LOC122342945 (LOC107563545)


Basic Information

Item Value
gene id LOC122342945
gene name LOC107563545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23633798 ~ 24144571 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237168.1
GAGGAGGCGTGGCTTCGAGCTTCACGCGCTTCAGTTTGGGACACAGATACAgtggtctgtgtttgtttccacTAGCTGCTCGTGAAACGGAAGTTTAACACATTAGAATCGTGAGTTGGTGAAGGACGATGGCGTCTGTTAAAAAGCTGCTCTTGGACCAACTGATGGAGCTGGCAGAAGATGAACTGAAGAAATTTCATTGGCATTTAGTGAATTTTTATCAAAAGTGCATATCAAAGTCTGAATTGAAAAATGCAGATAGACTTGACACAGTAGATAAGATGGTGATGTGTTTTGGACCAGATGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGCAGAATGAACACAAGCaagCTCAGACTGAGGACAATATGAAGACATCTGTCCCTGTTAGAGagctgcaaaatgtcttgaaaactcacaaaaacaacatgaagatgaaggcaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGctttcaagaacaaaaaaacacaggacaaaccaatcaaatgcaatgatatatttactgaactAAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtctgtgcacaagttcatcctggactgggccGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGATGTACCTAGAGAAATCAAAGttatatacagaatataaacttgtgtttatatttgatggacttgatgagAGTCGACTGCCTTTGATTTTTGAAAGTGATGCATTGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTCTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAAGTGCAAGGATTCACTGACCTACAAAAGGAGGAGTACTTCAGAAAGAAATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGTGTCAGAAATATGGCAAACAACAAGAAGGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTCAGATCTTTAAGAAGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGAGCCTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCATCtgttacctgaaaaaaaacaagcaagagctgaagtttttctttgatgatTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATGGCATGACTTAACAGAGAGAGCCATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAAATCTGCTCAAAGGcctgctcacacacactgaagacaCCACAGAGAGCATCAGAAATCTAAGTGCACATATTAAAGAATTACAACAACAGGACATCTCAGATGAAACTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAGGATAATTCATTATATGAGGAAATCCAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTAGATGAGTTCAACCCAAAGAGGTTCACATCAAAACTAGCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctATTCGAAAGCTgtggttttgatgaaacatgctgtgaaaCTCTGTCCTCTGCTCTACAATCATCAAACCATCTGACAGAGCTGAACCTGAGGACCAAtcatctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGTTTAAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTCTATAAGTTTATCTTCAACTTTACAAtcatcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcgtCTTTCTGATGGACTCAATAGTCCAGTCTCTAAACTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttcttttggatggactgaagagtccaaactctaAGCTGGAGATACTGAGattttccacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaactctgttctgaaagagctggacctgagtaacaatgatttgcaggattcaggagtgaagcttcttTCTGATGGACTCAATAGTCCAATTTCTAAACTGGAGATACTAAGATTTTCCACATGTAATATCACTGCACAGTCTTGTgggagtttgtcttcagttttacaatcctcaaactctgtcctgaaagagctggacctgagtaacaatgatctgcaggattcaggagtgaagcttctttctgaaggactgaagagtccaaactctaGACTGAAGATACTGAGGTTGTCTGGCTGCATGGTGACAGAGaaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgcGCACTGGACAAACTCAGCGTGGATCATGGAGGACAGTCTAGGATTACAGTAGgactacaaaaatATGCCTGTGctctcacactggatccaaacacagctcACATTCATCTCATTCTGTCTGAGGACAACAGAAAGGTGATACACGTGGAAGAGGATCAGTCATATGCTGATCATCCAGAGAGATTCATAGATAATcctcaggtgttgtgtagagagagtctGCCTGAACGCTGTTATTTGGAGGCTGAATGGACTGGAACTGCTGCTGTATGCGTATCATATAAAGGCATCGGCAGGAAAGGAGGGACTGATTGTGTGTTTGGAGCCAGTGAAAACACCTGGTGTCTGATCTGCTATGAGGACAGTTTCAGCGTCCGTTGTAATGATAGGTTCACTGAGATACCTTTCCCTTCAGGTCACTCTAACAGAATTGGAGTGTATGTGAACATGTCTGCTGGAACCGTGTCTTTCTACGTtatctctgacacacacacgctcaaacacttacacacatacaacacCACTTTCACTGAGTCTCTCTGTGCTGGATTTGGCTTTATGGGTTATATTTTCGACTCATCAGCATGCCTGTGTCTGATTGATAAACCTCTGAACAACAACTAAGAGGCCAAGAGGACAACAACTATCTTCATTGCTGGGATCTATCATACAAGTACATATTTTGTCCACAAGTGTAAGTCTGTTTATCTTTATaccatatatcatatatattttgaggTGATTTTGTTGaacaacatttataaataaattatgataatatattaatgattgagtgaaatagcaaaaacaaaaagtcacaACTGTGTTTGTTGGGTAGTTGGTGTCTGTGATTGTGcagtaaatgacatttatttatatattactaaaaagagagataatctgcattgttaaagtgctatttaaataaagatatgcACTGTTAA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237168.1 True 4207 mRNA 0.41 13 23633798 24144571

Neighbor

gene id symbol gene type direction distance location
LOC122342330 LOC101883771,LOC101885620,LOC108191338 coding upstream 18868 23613478 ~ 23614930 (+)
LOC122343152 NA coding upstream 257927 23351927 ~ 23375871 (+)
LOC122343131 NA coding upstream 404066 23226211 ~ 23229732 (+)
LOC122343008 LOC107575457 coding upstream 450252 23168155 ~ 23183546 (+)
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 885178 22739960 ~ 22748620 (+)
LOC122343029 LOC107717679,LOC107693607,LOC107575410 coding downstream 161 24144732 ~ 24149459 (+)
LOC122343033 NA coding downstream 8185 24152756 ~ 24156499 (+)
LOC122342331 NA coding downstream 77506 24222077 ~ 24225829 (+)
LOC122342332 NA coding downstream 87795 24232366 ~ 24244625 (+)
LOC122343090 NA coding downstream 100204 24244775 ~ 24252528 (+)
G30674 NA non-coding upstream 94761 23400056 ~ 23539037 (+)
G30676 NA non-coding upstream 214289 23416682 ~ 23419509 (+)
G30658 NA non-coding upstream 350986 23274505 ~ 23282812 (+)
G30654 NA non-coding upstream 367496 23265866 ~ 23266302 (+)
G30653 NA non-coding upstream 369057 23264533 ~ 23264741 (+)
G30819 NA non-coding downstream 165768 24310339 ~ 24314288 (+)
LOC122343172 NA non-coding downstream 273272 24417843 ~ 24419568 (+)
G30812 NA non-coding downstream 311451 24456022 ~ 24486887 (+)
G30877 NA non-coding downstream 570126 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 844296 24988867 ~ 24989274 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 465791 23163695 ~ 23168007 (+)
G30632 NA other upstream 474042 23157559 ~ 23159756 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other upstream 503609 23129106 ~ 23130189 (+)
LOC122342317 NA other upstream 853659 22777983 ~ 22780139 (+)
LOC122343019 LOC107705900 other upstream 951086 22661826 ~ 22682712 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 309699 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 320883 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 491781 24636352 ~ 24638654 (+)
LOC122343125 NA other downstream 494518 24639089 ~ 24646601 (+)
LOC122343086 NA other downstream 528320 24672891 ~ 24674412 (+)

Expression


Co-expression Network