gys2 (gys2,LOC107659841,LOC107694689)


Basic Information

Item Value
gene id gys2
gene name gys2,LOC107659841,LOC107694689
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8490359 ~ 8501938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237148.1
gttttacagaaGTATGGACCAAAAGAGTAGTGCGCGCGCACGTGCCGTCCGGGTCAGAGGGGCTCGCGCGCTGCGGCTAAATCTTTCTCCTTCATATCTGTGGACTTCAGACGCAGGCCGTTTTTTTTAGACTTCACCAAAGGTTAGAGGAAGAGACAGAGCAACAGCTCACAGCGTGTCCAGGACCTCCGGGCGCTCCATGAACTTGAAGAGAAACTCTCTTTGTGACCGTTGAATGGTATTAGCTTCTTACCACAGTAACCGATTTGGCCCATTTCGCATTTGCAACAGCAGCTGAccgattaaaaaaacaaaacaaaactgagttTGTGAGATGCGACTATCCAGATCTTTGTCAGTAACGTCATTAAGTGGACTTCCGTTATGGGAAGAGGAAAGTCTACCTGTGCAAGACCTCTTGCTTTTCGAGGTCTCGTGGGAAGTTACTAATAAggTTGGGGGTATATACACTGTCATTCAGACTAAAGCGAAGATCACCGTGGACGAATGGGGAGAGAACTACATCATGATGGGACCCTACTACGAACACAACTTCAAGACCCAGGTGGAGAAATGTGAACCTCCAAATCAAGCCATCAAAGCTGCCATGGACTCCTTGATTAACAACGGATGCCAGGTGCACTTTGGCCGCTGGCTGATTGAGGGCAGTCCGTACGTCATCCTCTTTGACATCGGGGCTGCTGCCTGGAACCTGGACCGCTGGAAGGGGGATCTGTGGAGCGCGTGCAGCATCGGGCTGCCCTTTCACGACAGGGAGGCCAACGACTCGCTCATCTTCGGTTCGCTTGTGGCCTGGTTCTTCAAGGAGTTAACAGACCAGCTGCAGGACACTCTCAACGTAATTGCTCATTTCCACGAGTGGCAGGCCGGGACAGGACTTGTGCTGAGCCGCTCCCGAAAGATTCCCTTAGCAACCATTTTCACCACACACGCCACCCTCCTGGGCCGGTACTTGTGCGCCGGCAATGCAGACTTCTACAACAACCTGGACAAGtttaacATTGACCAAGAGGCAGGGGAGAGACAGATCTACCATCGGTATTGTTTGGAGAGAGCAGCCGTACACTGCGCACATGTATTCACCACCGTGTCCCAGATCACAGCCGTGGAGGCCAATCATATGCTCCATAGACAAACCGATGTGGTCACCCCAAATGGTCTGAATGTGAGGAAGTTCTCAGCCATGCACGAGTTCCAGAACCTGCACTCCATGAGCAAAGCCAAGATCCAGGAGTTCGTTAGGGGTCACTTCTACGGCCACCTGGACTTCAATCTGGAAAAGACCTTATTCTTTTTCATCGCTGGACGATACGAGTTTTCTAACAAAGGAGCAGATCTGTTCCTCGAGTCTCTGTCCAGATTAAACTACTTGCTAAGGgTTCACAAGAGTGACGTTACAGTGGTAGTGTTTTTCATCATGCCTGCCAAAACCAACAACTTCAACGTAGAGTCTCTCAAAGGACAGGCTGTCCGCAAGCAGCTATGggACACCGCTCAGTCAGTGAAGGAGAAGTTTGGAAAAAGGCTTTACGAGAGCTTGTTAAGGGGCGAGATCCCGGACATGAGCAAGATCCTGGAGAGAGATGACTTCACAATCATGAAGAGGGCCATTTATGCAACGCAGAGACACTCTCTTCCTCCAGTAACAACTCACAACATGCTGGATGACTCCACAGACCCCATCCTGAGCAACATCCGCCGCATCGGCCTTTTCAACGGACGCAATGACCGAGTGAAGATCGTGTTCCATCCGGAGTTCCTGTCCTCCACCAGCCCCTTGCTGCCCATGGACTATGAGGAGTTTGTGCGTGGCTGCCATCTGGGAGTGTTTCCATCTTACTATGAACCATGGGGCTACACTCCAGGAGAGTGTACCGTCATGGGCATCCCCAGCGTGACCACCAATCTGTCTGGGTTTGGCTGTTTCATGGAGGAACATGTATCTGACCCCTCTGAATATGGCATCTACATTGTGGACCGGCGCTTCCGTTCTGCGGACGAGTCGTGTAACCAGCTGACTCAGTTCATGTTTTCGTTTTGCCAGCAGTCGCGTAGACAGCGAATAATCCAGCGCAACCGCACGGAAAGACTCTCTGACCTGCTGGACTGGAGATACCTCGGACGGTTCTACATGCACGCCCGACATCTGGCCCTCAGCAGATCCTTCCCTGGTAAATTCAAAACGGACCACCTTAACATCGCATCGACTCAAGGCTTCCGTTACCCCCGACCTGCTTCCGTCCCTCCATCCCCGTCGGCTTCCCTCCACTCCACCCCTCACCACAGCGATGAGGAAGATGACGACACCTATGACGAAGAGGAGGAAGCGGAGAGGGACAGGCAGAACATCAAGGCACCGTTTACTCTGGGTGCAGAGCCTGAGGGTAAGAGCAAACAACCGCTGGAAAATGGAAATTAAGATCTGCACCCTCCTGCTCCAGTAGTTCAGACTCTAGGACATATTTACACCCCTGCCCTCTGAGAATGTGCTACATTTGTCTGAATACAGCTTTTGAATGGATTATTATAATGGGAAGATATCTTTAACGTAGTGGTATTCGATCACACCGAGAATCTGGGATTAAATAACCCTTTTAAACTTGTAACTGATGAAAACCGAACCATGTGAATGGTTCTCATTTCGAACTCATTTGTACTTATGATTGTTTCTTCCGTCGGAGATGAAATCATGCTTAAAAACATGACCATCAGGTTTGACATGAACTTGCAGAGTTCGTGCAATTCAAATGCTGctgtcattaaaacaaaagcgggacaaataaaaatgtaacattagtTTTCCAGTTGAACTTAAATCATATTATGATACTGACAACTTTCcatgaaatgcatgaaatgtttattaaaaaaagtctctttttgATAGAAATTTGCTACCAAACACACATCTTGTGTTTTAAACCAAATTTAgctataataattttaatgtgaaaaagacACCTTTACATACAGTGCTTTGCAAAAGTTTTCATACccctacctttttttttttttttttttttttttcccccctcatggtttattttgatgtcttatgttaaactgctttaaattacttttttccacTTCATTCTACACTCTATACAACGTAatggcaaagcaaaaaaaacaaaaacaaaacatctttgcaaattcattaaaaataaaacttaaaggtcccattgcataagtattcatacccttatcTTGGGAGAAGATTTTAGCTCAGAGGCATTCATATTGCTATGTTGCATATGTTACTACACTTCAGGTGAAGTTACCCTGTGTCCCATTTAATTGAATAGGTATGATTTAGAAAGATAATGGAAGAAGTTTAGATCAACTAGGAGGACTTTTCGTAGAGCTGGCTGAACAGAGCAACCGATGGAGAAGGGCTCTgcttaatttaaagcagtttaacaaaAGGCTGTATAACATAACGTGTAAGAATGAAAGGCTACGAATACTTTGGCAAAGCAAAGTTCAACCACAAAAAAATTCCACCCGTGTTTTTATAAAGAGTCACACTCACAGTAGTGCTTATCAGTGcaaattcagtttaattaattGAGAAAATGTTCACACATTcgcaaatatgtattttacagACCAGTCAATTCACATGTCGATTTAACATGAGAAAATGAATAGGACAAAAATCTGTACAGTTAACTTTATATTACACATAATTTTAATCATCATAAATACTCTTTTCCAAGATATGTCTTGAAAAAACAACcattattcacttttattaatactttcgcctgaaagaaataaagaaattaaaaaata

