optn (optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275)


Basic Information

Item Value
gene id optn
gene name optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3006873 ~ 3012104 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237123.1
CTGCGTAAGGCTTACTGTAAACAGACCGATCCTTTTGGATCACAGATCTGCGCGTTCCGCGCGCGCCGCGCTGACGTCTGGATCAGGAAACGCAGCATTTCCCAAAACAAGTTGGTGCGCACAAGAAGTGAACGCTCGCTCAAGAGACTCCAGAAGCATGGCATCTGGTTCATCGATGATGAACGGGGACATCAATCACCCACGCGGCTCCGGCCCGGGGAATCTGGGCAGTTTAGAAGAGACCCTTCAGCAGATGAACACCCTGATCAAAGAGAACAGAGAACTGAAGGAGGCCCTGAAACAAACCAACTTGTCCATGAAGGAGCGATTTGAGGGTCTGTCGACATGGAAGGAGAAGCAAAAGGAGGAGAGGGACTTCCTTGAGCAACGATTAGAGGAGGCCAAAACCAGACTGAACGTTATGGATTTAGAGAACGAGGAGCTGAAGAAACGAGTGGTAGAGCTGGAAAAAAGTGGAGCTGAGTGTTTACATACCGAACTGGAGACGCTGAGGGGACAGATTGCTCGTCTTCAGGCCGAGAAGAATGATCTGGTAGCATTAAACTCTGAACTCCAGCTCAAAATGGGTCAAGGTTCACCTAGAGATTCCTTCATTGAGATTAGAATAGCTGAAGACGAGTTAAAAGTGACCAGAGATTTGCCCGACAAGTCAAAGGACGCTTGTGCTTTCAGCATGCTAAAGGCTGAGTCGGAGGAACAGACGGTGAGGCAGCTGCTTCGCTCCCTCAGAGCAGAGACGGATGAGAAGGAGAGACTGCAGCTAGCGCTCCAGGAGGCACGTGGGAGAATTGCCGAGTTGGAGAGCAGACTGGAACACGCCGACACCAGTGTACAGACGTCTCTCCCCTGTACAACTGAAATTAATGCAAGTGCTGAGGTGAAGAATCTGGAGGATCAGTTGCTGAAGCTCTGTAATGAATTGAAACAGGCTCAGGTCAAACTGGATGAAGCTGAGAACATGAAAAGAAACCTGCAGGATAGGTGTAAGGATCTGGAGCAGGATCTAGGTACTGTGAAAACTCAGCTCGGAGACAAACAGAAGGTTCAGGCTGAAAATGACACTCTGAGGGTTCAGATGGAAAGCCTTCAGGCTGCTGTTAAACTGGAACAGAAGAAAACTCAGGATGAGAAGAACAACCTGAACCAGCTGAAAGATGCCTATACCAAGCTGTTTGAAGACTACAATGAGCTCCAAGAGGAAAATAAGAAGAGAGAGGGTTTTGTATCACGGGAAGACTACGGTGACCTCCAAACCAGGTTCGATACGGCTGAAAAAGCACTGGCTGACAAACAGAAGAAGATCGACGAGATGAAGATGGAAATCTTCCAGAAGGAAAAGGAACTAGAAACCATCTCTGTTTTCCAGGCTCAGGCAGAGATATATTCCTCCGATTTCTACGCAGAACGAGCGGCTCGGGAGAAGATTCATGAAGAGAAAGAGCGTTTGGCCACTCAGCTGGAGTATGTGAAGAAACAGAACACCCAGCTCCAGGAAGAGATGGAGTCACTTGGCAGACATTCCATGAGTGAGATGCAAAGGAGGCATGTGTCACGGGGGGCCAATCCACAAGGGCCAGCATCTCCACATCACCCGCAAGGAGGAGATTGGCAGCAGCAGAATATTCCAGACCACGCTTGTCCCAAATGTGGGGAAGTCCTACCTGACCTGGACTCCCTGCAGATCCACATCATGGATTGCATCATCTGAGCCTGTTGCCTTGTAACCATACCAGATCCCCCCTACATGTGAACTAGTGGTTTGATAGCTTTACCAAGCAGCCTGAAACATAATGCTTCAGTAACGCACCCTGCATCCTAtcaatactgtatattatcaGTGTGGATGGTTTCAGATTAATAGATGCTATTGGATGAGGGTGGGAACCGCGATTAAATGTGTGGCTTGGTTCTGGATTAACTATAAATACACCCTTTAACAGCAACTTTATTAAGCTGCTTTAAGACAATTTATAATGTCAactattaagaaaaaatatatttgtgtgttacAGGTGGGCAATCAGTGTGGCATACATTAACGATTAATCTGTTGTGGGTGAATTGTAATTGctagcaaaaacattttagtttaaaacgAATGTTTCTGAAAGAGTTCTATATTTGAAAGATCTGAAATCtcaattatattttcattatactTTCAATGCCCCACATTATACAGACATGGGTAaagagatgtttttcttttgtttgttggaTCTGTTAATTAAAGCACTTTATTCTGTTTAATAAGCAAGGGTAGCAAGTTAGATTTTGGGCTACTTACTCTAAATATATAACCGTGTCTGTTAACAACTGCCTAAATCTAATAAATACTTTTCTGAAGTTCA

Function

symbol description
optn Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Acts upstream of or within axonogenesis; defense response to bacterium; and vesicle localization. Predicted to be located in autophagosome; perinuclear region of cytoplasm; and recycling endosome. Predicted to be active in Golgi apparatus and nucleus. Is expressed in several structures, including eye; otic vesicle; periocular mesenchyme; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Paget's disease of bone; amyotrophic lateral sclerosis (multiple); and glaucoma (multiple). Orthologous to human OPTN (optineurin).

NR:

description
PREDICTED: optineurin

GO:

id name namespace
GO:0007409 axonogenesis biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19946 OPTN, FIP2; optineurin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237123.1 True 2372 mRNA 0.45 14 3006873 3012104

Neighbor

gene id symbol gene type direction distance location
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 12374 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 65276 2938072 ~ 2941597 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding upstream 79775 2923221 ~ 2927098 (+)
phyh phyh,LOC107743808 coding upstream 86630 2916161 ~ 2920243 (+)
LOC122342536 NA coding upstream 93394 2912178 ~ 2913479 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding downstream 299549 3311653 ~ 3381172 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 567524 3579628 ~ 3601006 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding downstream 648513 3660617 ~ 3675293 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 666141 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 748480 3760584 ~ 3769843 (+)
G25453 NA non-coding upstream 75014 2931108 ~ 2931859 (+)
LOC122343411 NA non-coding upstream 181084 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 219216 2726802 ~ 2787657 (+)
LOC122342395 NA non-coding upstream 287512 2686424 ~ 2719361 (+)
LOC122342427 NA non-coding upstream 327130 2666342 ~ 2679743 (+)
G25456 NA non-coding downstream 5463 3017567 ~ 3024764 (+)
G25502 LOC107573038 non-coding downstream 396897 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 408532 3420636 ~ 3429146 (+)
LOC122342808 NA non-coding downstream 427027 3439131 ~ 3439654 (+)
LOC122342809 NA non-coding downstream 428808 3440912 ~ 3441500 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1011337 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1218777 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1333914 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1675030 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1715649 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 87633 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 107411 3119515 ~ 3306758 (+)
G25514 NA other downstream 469525 3481629 ~ 3502094 (+)
G25551 NA other downstream 725398 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1217525 4229629 ~ 4231092 (+)

Expression


Co-expression Network