wif1 (wif1,LOC107757271,LOC107725640,LOC107594874,LOC107587135)


Basic Information

Item Value
gene id wif1
gene name wif1,LOC107757271,LOC107725640,LOC107594874,LOC107587135
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6372058 ~ 6383263 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237103.1
CAGAAAGAACAAGCTGAATTAAACGGCTTTAATTGGCGCCTTGTATTAAACCACGCCACCTTGTGGCGACATCTGTGAAGTGCAGCTCCTGCCGCGTACAAGTAGCTCGCGGAGCGGTCCGCTCGAATCATTCTGTCAATTGAAGACTCACTCGAGACACATTTAGCGCACGGGATTGGAGCGAGAGCAGAGAGCCAGCAAGCCGGCCAATTGACTTCAGATAAACCTAGCCATGGCTTTCAGGACGCCTGCCGTTCGACTGCACCTTAAAACGTGCTTTCTTCTGCTTTTAGGGGGTCTGGTGGAAGCTGCCCAAGAGCAAGGGAGCATGTACATGTGGATTGATGCCAATCAAGCGAGAATATTAATTGGTTTTGAAGAGGATATTTTAATAGTCTCGGAGGGCAAAATGGCCCCATTCACACACGACTTCAGGAAAGCGCAGCAGCGGATGCCCGCGATACCTGTCAATATCCACCACGTGAACTTCACCTGGCAAGCCACCGATCAGGCAGAGTACTTTTATGAGTTTCAGACTCTGCGCTCATTGGATAAAGAAATTATGGATGACCCTACTGTCAACGTTCCTCTCTTAGGATCAGTGCCACACAAAGCCTCCGTGGTCCAGGTGGGCTTCCCGTGCAGAGGTGACCAGGATGGTGTGGCAGCATTTGAGGTGACCATCCTGGTGATGGATGCCGGAGGAAACATCATCCTGAGGACACCGCACAACGCCATCTTCTTCAAAACATGTCAGAGagCAAAGTGCCCTGGTGGTTGCCGCAATGGAGGCTACTGCAACGAAAGGCAGGTCTGCGAGTGCCAGGATGGCTTTTACGGCATTCACTGCGAGAAAGcccTCTGTTCCCCGAGATGTCTGAACGGCGGCCTGTGCATGAGCCcaggtgtgtgtatatgtccTCCAGGCTACTTTGGATCCAGCTGTGAGAGAGCTAACTGCAGCACCACCTGTTTGAACGGAGGGACGTGTTTCCATCCCGGCAAATGCATCTGTGCCGTGGGCTTCGAAGGGAGCCGCTGTGAGCTCAGTAAATGTCGACAGCCGTGCAGAAATGGAGGCAAATGCACAGGGAGGAACAAATGCAAGTGCAGCAAAGGCTACCACGGCGATCTGTGCTCCAAAGCTGTCTGCGAGCCCAGCTGTGGAGCACACGGGACCTGTGTGGAGCCCAACAGGTGCCAGTGCAGGGACGGCTGGCACGGACGTCACTGCAATAAGAGATTTCGTGGAGGAGTCTCCAACAGCCAGCGGGTCTCTGGTTCCAAGCACAAGTCACAGCCCGCGGCAACGGAGGAAGTGCCTGAATCCAGTCAGCCCTCCGAAACCAACTATGTGGTTTAAGCCTCCAAATTTTGGGCCAATGGCCCCTCCGTTTCATCGCCTTCTccagaacaaagcttttatccTCCTCTTCCGATCCTCATCGGGACACTCCCAAGCTGGACTGCTGCTTTCTCAGAGCGAGACTTGTTTTTGTAGTACAGTCACAGTGTCTTATTTTACCACTCTAGCGCCTttgatatcaaatctcccacaGTCACCCTTCATCGAGCTTCTGTCCCGCGTCAACCGAGAGGGGAGTGAGTCACAGGCTTGTGGTGAGCGTCTGTGATGTTTGCGCGGTTCAGTTTCAGATGTGGAGCTGAATCACTGGGAGAAGTGTACGTTACTATCCGAGAGCTTCCGGGTGCGGAATCCGGCTTTTCTTAGGAATGTAATTGCTGTATTTGGCTTGTGCTCACGGTTCGTCTGATTTAGTAAACTTATTGTCGTCATTATTGTCACTAACCTTCTTTTTCATGCAAATCATCCTTGTGTAGTAGCTTCTCCAACAAGTACTTGTATATGTATCCTATTCATGctatgtaaaattaatattgtgtgtgtgtgtgtgtgtgtgtatgtctatgtctctctctctctctctatatatatttatatagagagagagagagagagatagatagatatgggTAGACAGTCTTTAAGTTTATGCTTAAAGTTTTCATACTTATGTATAACAATGCACATAGGCTGCTTGTGATGTTATAAAGCCAAAAATTCCTAATTTTTCATGTGactttattacagaaataaaatgtg

