tcf19l (LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348)


Basic Information

Item Value
gene id tcf19l
gene name LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27436433 ~ 27442200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237111.1
ataaaggagaaGATTATATGGTTAGAAACTGTTTGCGTTGTCATTCTCCATTGACGGTCTCCTTGACAACACGGACGGAAGTGGCGTTGATTTTCGCGCAAGGAAACTCGTCCCGCTCCTGGCGCGCCAAATTTCAAAGCACTTCCTGGGGAGAGGAGGCGATAAGATTTACCACGGGGCGCAAATAAAAGGCTCGCGTAGCGTTTTACAAAACGTATACCTTCGTGTTCGGGAATGAAGATCAGCTATTGATCATCTCGCCGGACCGCTACCAGTCCACTTCTGATGTTTAATTGACCCGTGCTGCAGCGTTTTAGTTTgcccttttaaatatttttttaatattttagcatggcgtattttatttaatagggAAAAGAAGCTTTTCTAAGAGTCCTGTTTGAAAGCGTTCGATGGAGGACGTCTGTGTGAGTGCTCTGTGTTGAGGTTATTTGTGGGCCGTCAGCATGTCGTCAGCGGTCCAGCCGTGCTTTCAGTTGTTGAGGATTGGAGTGTGTGACGCAGACAACGGTGACTCTCAGGGAAACGCGTCGTCAGACTCCGTCCGTGACCTGTACACTTTCCGGCCCGCTCTGGCCCGGTGTGTGTTTCGTCTGGGACGTGCCACGGAGCTGTGTGACGTCACTCTGGAGTCCATGGTCGTGTCCCGTATCCATGCGGAGCTCCACGTGGAGAGAGAACCTGACGCCTCTGGAGAAGAGAGCTGGAAAGTGCAAGTGAAGGATCGCAGCAGTTATGGCACATGGGTAAATGACATGCGCCTCCAACAAGGGGTCTTAAAGGAGATCTTTGACGGCGACACGCTCACCATCGGCGGCCAATCAGGACGGGCCAGTCCAGAGTTCTACTTCCTTTTCCAGAAAGTACGGGTCCGTCCGCTGGACTTTGACGCCATCACTGTGCCCAAAGCGGGCTCCTTCTCGTCCGACATAAAGAACCGGATCAGAACGAGCTCGGACCGTAAACCCGACCCGGCTCTGGACATCTCGAAGCTGTCCATCAACAGAGCCACGGTCATCCTCAACTCCATCGGCAGCCTGAGCAAGATGAACGGCAGCTGCTGGACCTTCAAGAAGAGCGAAAACACCTTCAGCACGCCGCCCTTCGCCGCTCTGGCCCCGCCCACCACTCCGCCTCCTTTCCAGGCCGTGGGAGAGATTTCATCCAAGTCTGTCCCGCCCTCCTCAAAGAGCCGGCGTAAGTCCGCTCACACGGTCCTGCTGGAGGACGACAGCTCGGACGACCCGGCGAGCCGCAGGGACCTGGAGGACGGCCGCAGGGGCCAAGCCAAGAAGAGACGGCGGCTCTACAAATCAGAGTCCGAGGTGTTTCAGCCCCCTCCGCCCAAACTGGACGTGATCAAACACTCCGCCGCCAGCGTCTTCAGCGTGCCGCCCACCCGGCATATCCTGACCGTATCGAGTCACGCCAAAGGCAACGGCATCGGCATGACGCCCCTGCGCCCGCAGAAGCCCTGCTTGTCTGGTCCCGGCAGGAGGCCGAGGGCCCACAGCTCTCCCGTATTCACCGGCCTCGGGGGGGGATGTGAGAGTTACGGCCTGACCTCGCCGGCAGCCAGGATGAGCAAGACCGACAAGAGCAGGGCCGTGATGTCTCGCTTCCAGGCCTCCACTGGGCGTCGACGTGGAAGGCCCAGAAAGCACCCTCTGCCTCAGCCTTCCCTGCCGTCtccctcttcatcctcctcctccagctcttcctcgtcgtcctcgtcctcctcctcgtcctcgtcGTCCtcagaagatgaagatgagtgCGTGCCTGCGTGTCAGGCCGTGGAGCCGTGCGCGGCGTCTCGCTGTCGTCTCCCGCAGCAGGACACGGTGCAGTGGATCCAGTGTGACGACTGCGACGCCTGGTATCACCTCGACTGCTTGCCGCACAACCACAACCGAGACTCGCTGCTCCTCGACCCCAGCGCCGACTTCCGCTGCGGCTGCCATCGCTCCAGACACCGCTGACGGCCAGCCGCTTTGAACTGGTCCGGATGCAGGGAGGGTGTTGGATTTGCACAAGAGCGTCCAAACACCGGATGCTTTCTGACTGCTTCCGGTATACAGATCTATTCAATATACTCCAATGAAAcctttaaaatgccaaaaaaaaaaaaaaaaaaatgaaataagctTGCATATGAAAATgggaatttatatttttaaaagaatgaattaTGGAGGAGGATTTGGCTGGGCTTTGGTATCTAAACATGCTTATTAGCTGGTATATAACATGTTATCATtgaatactgtatgtttgaGAATGAGCGATGaggatatatataatatgatgtCTCGTTCAAGCATTACTCTGgctttttatgtaatttcagAACTTTTAGTAACAATCAAATCACCTTTCTGTGGTCAGTGAACCCCTCGggctgtttcttcatcagaacacaTTCAGAGACTTTTCCTTGTCcttcagcagtgaatgggtgccgtcagaatgagagtccaaacagccgatGAGCCGCGCCGCTCCAATCAGTTAACATCCTGTGAAGGACAAAAGCTGTGTgtctgtaagaaacaaatctgtCATTGAGgcgttttaactttaaaccgcTGCTTCCGGGCAAAATATTAGTCCCGTGATCACACTTCATCTATCTTCTGTAGTCcgctcacatcaaaatccaccaacatgTTCATTCTGAACTGGCCTGCTTTTGCTCATAAATAGTGTTCGATCCCTGCATTCAGACGAGACGATTCAAAACAGGACTTGCATACTCCaagtgaaaacttttgaaaacgcattgattgatggactggagagGTGTGGCTTActtgggatgtttttatcagccgctTGGACTCTAaatccgacggcacccattcacttcagcttcgctttctccaaatccgttttaaaagaagaaacaaactcctttATAAAGGTGATGGCGTTTTCGTATCTTGAACTCTCCAGCTTGACCTTTGGTCCGCGCGCACGGTTGTTTCCTGTAATTAAGACGCTTCCTCGACTAACCCCCGTCTAGCGGTGTCCGTCTGTAAGAATAGAGTCTGTGGTATGAATGTTAAAAGATACTTTCACTGTCTTCACTTTAACTCAACGTTCTAGAAATGACAAATGACTTCTGTCACAATCTTTGTCTTGTTGGGAATCAAGGGCTGAATAAAGAgttctatatttaaatatga

