LOC122342948 (LOC107575457,LOC107741609)


Basic Information

Item Value
gene id LOC122342948
gene name LOC107575457,LOC107741609
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22385863 ~ 22395600 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237171.1
TGCATTTCCCTTTTGGCAAGACAGAAGTGAAAGCAGAAGTTGAGTTGTACATTCAGTGTTCACACTTgaccgttttatttttaaaaactgatctTTATTATTTGCTGATCTGGAAATTTACATGGACCTAATGAAGAAACCAAGGACATATTGAGAACTTGTCTAAAAACCGAACGTCTTAATCAAAGCAAATCTTGAGCTGTGGAGCGCAAAGTCACTTCCTTATTCAAcTGTGAGTTGTTGAAGGAAGATGGCGTTTGTTAAAGAGCTGCTCGTGGATTCACTGAAGCAGCTGGTAGACGCTGAACTAAAGGAGTTTCACTGGCGCCTAATGAATGCACATAAGCATATATCCAAGTCTGAAATGGAGAAGGCAGATAGATTCGACACAGTAGATAAGATGGTGGTGTGTTTTAGAGCAGAAGAAGCTGTGGAGGTCATGGCATCCTGAGAAAGATGAAACAAAATGATCTGGCTGAACGGTTGGTGAAAGAACACAAGCAAGCTAAGACTGAGGGCGACGTGAATATATCTGTTGCTACTGGAGagctgaaaagcttttttgaaactcacaaaaaaaacatgaagaagaaagcagaatgtatttttgagggcaaaaaagaaaatgaagcacaaCTCAAGGCTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGGAAGATGTCAATCACGAACATGAGATTCAACAGATCGATGGTGCTTTAAAGCGTagaaaaacacaggaaaaacCAATTAAATGCAATGATATATTCACTGAACTTAGGAAAAATAACAAGAAGAAGATTGTGCTGACCAAGGGAGTCGCTGGgattggaaaaacagtctctgtgcaAAAATTTATCCTGGACTGGGCAGAAGGAACAACCAATCCGGATATACACTGTGTTTTCCTgcttccattcagagagatCAACATTATTAAAGACCGAGAGGTCAATCTACATGAGTTTCTGCTGAAATTTTATCCTGAAGTGAAGAACCTAGAGAAATTAAAGCTATATGAGGAATATAAgcttgtatttgtatttgatggacttgatgagAGTCAACTGCCATTGAACTTTAAAAGTGAAACATTGAACACATTTGAGGAAAGAGCATCTGTAAATGTGGTCTTTACAAGCCTGGTCAAAGGTGAACTGCTTCCATCAGCTCTTGTCTGGGTGACATCACGACCatcaacagccaatcagatccctccTCAGTATGTAGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGAATCAAAGATGAGAGTCTGTCCTCCAGAATTATCTCACACATTAAGACATCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagCCACAGTACTTCAGGATATTCTCTCTGAGAACAATGAAGAGAACATCAACACAACactgactgaaatgtacattcactttCTGCTGATACAGATGGACATGAAGAACCAGAAATATGATGAACAAGATGAAAGAGAACGTACAGAGCACTTACAATTAAATAGAGAGATGATTGTGAAGTTAGCCAAGCTAGCATTTGAACAGCTGAAGAAGGAACAGATTGTGTTCTATAAGGACGATCTGAAAGCATGTGGTATTGATGCGAGCACTGAAATTGAGTTCACAGGAATGATCGCTGAGATCTGCAAAAGGGAAAACAGACTTCCTGGAGCAAAGATCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTCGCTGCAGTGCATGTGTTCCTCTGTTACCTGAACAAGAACATACGAGAGCTTCAGTTCTTTGATAATCCAGACAAAAATCTCACATTAGAGAAGTTACTGCAGAAAGCCATTGAAAAAGCCATGGAGAGTCATAGAGGACATCTGGATCTGTTCCTGCGATTTCTGTTGGGCATTTCACTGAAATCCAGTCAAATCCTGCTCAAaggcctgatcacacacactgaagacaCTACAGAGAGCATCACAAGAATAAGTgaatacattaaacaaaaacaaaacgagtAAAATATCTCAGATGAAGCTTTAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATACGAGGAAATCCAGAGGTATctcagttcaaatgaacatccaGGAAGAAAACTCTCATCTTCAATGTGCACAGTCTTGACTTATGTATTGCTGATATCAGAGAAGGTGCTGGATGAGTTCAACCCGAAGAGATACACATCAAAACGAGCGGATATCAAGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctATTTGATGGCTGTGGTTTTGATGACAAATGCTGTGAAATTCTGTCTTCGGCTCTTCAATCATCAAACTCTTATGTGAGGAatctggacctgagtaacaatgaccttcaggattcaggagtgaagctgctttctgatggactgaagagtccacaCTGTCAACTGAACATACTGAGACTTCCCATCTGTAATCTCACTGCACCGTCTTGTGGGAGTttatcttcagttttacaatcctcaaactctgttctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctttctgatggactgaagagtctAAACTCAAAGCTGGAGATTTTAAGattttccacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaacactgtcctgagagagctggacctgagtaacaatgatctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactcaAAGCTGGAGATTTTAAGattttccacatgtaatctcactgcacagtcttgtgagagtttgtcttcagttttacaatcctcaaacactgtcctgagagagctggacctgagtaacaatgatctgcaggattcaggagtgaagctgctctctgaaggactgaagagtccaaactcaAAGCTGGAGATTTTAAGATTTTCCATATGTAATCTCACTACACAGTCTTGTGagagtttgtcttcagttttacaatcctcaaactctgtcctgagagAACTGGACCTGAGTagcaatgacctgcaggattcaggagtgaagctgctttctgaaggactgaagagtttAAACTCCAAGCTGGAGACAATGAGgttgtctggctgcatggtgacagaggaaggctgtaattatttgtcttcagctctgacttcaaacccctcacacctgaaagagctggatctgagctacaatcatcctggagattcgaagctgctctctgaaaaactggaggatccaaactgctcACTGAATAAACTCAACATTGATCATGGAGGAGAATCCAGGATTACAACAGGACTGAAGAAATatgagtgttttctcacactggatccaaacacagcacacactaaaCTCAGACTGTCTGAGGACAACAGAAGAGTAACATTTGTGTTTGAGTCTCAGccatatcctgatcatccagacagatttaaAATGTCTCAGGTGTTGtgtggagagagtgtgtgtggacgctgttactgggagactgagtggagTGGGTTTGTGGATATATCGGtgtcatataagaacatcagcagaAGGAGAggtgatgagtgtgtgtttggacgtaatgatcagtcctggagtttgatctGCTCTCGCTACAGTTACTCATTCATACACAATAACAGAGAGACTAATTtctctgtgaagcccatcaTCATCAGCAGAAGACCAGAAGTGTATGGTAATGATAATATCTATAGAACAGGAGTGTATTTGGATGAGAGCGCAGGGATTCTGTCGttctacagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggttttatcttttttttggatcatcagtgaaactatgttgatgaatcagaagagactgagCAGAGATTCTACCCATAATGCTTTGAGCATGATTGATGAAGAACATGTAATcaatttctgttatttttgtatagaaatacaaatactaaaaaaaaaaagataaatcgACTTGATATCAGATTTTAATCAATGTTTGTATCATGAATATAACTGATTTTTGACAAGAATGAAATGAGCTTCTggctttataaaatattaaattataaattaaccta

