jupb (jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403)


Basic Information

Item Value
gene id jupb
gene name jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27981070 ~ 28037700 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237153.1
CGGTGTAGAAACTGAACCGCTAGAGGTCCCGCCCACTCGCTCGCTCGCGCAACCGGAGACTTCACGGAGGGTTCCGCTGCTGTCAGACTCTATTGCTCAACGTTTGCCAGACTTGGATAAGAGTGGACGGAGGGACTTGGGGCCGGAGAAGGGATTCTCGAGCTGATTTTTGTGGAGACTCTCGCCAGTGGATTGTGATCGTTCCGCAAGGTTGAATTAAGGCTGGACAGTGGTGATGTCACTGCAAATGAGCGAGGCAGAGGGGGCTGTGAAGGTGGAGGAGTGGCAGCAGACGTTTTACACATCAGACTCGGGCATTCAGTCCGGAGCCACCACCATTCGAGACGAGGACGAGTCTGAGATCAGCAAGAAGTACAGCGTCAGTGCCAGCGCTGGCGAGAGCGCCACAGATATCGAGGCTCAGTACAGTCTAACTCGAGCTCAGAGAGTACGCGCGGCCATGTTCCCCGAGACGCTGGTGGAGGGAGAGACGGTGCTCACCACGCAGAGCAATCCAGACCAGCCCACCAATGTCCAGAGACTGGCTGAACCCTCGCAGCTCCTCAAAACAGCCATCGTCCACCTCATCAACTATCAGGATGACGCTGAGCTGGCCACCCGCGCCGTACCAGAGCTCACCAAACTGCTGGCCGACGAGGACCAGGTGGTGGTAAACAAGGCAGCTCTGATTGTGAACCAGCTTACACGGAAGGAGGCGTCTCGCCGCGTGCTCATGCAGTCTCCTCAGATGGTGTCGGCTGTGGTGAGGGCCATGCAGAACACCGGAGACCTGGAGACGGCGCGCTGCGCTGCCAGCGTCCTGCACAGCCTCTCCCACCAGCGCGAGGGACTGCTAGCCATCTTCAAATCAGGCGGCATCCCCGCGCTAGTGCGCATGCTCAGTTCCCCTATGGAGTCAGTGCTGTTCTACGCCATTACCACGTTACACAACCTGTTACTGCACCAGGAGGGAGCCAAGATGGCGGTGCGTCTGGCCGATGGACTGCAACGGATGGTCCCTCTTCTGAAAAAGAGCAACCCTAAGTTCCTGGCCATCACCACAGACTGCCTGCAGCTGCTGTCTTACGGCAATCAGGAGAGCAAGTTGATCATCCTTGCAAATGGAGGGCCTGAAAGTTTGGTGTTCATTATGAGAAACTATAACTACGAGAAGCTCCTGTGGACCACCAGCAGAGTCCTGAAGGTGCTTTCTGTCTGTCCAAGCAACAAGCCGGCTATTGTTGATGCTGGAGGTATGCAGGCTCTCGGCCAACATCTCACAGGTTCGAGTCAGCGTCTGACACAGAACTGCCTGTGGACCCTGAGGAATCTCTCTGACGCTGCAACCAAGCAGGAAGGTCTGGATGGTCTCCTGCAGATCTTAGTGAGTCAGCTGGGTTCAGACGACGTGAACATGCTGACCTGTGCTACTGGCATCCTGTCAAACCTCACCTGCAACAACGCGCGCAACAAAGCCCTGGTCACCCAGAGCGGCGGGGTGGAGGCGCTCATTCACGCCGTGCTGCGGGCCGGAGAGAAGGAGGACGTGGCCGAGCCGGCCGTCTGCGCCCTGCGTCACCTCACGAGCCGCCACCCTGACGCAGAGCTGGCCCAGAATGCAGTGCGTCTGCACTATGGCATCCCCGCCATCACCAAGCTCTTAGGCCAGCCGCACTATTGGCCTGTGGTAAAGGCCACAGTGGGTTTGATTCGTAACTTGGCCCTGTGTCCGGCCAATCAGGCGCCTCTGAGAGAATCTGGGACAATCCCTCGACTGGTCAACCTGCTGCTGAAAGCTCATCAGGAAACTCAAAGACACGGCTCAGGGGCCCAGCAGACCTATCAGGATGGCGTACGCATGGAGGAGATCGTGGAAGGCTGTACAGGCGCTTTGCATATACTGGCCAGAGATCCCATCAACCGAGGGGAGATCGCCAGCATGCAGACCATTCCTCTGTTTGTGCAACTTCTGTACTCCTACGTGGAGAACATAAAGCGCGTGTCTGCCGGTGTTTTGTGTGAACTGGCTCTGGATAAACAGTCTGCTGAGATGATCGACGCGGAAGGAGCCTCTGCACCTCTAATGGAGCTCCTGCACTCTCCCAATGAGGGGATCGCCACGTATGCCGCAGCTGTTCTCTTCCGCATCTCTGAGGACAAGAGTTCAGACTACAGGAAGCGTGTGTCAGTGGAGCTCACTCATTCCCTCTTCAAACATGACCCCGCCGCCTGGGAAATGGCACACGCCGCCATGCCGCTCGACCCTGGATATATACCAGATGATCTGGACGCAGTTTACCCTCCATATGGTTATTCTGATTTACCCATGGACGGCCTCCCGCTGGACGCCGAGCTACATGAGCAATACATGCCAGAAATGACCTACGACCCTCGACAGGTGTACCCAAATCCTCTTTAACAACACTGCCAGCAG
