net1 (net1,LOC107560732,LOC107586493)


Basic Information

Item Value
gene id net1
gene name net1,LOC107560732,LOC107586493
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5454172 ~ 5476182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237090.1
TCGCAAACCTCCCCCTTCAATTCACCCCCAAAATCACTAATTTTAACTGTACCCGGTTTTTATAAACGGTATACAGTAGCGCGGTCCAGGTCCATATTTTCAAATGGAGGAAACCGACGGATCTCCAGCGCCGATGGCGGAGCCGGCGAACGAAAGACCGCGGAGGAACAAGAGAAAGTCGTCGGTGGTGGATGTCGACGCGTCCCCAGAGCGCAATTTCAAACGGCCATCATTGAGACGAGGAAGTTCCTTTACTTTCCTGACACCTGGACCCCAGTGGGACTTCACACTGAAACGCAAGCGCAGAGAGAAGGATGACGCGGACGCAGTCAGTCTATGCAGCTTTGACTTTAAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGCCTCATTTCGGGGTGATGGGCGGTCCCCGGGCGTGCCCCAACAAAAACCCTGCAGTAAGGCCGCAGCTCCCACACCACCCAAGCGACGAAACAGCACGCTCTGGTCCGAGACCCTGGACGTCCATCAGAAAGGAACCTTTTCCACCAAAGAGATTAAGAGACAAGAGGCTATTTTTGAGCTGTCTCGAGGAGAACAGGACCTGATTGAAGATCTGAAATTAGCCCGAAAGGCGTACCATGACCCAATGCTTAAACTTTCTATCATGTCTGAAGAGGAGTTGACAGCCATCTTTGGAGACTTGGATGCGTATATTCCTCTTCATGAAGATCTTCTCGCTGATTTGGCGAAGGCTACAGGCCCAGATGGCACAGTGGGACAGATCGGCAAGATTGTTGTGGACTGGCTGCCAAGGTTAAACGCGTACAGGGCATATTGCAGTAACCAGCTGGCTGCCAAGGCCTTGCTTGACCAGAAGAAACAGGACCCAAGAGTTCAGGACTTTCTACAGCGCTGCCTTGAGTCACCTTTCAGCAGAAAACTAGACTTGTGGAGCTTCTTAGACATCCCTCGTTCACGATTGGTCAAATACCCCCTTCTTCTGAAAGAGATTTTAAGACACACACCACCAGACCACCCAGACACAGCAAGTCTTGAGCAGGCAATAAGCATCATTCAGGCTGTTTTGGCTGACATAAACATGAAGAAAGGGGAGTCTGAGTGTCAGTACTATATCGATAAGCTGGAATATTTGgatgacagacagaaagaccCTCGCATAGAGCAGTGCAAGAGCCTGCTTTGCCATGGGGAACTTCGCAACAAAAGTGGCACGAAGTTGCACGTGTTTCTCTTCACGGAGGTTCTGGTCCTGACCCGGCCTGTTATGCGGAATGACCGGCATTGTTTCCAGGTGTACCGCCAGCCGATCCCAGTGCAGGACCTTGTTTTGGAAGACCTGCAGGATGGAGACGTCCGCATGGGTGGCTCATTCCGAGGGGCCTTTAGTAATGCTGATAAAGCCAAGAACATCTTTCGAGTACGCTTCCAGGACACATCTCAGGGTCAGTCCCACACACTGCAGGTCAATGACATCTTCCACAAGCAACAGTGGCTCAACTGCCTCCGCACTGCCATGTCGACCCAGAAAGATTCGTCACTCCCTGAAAGTGAATCCTTGACCACCCCTGCCAGTACCGACGTTTGCACCAAACGACGCTCGTCTTCCGTCTCTGCTATCATCCATATGGAAGAGACGGATGAGAACTGTCCACGGGCCGCAGCCTCCGCCCCTTCGTCCCCCAGCTCCGAGGAGCCCCCCAGCCCCACACCCTCCGCAACCTCCACCCTCTCCTCGtcctcttcatcatcttcaatTTCCGCCCCCTCCCTGCCCCGCAAATCCAAAAAGGACAAGCGTTCAATCTGCTCGTTGGGCAAGAGAAAGGAGACCATGGTGTAGAGACTAAGCTATCCCAGGGTACACATGGAATGACACTGTGTGGAGGActtgtatttatgtgtgtgtatggactGTGTGTTTCTACAGCAGTGTTTTTGTTACTGTCCACAATGGCAGCTATTATTACCAAATCCCTCCCCCCCAAAACCCTCCCAGGTCCACGTGGGCCACACCAGTACCAGAAAGACAGTATTTGTGAGGCGACTGTGTGGATCTCAAGGGACTGAAGTTGAAGACATCCCgcacattttaaatcacagcGTTGATTTGTGTGAAAGCGCAAGATCACACATCTAGTCTTGTTTACTGTTAGTTTggtcatatttttgttttattttattaatatagattttttttgtaattaaagttttacttttttaaaacttcaaTAAGATATTTACTGtagctcttttttgtttttattaaaagcactGTGTTTAGCTTTTAGAAGGGAAGAATACccactgaggaaaaaaaaaaaaaagataaaatatccTAAGCAATGAATACTTTGTAAAAGTCTGATTCATAGCTCTACTGGAAGGCAAGTCTTACAAGTACATTCCCATTAAATATTAGGTTTTGTCAGctccattttatatttaaatcagaaaataacTTATCAAGACAAGAAAATCGTAGAAATGTGATTTCAAACtgtccaaaatgtaaaatttgccATTTTGTTAATGCAAAAATCAAACCTGAGCCAAAAGTTTTACCAAAATGATGGATGAATATTTCAATGTAGCATCTTGCATGGAGCTTTACTTGTTGAGTCCTGCCTGTATTATCATGAGGGCCCAGTGCATGTACATGCTTGTCAAAGCAGAAAGTTGTTGTTGTAGATACGGACTGTCAATTAGAAGAAAAGGTGAATGTTGAATGAGGGCTTGAGAAATGTTGATGTGAGATTTAGAAGGAAATTTTGGAAAAGAGTTGGATACGACTAGATGGACTTGATGATTGACGCTACTTGATATTAGCAACCGTTCATGGACATTGGTttgctgttatttatattttcgtAGTGTCTTCATGAAGGAGGAAGGTTTGATACACTGGTTTAAAAGCCAGGATGTTTTGAGAAGGAACATGAAAGTATGTTTAGGAGAATGAACTGTTTAAAGAAGGTTAATGTATGTTATGACCACTTCAAAATGTCTGTAAAGGTTTGTAAATGAGAAAGGATGTACATTATTGGAAGGACTGTGGTGGcctgtatgtacagtatgtggtgTAAAAATCAACtattaaaagaacaataaagGTCTGTGTAAGATTTGCATCTGA
>XM_043237091.1
ATGTCCCTAGAACAAAGTTAGAGATTGTTAGAGTACACACCGAGAGTGTGTTTAGAAGTTAGAAAGCTCCGCTCAGGCGGACAATCAGAGGATAGGGGGAAGGTGAGGTTTTCAGACCCCTTATGTTACATCACGTATTTATTTAAGAATCACTTGTGGATTACTGCCGACCTTGGAAATAAGAGAAAACAACCAGTGGATTTTATTGAAAGAAATGGTGGCTTACGATGAACCCTGTGTGGTACCTATCAAACGGACTTTACAGAAGATAGACTACCAGAACCAGACTTACAAAGAACTAGAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGCCTCATTTCGGGGTGATGGGCGGTCCCCGGGCGTGCCCCAACAAAAACCCTGCAGTAAGGCCGCAGCTCCCACACCACCCAAGCGACGAAACAGCACGCTCTGGTCCGAGACCCTGGACGTCCATCAGAAAGGAACCTTTTCCACCAAAGAGATTAAGAGACAAGAGGCTATTTTTGAGCTGTCTCGAGGAGAACAGGACCTGATTGAAGATCTGAAATTAGCCCGAAAGGCGTACCATGACCCAATGCTTAAACTTTCTATCATGTCTGAAGAGGAGTTGACAGCCATCTTTGGAGACTTGGATGCGTATATTCCTCTTCATGAAGATCTTCTCGCTGATTTGGCGAAGGCTACAGGCCCAGATGGCACAGTGGGACAGATCGGCAAGATTGTTGTGGACTGGCTGCCAAGGTTAAACGCGTACAGGGCATATTGCAGTAACCAGCTGGCTGCCAAGGCCTTGCTTGACCAGAAGAAACAGGACCCAAGAGTTCAGGACTTTCTACAGCGCTGCCTTGAGTCACCTTTCAGCAGAAAACTAGACTTGTGGAGCTTCTTAGACATCCCTCGTTCACGATTGGTCAAATACCCCCTTCTTCTGAAAGAGATTTTAAGACACACACCACCAGACCACCCAGACACAGCAAGTCTTGAGCAGGCAATAAGCATCATTCAGGCTGTTTTGGCTGACATAAACATGAAGAAAGGGGAGTCTGAGTGTCAGTACTATATCGATAAGCTGGAATATTTGgatgacagacagaaagaccCTCGCATAGAGCAGTGCAAGAGCCTGCTTTGCCATGGGGAACTTCGCAACAAAAGTGGCACGAAGTTGCACGTGTTTCTCTTCACGGAGGTTCTGGTCCTGACCCGGCCTGTTATGCGGAATGACCGGCATTGTTTCCAGGTGTACCGCCAGCCGATCCCAGTGCAGGACCTTGTTTTGGAAGACCTGCAGGATGGAGACGTCCGCATGGGTGGCTCATTCCGAGGGGCCTTTAGTAATGCTGATAAAGCCAAGAACATCTTTCGAGTACGCTTCCAGGACACATCTCAGGGTCAGTCCCACACACTGCAGGTCAATGACATCTTCCACAAGCAACAGTGGCTCAACTGCCTCCGCACTGCCATGTCGACCCAGAAAGATTCGTCACTCCCTGAAAGTGAATCCTTGACCACCCCTGCCAGTACCGACGTTTGCACCAAACGACGCTCGTCTTCCGTCTCTGCTATCATCCATATGGAAGAGACGGATGAGAACTGTCCACGGGCCGCAGCCTCCGCCCCTTCGTCCCCCAGCTCCGAGGAGCCCCCCAGCCCCACACCCTCCGCAACCTCCACCCTCTCCTCGtcctcttcatcatcttcaatTTCCGCCCCCTCCCTGCCCCGCAAATCCAAAAAGGACAAGCGTTCAATCTGCTCGTTGGGCAAGAGAAAGGAGACCATGGTGTAGAGACTAAGCTATCCCAGGGTACACATGGAATGACACTGTGTGGAGGActtgtatttatgtgtgtgtatggactGTGTGTTTCTACAGCAGTGTTTTTGTTACTGTCCACAATGGCAGCTATTATTACCAAATCCCTCCCCCCCAAAACCCTCCCAGGTCCACGTGGGCCACACCAGTACCAGAAAGACAGTATTTGTGAGGCGACTGTGTGGATCTCAAGGGACTGAAGTTGAAGACATCCCgcacattttaaatcacagcGTTGATTTGTGTGAAAGCGCAAGATCACACATCTAGTCTTGTTTACTGTTAGTTTggtcatatttttgttttattttattaatatagattttttttgtaattaaagttttacttttttaaaacttcaaTAAGATATTTACTGtagctcttttttgtttttattaaaagcactGTGTTTAGCTTTTAGAAGGGAAGAATACccactgaggaaaaaaaaaaaaaagataaaatatccTAAGCAATGAATACTTTGTAAAAGTCTGATTCATAGCTCTACTGGAAGGCAAGTCTTACAAGTACATTCCCATTAAATATTAGGTTTTGTCAGctccattttatatttaaatcagaaaataacTTATCAAGACAAGAAAATCGTAGAAATGTGATTTCAAACtgtccaaaatgtaaaatttgccATTTTGTTAATGCAAAAATCAAACCTGAGCCAAAAGTTTTACCAAAATGATGGATGAATATTTCAATGTAGCATCTTGCATGGAGCTTTACTTGTTGAGTCCTGCCTGTATTATCATGAGGGCCCAGTGCATGTACATGCTTGTCAAAGCAGAAAGTTGTTGTTGTAGATACGGACTGTCAATTAGAAGAAAAGGTGAATGTTGAATGAGGGCTTGAGAAATGTTGATGTGAGATTTAGAAGGAAATTTTGGAAAAGAGTTGGATACGACTAGATGGACTTGATGATTGACGCTACTTGATATTAGCAACCGTTCATGGACATTGGTttgctgttatttatattttcgtAGTGTCTTCATGAAGGAGGAAGGTTTGATACACTGGTTTAAAAGCCAGGATGTTTTGAGAAGGAACATGAAAGTATGTTTAGGAGAATGAACTGTTTAAAGAAGGTTAATGTATGTTATGACCACTTCAAAATGTCTGTAAAGGTTTGTAAATGAGAAAGGATGTACATTATTGGAAGGACTGTGGTGGcctgtatgtacagtatgtggtgTAAAAATCAACtattaaaagaacaataaagGTCTGTGTAAGATTTGCATCTGA