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237171.1 True 4191 mRNA 0.41 13 22385863 22395600

Neighbor

gene id symbol gene type direction distance location
LOC122342947 NA coding downstream 51070 22325510 ~ 22334793 (-)
LOC122343126 si:ch211-232d10.1,LOC107747635,LOC107569099,LOC107698614,LOC107574820 coding downstream 65766 22315908 ~ 22320097 (-)
LOC122343076 LOC107718513,LOC107692125 coding downstream 146856 22235757 ~ 22239007 (-)
LOC122343106 NA coding downstream 507071 21870415 ~ 21878792 (-)
LOC122342306 LOC107749047,LOC107728228 coding downstream 525579 21847120 ~ 21860284 (-)
LOC122343006 NA coding upstream 33474 22429074 ~ 22431623 (-)
LOC122343060 LOC107677814 coding upstream 99686 22495286 ~ 22499529 (-)
LOC122342313 LOC107703281,LOC107657504,LOC107693510,LOC107570418 coding upstream 172624 22568224 ~ 22577494 (-)
LOC122342314 LOC107575554,LOC107666720 coding upstream 182746 22578346 ~ 22585463 (-)
LOC122343061 LOC107677814 coding upstream 192123 22587723 ~ 22593908 (-)
G30465 NA non-coding downstream 104674 22280672 ~ 22281189 (-)
G30423 LOC107575420,LOC107667978,LOC107563545 non-coding downstream 576245 21676876 ~ 21809618 (-)
G30425 NA non-coding downstream 709732 21673723 ~ 21676131 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding downstream 712439 21668810 ~ 21673424 (-)
G30408 NA non-coding downstream 885865 21499638 ~ 21499998 (-)
LOC122343195 NA non-coding upstream 918 22396518 ~ 22398023 (-)
G30506 NA non-coding upstream 29992 22425592 ~ 22428757 (-)
G30518 NA non-coding upstream 91175 22486775 ~ 22487119 (-)
G30520 NA non-coding upstream 91820 22487420 ~ 22488169 (-)
G30525 NA non-coding upstream 104562 22500162 ~ 22501174 (-)
G30450 NA other downstream 140703 22128454 ~ 22245160 (-)
G30457 NA other downstream 169393 22216035 ~ 22216470 (-)
LOC122343153 NA other downstream 602272 21387853 ~ 21783591 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other upstream 1021291 23416891 ~ 23437015 (-)
G31017 NA other upstream 1082925 23478525 ~ 23546369 (-)
G31050 NA other upstream 1349886 23745486 ~ 23771768 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other upstream 1714624 24110224 ~ 24110673 (-)
G31134 NA other upstream 1908496 24304096 ~ 24497596 (-)

Expression


Co-expression Network