Function

symbol description
wif1 Predicted to enable signaling receptor binding activity. Acts upstream of or within negative regulation of canonical Wnt signaling pathway and swim bladder development. Predicted to be active in cell surface and extracellular region. Is expressed in several structures, including anterior swim bladder bud; nervous system; paraxial mesoderm; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; renal cell carcinoma; and urinary bladder cancer. Orthologous to human WIF1 (WNT inhibitory factor 1).

NR:

description
PREDICTED: wnt inhibitory factor 1

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K01691 WIF1; WNT inhibitory factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237103.1 True 2125 mRNA 0.49 10 6372058 6383263

Neighbor

gene id symbol gene type direction distance location
lmo3 lmo3,LOC107550907,LOC107757261 coding upstream 137120 6193509 ~ 6234938 (+)
tmem121b cecr6,LOC107560714,LOC107725577,LOC107655606,LOC107694250,LOC107757258,LOC107590478 coding upstream 312514 6055158 ~ 6059544 (+)
mkrn1 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576,LOC107655605 coding upstream 317861 6044883 ~ 6054197 (+)
tmem178b tmem178b,LOC107725619,LOC107694293 coding upstream 356221 5941826 ~ 6015837 (+)
LOC122342428 si:dkey-47k20.2,LOC107676311,LOC107569153,LOC107741377,LOC107697634,LOC107741381,LOC107557170,LOC107569155,LOC107569150,LOC107748086 coding upstream 490781 5877534 ~ 5881277 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding downstream 258600 6641863 ~ 6654653 (+)
si:dkey-39a18.1 LOC107725505,LOC107587172,LOC107694240,LOC107757230,LOC107595032 coding downstream 273406 6656669 ~ 6662354 (+)
dyrk2 dyrk2,LOC107655591,LOC107587139,LOC107725670,LOC107757277,LOC107694272,LOC107573871 coding downstream 288423 6671686 ~ 6688935 (+)
calua calua,LOC107587143,LOC107725564,LOC107655589,LOC107578970 coding downstream 367253 6750516 ~ 6755031 (+)
tnpo3 tnpo3,LOC107757279 coding downstream 379518 6762781 ~ 6775811 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding upstream 73978 6216841 ~ 6298080 (+)
LOC122342718 NA non-coding upstream 449142 5917504 ~ 5922916 (+)
LOC122342717 NA non-coding upstream 455811 5914217 ~ 5916247 (+)
G26422 NA non-coding upstream 458544 5909380 ~ 5913514 (+)
LOC122342716 NA non-coding upstream 458897 5904654 ~ 5913161 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding downstream 15904 6399167 ~ 6404399 (+)
LOC122342579 NA non-coding downstream 601980 6985243 ~ 7013661 (+)
LOC122343425 NA non-coding downstream 674161 7057424 ~ 7061042 (+)
G26669 pus7l,LOC107591455 non-coding downstream 700037 7083300 ~ 7088359 (+)
LOC122342925 NA non-coding downstream 1207298 7590561 ~ 7636680 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 473231 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 509745 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 974172 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 1427178 4929471 ~ 4944880 (+)
G25958 NA other upstream 1743159 4550163 ~ 4628899 (+)
vhll NA other downstream 5280 6388543 ~ 6390927 (+)
G26692 NA other downstream 804677 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 1030673 7413936 ~ 7463373 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 1149649 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 1658169 8041432 ~ 8100749 (+)

Expression


Co-expression Network