>XM_043237154.1
CGGTGTAGAAACTGAACCGCTAGAGGTCCCGCCCACTCGCTCGCTCGCGCAACCGGAGACTTCACGGAGGGTTCCGCTGCTGTCAGACTCTATTGCTCAACGTTTGCCAGACTTGGATAAGAGTGGACGGAGGGACTTGGGGCCGGAGAAGGGATTCTCGAGCTGATTTTTGTGGAGACTCTCGCCAGTGGATTGTGATCGTTCCGCAAGATGTTAACAGGTGGGCAGGAGTCgcgtggattacttgtggattaatgtgatgtttttatcagctgtttggactctcgttctgacggtaCCCATTGACTTCAGCGGTTGAATTAAGGCTGGACAGTGGTGATGTCACTGCAAATGAGCGAGGCAGAGGGGGCTGTGAAGGTGGAGGAGTGGCAGCAGACGTTTTACACATCAGACTCGGGCATTCAGTCCGGAGCCACCACCATTCGAGACGAGGACGAGTCTGAGATCAGCAAGAAGTACAGCGTCAGTGCCAGCGCTGGCGAGAGCGCCACAGATATCGAGGCTCAGTACAGTCTAACTCGAGCTCAGAGAGTACGCGCGGCCATGTTCCCCGAGACGCTGGTGGAGGGAGAGACGGTGCTCACCACGCAGAGCAATCCAGACCAGCCCACCAATGTCCAGAGACTGGCTGAACCCTCGCAGCTCCTCAAAACAGCCATCGTCCACCTCATCAACTATCAGGATGACGCTGAGCTGGCCACCCGCGCCGTACCAGAGCTCACCAAACTGCTGGCCGACGAGGACCAGGTGGTGGTAAACAAGGCAGCTCTGATTGTGAACCAGCTTACACGGAAGGAGGCGTCTCGCCGCGTGCTCATGCAGTCTCCTCAGATGGTGTCGGCTGTGGTGAGGGCCATGCAGAACACCGGAGACCTGGAGACGGCGCGCTGCGCTGCCAGCGTCCTGCACAGCCTCTCCCACCAGCGCGAGGGACTGCTAGCCATCTTCAAATCAGGCGGCATCCCCGCGCTAGTGCGCATGCTCAGTTCCCCTATGGAGTCAGTGCTGTTCTACGCCATTACCACGTTACACAACCTGTTACTGCACCAGGAGGGAGCCAAGATGGCGGTGCGTCTGGCCGATGGACTGCAACGGATGGTCCCTCTTCTGAAAAAGAGCAACCCTAAGTTCCTGGCCATCACCACAGACTGCCTGCAGCTGCTGTCTTACGGCAATCAGGAGAGCAAGTTGATCATCCTTGCAAATGGAGGGCCTGAAAGTTTGGTGTTCATTATGAGAAACTATAACTACGAGAAGCTCCTGTGGACCACCAGCAGAGTCCTGAAGGTGCTTTCTGTCTGTCCAAGCAACAAGCCGGCTATTGTTGATGCTGGAGGTATGCAGGCTCTCGGCCAACATCTCACAGGTTCGAGTCAGCGTCTGACACAGAACTGCCTGTGGACCCTGAGGAATCTCTCTGACGCTGCAACCAAGCAGGAAGGTCTGGATGGTCTCCTGCAGATCTTAGTGAGTCAGCTGGGTTCAGACGACGTGAACATGCTGACCTGTGCTACTGGCATCCTGTCAAACCTCACCTGCAACAACGCGCGCAACAAAGCCCTGGTCACCCAGAGCGGCGGGGTGGAGGCGCTCATTCACGCCGTGCTGCGGGCCGGAGAGAAGGAGGACGTGGCCGAGCCGGCCGTCTGCGCCCTGCGTCACCTCACGAGCCGCCACCCTGACGCAGAGCTGGCCCAGAATGCAGTGCGTCTGCACTATGGCATCCCCGCCATCACCAAGCTCTTAGGCCAGCCGCACTATTGGCCTGTGGTAAAGGCCACAGTGGGTTTGATTCGTAACTTGGCCCTGTGTCCGGCCAATCAGGCGCCTCTGAGAGAATCTGGGACAATCCCTCGACTGGTCAACCTGCTGCTGAAAGCTCATCAGGAAACTCAAAGACACGGCTCAGGGGCCCAGCAGACCTATCAGGATGGCGTACGCATGGAGGAGATCGTGGAAGGCTGTACAGGCGCTTTGCATATACTGGCCAGAGATCCCATCAACCGAGGGGAGATCGCCAGCATGCAGACCATTCCTCTGTTTGTGCAACTTCTGTACTCCTACGTGGAGAACATAAAGCGCGTGTCTGCCGGTGTTTTGTGTGAACTGGCTCTGGATAAACAGTCTGCTGAGATGATCGACGCGGAAGGAGCCTCTGCACCTCTAATGGAGCTCCTGCACTCTCCCAATGAGGGGATCGCCACGTATGCCGCAGCTGTTCTCTTCCGCATCTCTGAGGACAAGAGTTCAGACTACAGGAAGCGTGTGTCAGTGGAGCTCACTCATTCCCTCTTCAAACATGACCCCGCCGCCTGGGAAATGGCACACGCCGCCATGCCGCTCGACCCTGGATATATACCAGATGATCTGGACGCAGTTTACCCTCCATATGGTTATTCTGATTTACCCATGGACGGCCTCCCGCTGGACGCCGAGCTACATGAGCAATACATGCCAGAAATGACCTACGACCCTCGACAGGTGTACCCAAATCCTCTTTAACAACACTGCCAGCAG

