tmbim4 (tmbim4,LOC107757272,LOC107567270,LOC107587136,LOC107725641,LOC107694279,LOC107655596)


Basic Information

Item Value
gene id tmbim4
gene name tmbim4,LOC107757272,LOC107567270,LOC107587136,LOC107725641,LOC107694279,LOC107655596
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6389698 ~ 6393477 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237104.1
aaatgaaaaaaagaaaccaccACAGAAAAAACGGAAGAGAGCGTCGTATTATCGCTTGTATTTATGAGTAAGTGATACGCGTTTAATTCGATCAAACATGGATCAGGAAAAGTATCCGAGATCATCCATTGAGGATGATTTTAATTATGGCACGAACGTGGCGACGGCGAGCGTCCACATCCGGATGGacTTCCTCCGCAAGGTCTACACCATCCTGTCACTGCAGATCATCATCACCACTGCTGTATCTGCCGTTTTCATGCTCTGTAACCCCATTAAAAACTTTGTGCACGAAAGTCCCTCGCTGGTGTTGATATCTGCTATCGGGTCTCTTATCCTGCTCCTTGCCCTGGCCGTGTACCGTCACCAGCACCCCATCAATCTTTACCTGCTGTTTGGATTTaCTCTGTTGGAATCTCTGTCTGTGGCCACTGCGGtgacattttaTGAGTACACCATAGTGCTCCAGGCCTTTGTGCTCACGTCTGCCGTGTTCCTGGGTCTCACTGCCTACACTTTCCAGTCTAAAAGAGACTTCAGCAAGCTCGGAGCCAGTCTGTTTGCTGGCCTGTGGATCTTGATCATTGCGAGCTTTATGAGGTTTTTCTTCTACAATGACACAATGGAGTTGGTGTTCGCTGGGGCTGGAGCTCTGCTCTTCTGTGGGTTCATTATTTTCGACACTCACTTGCTGATGCATAAGCTGTCCCCAGAGGAGCACGTCCTGGCATCCATCAATCTGTACCTGGACATAGTCAACCTGTTCATCTATATCCTGCGCATCCTCGACTCCATGAAGAAACACTGAATGTCTGATGCCCTTTCTCGCTTTCAGAGGTGAATTCTGGGTGCAATGATGggagtgtttaaaaaaaaaaaagttattaatttaatagaTTCCACGTGCAATAATGTTGTAACTCATCAGATGAAATCGGATTAATTCATATCCGAAATAAGCATTGCAAGAAATGTTGTGGAccacataatatttatttgaataaaagtcTTTGAAATGCACTGAGTAGAAGACATTAATGTCTTTGCAGTGTTCAGAATTAATGGAATATGTGTGCTATTCTTCTCCTTGGATTTTGCTTAATTTCTACCATTAGTTGAAACGAAGCTCCTCAAGACACTCCTATTGTATTGAAGTTTTCTCAACCAGCTGCGTACCTTCAGCTTGCGAAGCGgtatttgaaatttaaattaaatgtgaatgttACAAACCTGATTGTACAAATTTAACTTGATCTGCCCTGTTGCTGATtagatttctgtttttagtCGCCTGTAGTGTGACCTGTAGTCTgtggtgatttttatttttattttttcatgtttaattggGTGTTTTTGTGAATCGGTGTTTATTGATTGGAACAAACTGTACATGAAGACGTTTGTGTATGTGGGGTTAAATTGATTCCTGACGATAAATTACAACTAGTCGGCCTCATGATAATGAAGTCATAAtgcaaagattttaaaaagtgtagtttttatttgcattcacaAAACAACGTTGAAGCAGCATGCGGTTTCAAACGCATCTAAATATTTTCCATTATGTCAGTCTGCTCATTTTAatagacaaaaaataataattataataaattgagAACATAATATTCAGGGACCTCTACATGCCTGTATACAAAGTGCAATAttcatcataataaaatataaatatacattgtgGTCACTGATGTTTATTTGAGAACAAAATGGTCACACGTAAAAACTAAGGTGTCGTGTAATTTAATGTTCTttggtgtaaaaataaataaataaaattctattaaatca

Function

symbol description
tmbim4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMBIM4 (transmembrane BAX inhibitor motif containing 4).

NR:

description
PREDICTED: protein lifeguard 4

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237104.1 True 1809 mRNA 0.39 7 6389698 6393477

Neighbor

gene id symbol gene type direction distance location
lemd3 lemd3,LOC107655547,LOC107694277,LOC107587170 coding downstream 19125 6362449 ~ 6370573 (-)
hmga2 NA coding downstream 53434 6306691 ~ 6336264 (-)
b2m LOC107655597,LOC107725654,LOC107757228,LOC107560265 coding downstream 91750 6296218 ~ 6297948 (-)
irak3 irak3,LOC107655599,LOC107725673,LOC107694243,LOC107590877,LOC107579392,LOC107587169 coding downstream 94691 6290100 ~ 6295007 (-)
helb LOC107655598,LOC107587130,LOC107558247 coding downstream 100088 6281448 ~ 6289610 (-)
grip1 grip1,LOC107655593,LOC107694275,LOC107757274 coding upstream 8290 6401767 ~ 6627881 (-)
si:ch211-266a5.12 LOC107725560,LOC107655565,LOC107587181 coding upstream 319810 6713287 ~ 6715728 (-)
ifng1 NA coding upstream 325741 6719218 ~ 6721149 (-)
ifng1r NA coding upstream 329570 6723047 ~ 6724403 (-)
LOC122343434 NA coding upstream 333108 6726585 ~ 6727833 (-)
LOC122342911 NA non-coding downstream 497 6377116 ~ 6389201 (-)
G26556 NA non-coding downstream 122284 6266832 ~ 6267414 (-)
G26541 NA non-coding downstream 154760 6186089 ~ 6234938 (-)
G26490 NA non-coding downstream 305488 6083590 ~ 6084210 (-)
G26487 NA non-coding downstream 312366 6077087 ~ 6077332 (-)
G26787 LOC107725579,LOC107655582 non-coding upstream 448497 6841974 ~ 6843849 (-)
G26790 LOC107725579,LOC107587145 non-coding upstream 452082 6845559 ~ 6908495 (-)
G26795 cntn1b,cntn1,LOC107581848,LOC107757284,LOC107694230,LOC107725506 non-coding upstream 466597 6860074 ~ 6862247 (-)
G26796 NA non-coding upstream 469246 6862723 ~ 6863382 (-)
G26799 NA non-coding upstream 490424 6883901 ~ 6956375 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 28214 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 137050 6085892 ~ 6252648 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other downstream 449683 5938055 ~ 5940015 (-)
G26462 NA other downstream 476160 5906755 ~ 5913538 (-)
G26414 LOC107560737,LOC107690649,LOC107757234,LOC107589816,LOC107694311 other downstream 536332 5850404 ~ 5853366 (-)
il22 NA other upstream 344164 6737641 ~ 6740741 (-)
si:dkey-261e22.4 NA other upstream 820857 7214334 ~ 7220911 (-)
G26951 NA other upstream 1161638 7555115 ~ 7558453 (-)
LOC122343432 NA other upstream 1854434 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 2067029 8460506 ~ 8468028 (-)

Expression


Co-expression Network