si:ch211-240l19.8 (LOC107658767,LOC107725963)


Basic Information

Item Value
gene id si:ch211-240l19.8
gene name LOC107658767,LOC107725963
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3012766 ~ 3013359 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237125.1
TGATTGCCAATGGAGTTTTGCATTGGCGGTTGCGTTATAAAGGGAGCACGAATCACAAAACATGCACACAACACCTAAATACAAGCAAGtcatgGCCGTGTTTGGTCATCTTGGGCTGGTGTCTCTGGTCGCGTTGATGCTGGTGTCTCAGCTTGACGTTACCAGTGCTGCCGTCCGGGTGTTTGGTTTACACGCCAGGGACCTCACCGGTGACCCTCTTGGAAACAAACCCGACCCGTACATCAAGGTCTGGTGTGGCTCTACTTTTGGGGGTCAGACAGAATACCACAAGGATACTGCAAATCCTTCGTGGTCTGCAGAGTTCAACTTCCCGTACTGTAAATGTGACGAAACCCTGAAGCTGGAGGTGTGGGACAAAGACATGACTTATGATGATCTGCTGGGCACGTGTACCAAACTGGTGCAATACGGGTCTTTCACCGTTACTTGTTATCTTAACAAAGGAACTGTGTTTTACAGGTTTGAGGCTAAATAAATCTGTTCCAAATTA

Function

NR:

description
PREDICTED: perforin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237125.1 True 511 mRNA 0.48 2 3012766 3013359

Neighbor

gene id symbol gene type direction distance location
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding downstream 74749 2935107 ~ 2938017 (-)
mcm10 mcm10,LOC107658860,LOC107726070,LOC107743741,LOC107656326 coding downstream 77790 2927805 ~ 2934976 (-)
cdk17 cdk17,LOC107658862,LOC107656329 coding downstream 108477 2863140 ~ 2904289 (-)
lta4h lta4h,LOC107658863,LOC107656327,LOC107744078 coding downstream 167761 2835848 ~ 2845005 (-)
tfec LOC107584009,LOC107725982,LOC107658865,LOC107710111,LOC107580185,LOC107656331 coding downstream 189619 2783461 ~ 2823147 (-)
LOC122343283 NA coding upstream 4273 3017632 ~ 3018211 (-)
LOC122343240 NA coding upstream 10889 3024248 ~ 3024825 (-)
wnk1b wnk1,LOC107725976,LOC107658853 coding upstream 13712 3027071 ~ 3094405 (-)
LOC122342759 fbxl14b,fbxl14,LOC107580311,LOC107656333,LOC108279751 coding upstream 341010 3354369 ~ 3356141 (-)
LOC122342755 LOC107676321,LOC107716109,LOC107709941,LOC107655767 coding upstream 387021 3400380 ~ 3402341 (-)
G25625 NA non-coding downstream 16308 2980159 ~ 2996458 (-)
LOC122343423 NA non-coding downstream 474760 2534205 ~ 2538006 (-)
LOC122343417 NA non-coding downstream 723647 2203585 ~ 2289119 (-)
G25362 NA non-coding downstream 728988 2283285 ~ 2283778 (-)
LOC122343454 NA non-coding downstream 830097 2167305 ~ 2182669 (-)
LOC122342459 NA non-coding upstream 103045 3116404 ~ 3117297 (-)
LOC122342458 NA non-coding upstream 104120 3117479 ~ 3119550 (-)
G25673 wnt5b,LOC107656325,LOC103026771,LOC107580320,LOC107744029,LOC107726030 non-coding upstream 367299 3380658 ~ 3676399 (-)
LOC122342758 NA non-coding upstream 389465 3402824 ~ 3403502 (-)
LOC122342757 NA non-coding upstream 403228 3416587 ~ 3417917 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 552 2999882 ~ 3012214 (-)
LOC122342907 NA other downstream 539698 2472284 ~ 2473068 (-)
dock4b dock4b,LOC107656358,LOC108425388 other downstream 637050 2299635 ~ 2375716 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other downstream 914965 2091351 ~ 2097801 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other downstream 924187 2042953 ~ 2088579 (-)
LOC122342805 NA other upstream 5733 3019092 ~ 3021512 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other upstream 521303 3534662 ~ 3577123 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other upstream 587641 3601000 ~ 3601991 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other upstream 588997 3602356 ~ 3618367 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 1120618 4133977 ~ 4161828 (-)

Expression


Co-expression Network