Function

symbol description
net1 Enables transcription coactivator activity. Acts upstream of or within dorsal/ventral axis specification; mesendoderm development; and regulation of nodal signaling pathway. Located in nucleus. Is expressed in axial mesoderm; margin; and shield. Orthologous to human NET1 (neuroepithelial cell transforming 1).

NR:

description
PREDICTED: neuroepithelial cell-transforming gene 1 protein isoform X1

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237090.1 True 3217 mRNA 0.46 11 5454172 5476182
XM_043237091.1 False 3166 mRNA 0.45 9 5454172 5461221

Neighbor

gene id symbol gene type direction distance location
prmt8b prmt8b,LOC107757234,LOC107690649,LOC107694311,LOC108436013 coding downstream 219116 5224238 ~ 5235056 (-)
LOC122342835 LOC107571041,LOC107571048,LOC107658713,LOC107739149,LOC107704613,LOC107658717,LOC107733017,LOC107745022 coding downstream 238010 5207074 ~ 5216162 (-)
LOC122342834 LOC107690655,LOC107758320,LOC107745022,LOC107758319 coding downstream 248851 5201608 ~ 5205321 (-)
LOC122343482 LOC107757207,LOC107690654,LOC107758319,LOC107690655,LOC107574392,LOC107575819,LOC107573508,LOC107698248,LOC107573509 coding downstream 252488 5197046 ~ 5201684 (-)
LOC122343478 LOC107715531,LOC107560711,LOC107656209,LOC107571041,LOC107656205,LOC107656210,LOC107571048,LOC107574393,LOC564807 coding downstream 264907 5183467 ~ 5189265 (-)
podxl podxl coding upstream 64107 5540289 ~ 5549648 (-)
LOC122342741 cyb5r3,LOC107590616,LOC107694301,LOC107757248,LOC107655553,LOC103021355,LOC105020308 coding upstream 99475 5575657 ~ 5578580 (-)
btbd11a btbd11a,LOC107757250,LOC107694300,LOC107725623,LOC107655613,LOC107560708,LOC108279962,LOC108426402 coding upstream 104320 5580502 ~ 5711019 (-)
si:dkey-222f8.3 si:dkey-222f8.3,LOC107694297,LOC107757251,LOC107725584,LOC107560723,LOC107655610 coding upstream 244234 5720416 ~ 5724961 (-)
braf braf,LOC107725591 coding upstream 444463 5920645 ~ 5937372 (-)
G26285 NA non-coding downstream 44133 5408627 ~ 5410039 (-)
G26281 NA non-coding downstream 64987 5386766 ~ 5389185 (-)
G26271 NA non-coding downstream 107117 5346785 ~ 5347055 (-)
G26270 LOC107754060,LOC107562295,LOC107694310,LOC107560735,LOC107757236 non-coding downstream 109302 5342498 ~ 5344870 (-)
G26237 NA non-coding downstream 212392 5240331 ~ 5241780 (-)
G26295 NA non-coding upstream 6460 5482642 ~ 5482847 (-)
LOC122343358 NA non-coding upstream 10881 5487063 ~ 5519852 (-)
G26316 NA non-coding upstream 31314 5507496 ~ 5507729 (-)
G26317 NA non-coding upstream 32689 5508871 ~ 5509101 (-)
G26319 NA non-coding upstream 33122 5509304 ~ 5509767 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other downstream 359532 5085090 ~ 5094640 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other downstream 696345 4731224 ~ 4757827 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other downstream 1186677 4264926 ~ 4267495 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other downstream 1292344 4133977 ~ 4161828 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 1835805 3602356 ~ 3618367 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 242830 5719012 ~ 5720250 (-)
G26408 NA other upstream 253836 5730018 ~ 5736946 (-)
G26414 LOC107560737,LOC107690649,LOC107757234,LOC107589816,LOC107694311 other upstream 374222 5850404 ~ 5853366 (-)
G26462 NA other upstream 430573 5906755 ~ 5913538 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other upstream 461873 5938055 ~ 5940015 (-)

Expression


Co-expression Network