pnpla8 (pnpla8,LOC107725648,LOC107587144,LOC107757281,LOC107581761,LOC107694266)


Basic Information

Item Value
gene id pnpla8
gene name pnpla8,LOC107725648,LOC107587144,LOC107757281,LOC107581761,LOC107694266
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6792052 ~ 6801957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237093.1
ggcgctctgattggctgcgcgCACATCACGTCATCTTAACTGTTTCTGAACGCTTCCTGTCAAACTGTTTATTTGGGATCCGCACACCTCTCCGTATTCTAGATATTTCTAGCGAAATGACAGCGAGTAATAAGGAATCAGCGGGTCGcctttaaaatgagaaaatctcCTACCTCGTGTGTTATCATGGAGTCCTTGCGTAGTGGATGTGAGATGCCTAAAGCTCTGACTGATCTCTGCAGGGCTCAGCAGCTCTGATGccaatccacacacacacacacatatacgcacACGTCTGTTTCCTCAAGGAATATCCCAGAATTCCCTCGAGTAACCTCGCCGCATGTCGCGCATCAGGAGCACACTGGACACCGTTACCAAAGCCGTGAGCGGAACGGTGAACACCGACCTCCTCGCCAAGATCACACGCTTCAAACCCCAAGGCAAAACCGTAGAGGTTAAAGTGGAATGTCCCGAGGCAGAGGCCGGGGCTGTCGTGACCATGGCGGCACCCGAGTCGCCCAGGGAGAAAGAGGTGAAAAAAGATATTGAACCTCATAAAGAAGCCCCAAAGTCTGTCAGCAGTTTGCAAACCCTGCAACGTTTTCAGCCCACGGCGTTCACGACCAACATGGATGAAACGTACAATCACCTGGCTGAACATGTCAATAACTACTTCGGAAGCGACtcacaaaatgacaaaaggTCACGTGACACGGCGTCCTCGACACCTCCGATGCCGCCTAGCAAGGATCACATCCTAATGGCGGTGCCCGCGTCCCATAGATCCACACCAGACACCCCCCCTGCTCTTGACAAGGACGGCTCTGTCCCAAGTCCACAAGCCCCTTCTGCTCCAGCTCCGGATGAGGGTGTTACAACCATCCCCATATCGCCGAGAAAAGGCATCAGTCACTATCTGTCCTACCCCAGGCCCAGCGTCCAGGCTTTCGTAGGAAACTACATCGCTCCCCTCGTCCCAAAGTTCAGAGCGGATTCAAAGAGTGGCACAGCGGAGAAGGACAAAACCTCTGAACTTGCGCCGTCCCAGGATGGAAAGAGTGCAGAAAGCAAGGAGAAAAAAGAAGCAGAAGAGAAAGCGCAGAGACTTCTGTCTCAGAGGGAGAAGattATAGCACGTGTTAGTGTGGATAACCGAACCAGAGCACTGGTCAAGAGTCTTCAGCGGGTCACTGATGTGAAGATCACCATCAGCAGGGTGGAGGAACTGAGCTTTCATCTGCTGGAGTTTCCTGAGACCAGAGGGGTGGCCGTCACTGAGAAGGTCATCCCGTGTCTGCTGCGTTTGAGGCAGGCAAGAGACGTCAATCTGCAGGCTGCCGTGAGACAGGCTCTGGCCCTGGTGGGCTACACTGACCCGGTCAAAGGCAGAGGGATACGTGTTCTCTCCATCGACGGAGGAGGGACCAGGGGTCTGGTTGCATTACAGGCTTTGCACAGGCTGGAGAGTTTGACCGGGAAGCCCATCTACCAGCTCTTTGACTACATATGTGGAGTTAGTACAGGGGCTATCCTGGCCTTTATGCTGGGTGTGTTCCAGATCCCTCTGGATGAGTGTGAGGAACTCTATCGGAAGTTGGGAACGGATGTCTTTAAACAGAACTTGATTGTGGGCACAGTGAAAATGGGCTGGAGTCATGCGTACTATGACAGCCAGATCTGGGAAGAGATTCTCAAAGAAAGATTGGGGCCTGGACTAATGATTGAAACTTCCAAGAACCCTAAATGCCCTAAGGTGTCAGCGGTGAGCACCATAGTGAACAGAGGCCTGCCGCTGAAGGCGTATGTATTCAGGAATTATAACTTCCTGCCAGGGGTTCGTTCACACTACTTGGGCGACTGCCAGCATAAAATGTGGCAGGCCATTCGAGCATCCTCCGCTGCTCCAGGATACTTCCAGGAATTTGTTCTAGGGAATGACCTCCACCAGGACGGTGGTCTCTTGATCAACAACCCCACCGCTCTGGCCATCCATGAGAGCAAGTGTTTGTGGCCCAACACACCTGTGCAGTGTGTGGTGTCTCTGGGAACAGGCCGATACGAAACCATAGGCAAGACCAGCTCGAGCACTTATACCAGCCTGAAGACCAAACTCACCAATGTCATCAGCAGCGCCACTGACACCGAAGAGGTCCACACAATGCTGGATGCCCTGCTCCCCCCGAACACTTATTTTCGTTTTAACCCTTACATGAGTGAAGACATCTCATTGGACGAGAACCGACAGGAGAGGCTGGACTTCCTGCAAGCTGAGGGTCGGCGCTACCTGGAGCGTAACGAGAATAAGTTAAAGAAAGTGGCCGCTGTTCTCGCTCAAGAAAAGAGCATCGTCCAGAAGCTGGCCGAATGGGCCCAACTTAAAGCCGACATGTACGATGGCGTTCCTTTTCGCTCCAAACTCTGAAACCCGCACTCTAAAACAAACTAGCACAACCACTGACCTTCTCCATTGTCTGGTTATCATATGACAAGGTGGAAATGCGTGTTACATATGTTGCCATATGACAGTACAAAACAGGGAATCAAGTCTGTTGCCTCACATTGATGAGCACATAAGAAGATTGAAAAAGTTTTAGTTggattttacgttttttttgttggtaTTGTAAGAACATCTTGTTTGAAACGAAGATGAAGCATGTTAGTGGCAGCACTGACTAGCTAGCACTTATATTTGCTGCTTTTCATTTGGGATGTACTAATGTTATTTTGATCCATTCGTTTGCAATAGGATAAGGTTGCTGTTGTGTGGTATCTCTCCTTGGGAAAACCTTTAGTAATAGTCGACTGAATTGACAGTACTGTAGTGAGCACAGGGAAAGCTGCTGAACTCACAgactaaagtgtgtgtgtgtgtgtataattttcaaccaaacttttatttaaattcaaattatcAACCCTCTGCAATGGGATGCGACGGCACTGATGTTTTAAAGACTTTGCACACAATGTTTCGAAAACATTAAATTGTGTTATTGCTGAAGACGGTTTGCATTAATTGTGAAAATACTAATGAAACAATTGTTGATTTTGCGTATTATGTTCGAATGCCTCggtatgcatttttatttgcttctgTGTGCACTTGGctggaaaatattttacataatttattggTACCGTTCAGACTGAgtgtataatattgtaaaatatcaaTCCTTGAATGCAGTGAGTAAAAATACAACAGTGTTGTAGATATGGTTTTAACAGCTTGATTCAAAAATGGCATTTTCCTAACACCTTAAAATGTATTCCCTAATGATTATGAagagaaataaatgattttaaacca