Function

symbol description
gys2 Predicted to enable glycogen (starch) synthase activity. Predicted to be involved in glycogen biosynthetic process and response to glucose. Predicted to be located in cortical actin cytoskeleton; cytosol; and ectoplasm. Predicted to be active in cytoplasm. Is expressed in liver and male organism. Human ortholog(s) of this gene implicated in glycogen storage disease. Orthologous to human GYS2 (glycogen synthase 2).

NR:

description
glycogen [starch] synthase, liver isoform X1

GO:

id name namespace
GO:0005978 glycogen biosynthetic process biological_process
GO:0009749 response to glucose biological_process
GO:0043265 ectoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0004373 glycogen (starch) synthase activity molecular_function

KEGG:

id description
K00693 GYS; glycogen synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237148.1 True 3816 mRNA 0.45 16 8490359 8501938

Neighbor

gene id symbol gene type direction distance location
dennd5b dennd5b,LOC107659847,LOC107725568,LOC107744899,LOC107694693 coding downstream 31357 8424095 ~ 8459002 (-)
sinhcaf fam60a,LOC107694695,LOC107586002,LOC107725569,LOC107744898,LOC107659848,LOC103028480 coding downstream 67454 8415293 ~ 8422905 (-)
caprin2 LOC107725657,LOC107744896,LOC107694696 coding downstream 76030 8405825 ~ 8414329 (-)
btg1 btg1,LOC107585922,LOC107725570,LOC107659850,LOC107744895,LOC107690792,LOC107565641 coding downstream 115847 8367536 ~ 8374512 (-)
LOC122342541 LOC107725512,LOC107565629,LOC107690781,LOC107744891,LOC107585840 coding downstream 164513 8321454 ~ 8325846 (-)
ldhba ldhba,LOC107659842,LOC107589975,LOC107744904,LOC107725606,LOC107694687,LOC107586539 coding upstream 2503 8504441 ~ 8509566 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding upstream 16096 8518034 ~ 8528270 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding upstream 26435 8528373 ~ 8532454 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding upstream 77113 8579051 ~ 8752834 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding upstream 278352 8780290 ~ 8803840 (-)
G27240 NA non-coding downstream 12048 8476164 ~ 8478311 (-)
LOC122342531 NA non-coding downstream 243850 8200177 ~ 8246509 (-)
LOC122342218 NA non-coding downstream 320772 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 363535 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 366499 8123114 ~ 8123860 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 31893 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 260161 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 302217 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 303306 8805244 ~ 8809184 (-)
G27253 NA non-coding upstream 307829 8809767 ~ 8815012 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 22331 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 240432 8247911 ~ 8249927 (-)
G26951 NA other downstream 931906 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1269448 7214334 ~ 7220911 (-)
il22 NA other downstream 1749618 6737641 ~ 6740741 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 11692 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 368277 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 390081 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 502322 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 770034 9271972 ~ 9300179 (-)

Expression


Co-expression Network