Function

NR:

description
PREDICTED: transcription factor 19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237111.1 True 3209 mRNA 0.52 4 27436433 27442200

Neighbor

gene id symbol gene type direction distance location
LOC122342913 LOC107752534,LOC107665115,LOC107549827 coding upstream 405 27419543 ~ 27436028 (+)
trnav-uac_5 NA coding upstream 212447 27223914 ~ 27223986 (+)
LOC122342370 NA coding upstream 225831 27207736 ~ 27210602 (+)
trnav-aac_9 NA coding upstream 294809 27141552 ~ 27141624 (+)
trnav-cac_2 NA coding upstream 297307 27139054 ~ 27139126 (+)
pvrl2l pvrl2l,LOC107549846,LOC107752518,LOC107665153,LOC107753776,LOC107554349,LOC107666334 coding downstream 18281 27460481 ~ 27599258 (+)
atp1a3a atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181 coding downstream 180472 27622672 ~ 27649545 (+)
LOC122342440 LOC107753802,LOC107554351,LOC107666349,LOC100537384 coding downstream 222905 27665105 ~ 27711406 (+)
erf erf,LOC107753815,LOC107666335,LOC107554353,LOC107549829,LOC107665162,LOC107752521 coding downstream 282921 27725121 ~ 27751872 (+)
cica cica,LOC107554354,LOC107752539,LOC107753834,LOC107665116 coding downstream 314325 27756525 ~ 27778786 (+)
G31443 NA non-coding upstream 25838 27363588 ~ 27410595 (+)
G31438 NA non-coding upstream 203001 27233096 ~ 27233432 (+)
G31429 NA non-coding upstream 238167 27197887 ~ 27198266 (+)
G31428 LOC107574244,LOC107838241 non-coding upstream 351726 27084317 ~ 27084707 (+)
trnay-gua_43 NA non-coding upstream 435578 27000769 ~ 27000855 (+)
LOC122343300 NA non-coding downstream 165587 27607787 ~ 27619661 (+)
G31520 NA non-coding downstream 270046 27712246 ~ 27713190 (+)
G31540 NA non-coding downstream 355773 27797973 ~ 27798209 (+)
G31543 NA non-coding downstream 381206 27823406 ~ 27823705 (+)
G31549 NA non-coding downstream 470117 27912317 ~ 27951998 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other upstream 30345 27360843 ~ 27406088 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other upstream 65237 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other upstream 78270 27356812 ~ 27358163 (+)
G31384 NA other upstream 1622808 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1741052 25693802 ~ 25695381 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 764758 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 776533 28218733 ~ 28221417 (+)
G31636 NA other downstream 842827 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 855102 28297302 ~ 28317582 (+)
G31649 NA other downstream 908153 28350353 ~ 28353226 (+)

Expression


Co-expression Network