Function

symbol description
pnpla8 Predicted to enable calcium-independent phospholipase A2 activity. Predicted to be involved in arachidonic acid metabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in membrane. Orthologous to human PNPLA8 (patatin like phospholipase domain containing 8).

NR:

description
PREDICTED: calcium-independent phospholipase A2-gamma

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237093.1 True 3316 mRNA 0.48 10 6792052 6801957

Neighbor

gene id symbol gene type direction distance location
ccdc87 LOC107725647,LOC107587140,LOC107655557,LOC107694239,LOC107595458,LOC107734966 coding upstream 1574 6783948 ~ 6790478 (+)
tnpo3 tnpo3,LOC107757279 coding upstream 16241 6762781 ~ 6775811 (+)
calua calua,LOC107587143,LOC107725564,LOC107655589,LOC107578970 coding upstream 37021 6750516 ~ 6755031 (+)
dyrk2 dyrk2,LOC107655591,LOC107587139,LOC107725670,LOC107757277,LOC107694272,LOC107573871 coding upstream 103117 6671686 ~ 6688935 (+)
si:dkey-39a18.1 LOC107725505,LOC107587172,LOC107694240,LOC107757230,LOC107595032 coding upstream 129698 6656669 ~ 6662354 (+)
nrcama nrcama,LOC107655582,LOC107725579,LOC107757282,LOC107587145,LOC107580043 coding downstream 3305 6805262 ~ 6852998 (+)
cntn1b cntn1,cntn1b,LOC107757284,LOC107581848,LOC107694230 coding downstream 51812 6853769 ~ 6864948 (+)
pdzrn4 pdzrn4,LOC107587183,LOC107725536,LOC107581937,LOC107694264,LOC107729830 coding downstream 88992 6890949 ~ 6918247 (+)
pphln1 LOC107725587,LOC107655578,LOC107587147,LOC107582222,LOC107729837 coding downstream 152840 6954797 ~ 6970418 (+)
prl2 prl2,LOC107655571,LOC107587154,LOC107725674,LOC107582933,LOC107729861 coding downstream 363600 7165557 ~ 7169131 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding upstream 387653 6399167 ~ 6404399 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding upstream 493972 6216841 ~ 6298080 (+)
LOC122342718 NA non-coding upstream 869136 5917504 ~ 5922916 (+)
LOC122342717 NA non-coding upstream 875805 5914217 ~ 5916247 (+)
G26422 NA non-coding upstream 878538 5909380 ~ 5913514 (+)
LOC122342579 NA non-coding downstream 183286 6985243 ~ 7013661 (+)
LOC122343425 NA non-coding downstream 255467 7057424 ~ 7061042 (+)
G26669 pus7l,LOC107591455 non-coding downstream 281343 7083300 ~ 7088359 (+)
LOC122342925 NA non-coding downstream 788604 7590561 ~ 7636680 (+)
LOC122342735 NA non-coding downstream 1313931 8115888 ~ 8123874 (+)
vhll NA other upstream 401125 6388543 ~ 6390927 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 893225 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 929739 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 1394166 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 1847172 4929471 ~ 4944880 (+)
G26692 NA other downstream 385983 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 611979 7413936 ~ 7463373 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 730955 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 1239475 8041432 ~ 8100749 (+)
G26993 NA other downstream 1335781 8137738 ~ 8138439 (+)

Expression


Co-expression Network