga
>XM_043237080.1
CTCTCCTCCTTTCCTTCGCCttccctcttctctctctcttaaagacgcgctctgtctctctctaagGTCTCAGGACTTTTGCTGTGGTTCTGGTACCTGCGCAAGACACACTCATCTTCTGAAGGATGGCCGGGACTCACGCTGTGCTGCTCACACTGCTGCCCACCGTCCTCGTGCTGATTGTGTTGGCCGGAGTTGAAAGTGCAGCTGTTAAAGATGTAAAAGACAAAGCTCAAGGAACATCTAAACGAGTTTTCATGCCAGCATCTGATGCCTCAAACTTTTTCAAACGCCGCGGTCGCAGATCCCCAACAACTTATGAAGAGTACTATGCGGAGCAGAGGGTGAAGATGTCTGCAAACGAGCGAAGGAGAGAGCATTTAGAGGAACAAAACAACGAATACGAGAACTATTTAGAGGAGGAGCGCGACGAACAGTACGAGAGGACCAGAGAGAAGAACGAGCAGTGGAGAGAATTCCACTACGATGGGCAATACCCACGATACCCTCACCACCGCCAGTACGCTTGAGCGCATAAGACCGTGTGAAATGAGTGGATAACCATCATTTGAGGGATACTTTCATgacataatataataagtacTCGAAACATTTAAGCACTTACAGATTTAAAGCTTTTAATacgtgtaaaaataaaagggtttgtgtgtttgga

Function

symbol description
ucmaa Predicted to be involved in embryonic skeletal system development. Predicted to act upstream of or within regulation of osteoblast differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in asteriscus; ceratohyal cartilage; hypobranchial cartilage; and neurocranial trabecula. Orthologous to human UCMA (upper zone of growth plate and cartilage matrix associated).
ucma Enables BMP binding activity. Predicted to be involved in embryonic skeletal system development. Predicted to act upstream of or within negative regulation of osteoblast differentiation. Predicted to be located in aggresome and perinuclear region of cytoplasm. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
PREDICTED: unique cartilage matrix-associated protein-like isoform X2

GO:      GO:0005578

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237079.1 True 677 mRNA 0.47 5 2923223 2927098
XM_043237080.1 False 676 mRNA 0.47 5 2923221 2927098

Neighbor

gene id symbol gene type direction distance location
phyh phyh,LOC107743808 coding upstream 2978 2916161 ~ 2920243 (+)
LOC122342536 NA coding upstream 9742 2912178 ~ 2913479 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding upstream 14526 2907459 ~ 2908695 (+)
elk3 elk3,LOC107743764 coding upstream 60832 2847274 ~ 2862389 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding upstream 281384 2622539 ~ 2641837 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding downstream 10974 2938072 ~ 2941597 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding downstream 16826 2943924 ~ 2994499 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding downstream 79775 3006873 ~ 3012104 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding downstream 384555 3311653 ~ 3381172 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 652530 3579628 ~ 3601006 (+)
LOC122343411 NA non-coding upstream 97432 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 135564 2726802 ~ 2787657 (+)
LOC122342395 NA non-coding upstream 203860 2686424 ~ 2719361 (+)
LOC122342427 NA non-coding upstream 243478 2666342 ~ 2679743 (+)
LOC122342588 NA non-coding upstream 260176 2662114 ~ 2663045 (+)
G25453 NA non-coding downstream 4010 2931108 ~ 2931859 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding downstream 8064 2935162 ~ 3030892 (+)
G25456 NA non-coding downstream 90469 3017567 ~ 3024764 (+)
G25502 LOC107573038 non-coding downstream 481903 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 493538 3420636 ~ 3429146 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 927685 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1135125 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1250262 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1591378 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1631997 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 172639 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 192417 3119515 ~ 3306758 (+)
G25514 NA other downstream 554531 3481629 ~ 3502094 (+)
G25551 NA other downstream 810404 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1302531 4229629 ~ 4231092 (+)

Expression


Co-expression Network