Function

symbol description
jupb Predicted to enable several functions, including alpha-catenin binding activity; cadherin binding activity; and transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell adhesion and desmosome assembly. Predicted to be located in cytoplasm and desmosome. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Human ortholog(s) of this gene implicated in cardiomyopathy (multiple); palmoplantar keratosis (multiple); renal cell carcinoma; and reproductive organ cancer (multiple). Orthologous to human JUP (junction plakoglobin).

NR:

description
PREDICTED: junction plakoglobin-like

GO: NA

KEGG:

id description
K10056 JUP; junction plakoglobin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237153.1 False 2434 mRNA 0.57 15 27981070 28037700
XM_043237154.1 True 2538 mRNA 0.57 16 27981070 28037700

Neighbor

gene id symbol gene type direction distance location
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding downstream 3895 27969910 ~ 27977175 (-)
LOC122343310 LOC107752528,LOC107549854 coding downstream 11301 27966309 ~ 27969769 (-)
pdk2b pdk2b,LOC107665156,LOC107752527,LOC107549851,LOC107753849,LOC107562510,LOC107666345 coding downstream 29073 27946996 ~ 27951997 (-)
flot1a flot1a,LOC107665160,LOC107549850,LOC107752515,LOC107666343,LOC103027319,LOC108433738 coding downstream 565420 27409088 ~ 27415650 (-)
LOC122342367 NA coding downstream 1111922 26865773 ~ 26869148 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding upstream 75802 28113502 ~ 28118332 (-)
LOC122342473 znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding upstream 133551 28171251 ~ 28177586 (-)
LOC122343218 omp,ompa,LOC107735103 coding upstream 174546 28212246 ~ 28213047 (-)
pkma pkma,LOC107712845,LOC107665073,LOC107595343,LOC107668482 coding upstream 330755 28368455 ~ 28382557 (-)
LOC122342383 NA coding upstream 916648 28954348 ~ 28956291 (-)
G31728 NA non-coding downstream 38266 27941679 ~ 27942804 (-)
G31723 NA non-coding downstream 57894 27920620 ~ 27923176 (-)
G31718 LOC107549838,LOC107752523,LOC107554337,LOC107754066,LOC107666346,LOC107665176 non-coding downstream 76387 27898767 ~ 27904683 (-)
G31692 NA non-coding downstream 160817 27820024 ~ 27820253 (-)
G31517 NA non-coding downstream 334645 27645026 ~ 27646425 (-)
G31736 NA non-coding upstream 42475 28080175 ~ 28080381 (-)
G31737 NA non-coding upstream 58194 28095894 ~ 28096491 (-)
LOC122342474 NA non-coding upstream 89514 28127214 ~ 28129808 (-)
G31759 NA non-coding upstream 188714 28226414 ~ 28228301 (-)
G31765 NA non-coding upstream 207290 28244990 ~ 28250107 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other downstream 336338 27642692 ~ 27644732 (-)
G31503 pvrl2l,LOC107549846,LOC107665153,LOC107554349,LOC107752518,LOC107753776,LOC107666334 other downstream 365129 27539355 ~ 27615941 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other downstream 591672 27383753 ~ 27389398 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other downstream 598243 27379059 ~ 27382827 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other downstream 613421 27366412 ~ 27367649 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other upstream 27597 28065297 ~ 28067762 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other upstream 82547 28120247 ~ 28130380 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other upstream 143866 28181566 ~ 28187257 (-)
G31776 LOC107712874 other upstream 326325 28364025 ~ 28365196 (-)
G31868 NA other upstream 806493 28844193 ~ 28846421 (-)

Expression


Co-expression Network