LOC122342953 (LOC107575420)


Basic Information

Item Value
gene id LOC122342953
gene name LOC107575420
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20907255 ~ 20915840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237179.1
AAGAGTGAGGAAGTAGGAGGGACTGCAGAAAAGAAAACCCACAAAAACATCCTgcagagagaagaaaaatgaagaaaacttTCTCCTAAGAATTGAATGTTTCAGAACTTCTGTTCAAGACACAGTTAACTGGAGAAACAAGGAACATCTGATTAATCGGGCTGTAAGTATGTGAAGGATGATGGCGTCTGTTAAAGAGCTGCTCGTAGATTCACTGAAGGAGCTGGTAGAAGCTGAACTGAAAGAGTTTCATTGGCGCTTAAATTGTGAGCATTTATCAAGGTCTGAATTGGAAAAGGCGGATAGATTTGACACAGTAGACAAgatgataaaatgttttggacCAGATGAAGCTGTGAAGGTTACAGTAGAGATGCTGAGAAAGATGAAGCAAAATTATCTGGCTGAACAGTTGGAGAAAAATTACAAGCAagctCAGACTGAGGGCAATATGAAGAAATCTGCTGCGGTTGGAGGTGATTCACTACATATCCGGGagctgcaaaacttttttgaatctcacaaaacaaacatgaagaataaagctaaatgtatttttgaaggaaacaaagaaaatgaagcacaaCTCAAGGCTGTTTACACAGATCTGTTCAACAGAGGAGATATGAAAGAGGTCAATCACGAACATGAGATTCTGAAGATTGATGATgcttttaagattaaaaaaacacaggacaaaccgatcaaatgcaatgatatatttactgaactGAGGAAAAACAGTCAGAAAAATACTGTGCTGACCAAAGGAGTCGCTGGCATaggaaaaactgtctctgtgcacaagttcatcctggactgggcaGAAGGAGAATCTAACCAGGATATtcactgtgtgtttctgcttccattcagagaaattaatttaatgacaaaTGAAGATTTCAGTCTCCATGAGTTTCTGCTGGAATTTTATCCTGACCTGGAGAACCTGGAGAAATCAAAGCTATATAAGGGATGTAAGctagcatttatatttgatggacttgatgagAGTCGGCTGCCTCTAAATTTTAGATGGAAATCAATGAAAACTACTGAGAAAAAAGCATCTGTAGATGTGCTCTTTACAAGTCTGGTCAAAGGAACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagattcctcCTCGGTATGTGGGTTTGTTTACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGAAGTACTTCAGAAAGAGAATCAAAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagCCACAGTACTTCAGGATATTCTCACTGAGAACAGTGAAGTGAAGATCAGCACAACactcactgaaatgtacattcacttcctgCTTATACAGATGGACATGAAGAACCAGAAATATGAAGAACAAGAAGAAAGAGAATTCATAGAACACTTAGAAGCAAACAgggaaattattttgaaattagcCAAGTTAGCATTTGAACagctaaaaaaggaaaacattgtgttctatAAGGATGATCTAAAAGAATGTGGTATTGATGCGAGTAAAGACATTGAGTTCACAGGAATGATTGCTGAGATCTTCAAAAGGGAACATGGAATTCATGGAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTtgctgcagtgcatgtgttCATCTGCTATCTGAACAAGAACATGCAGGagcttcagtttttctttgatgaGCCAGAAGAAAATATAACAATGGAGACGTTACTGCAGAAGGctattgaaaaaaacatgaacaataagAGAGGACATCTGGACCTGTTCCTACGGTTTTTGTTGGGCATTTCACTGAAATCCAGTCAACACCTGCTTAAAGGCCTGTTCCAACACAACGAAGACTCCACAGAGAGTCTCTCAAAAATAAGTGAATACattaaacaagaacaaaacaagcaCAATATCTCAGATGAAGCTCTAGTCAACCTATTCTACTGCTTACTTGAACTCAAGGATCATTCAATATATGAGGAAATCCAGAGTTACCTCAGTTCAGATGAACATCCAGAAAGAGATCTCTCATCTTCAATGTGCACAGTCCTGACCTACATACTGTTGATATCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCATCATCTTCAAATTCCGCTATACTCTTGTCAGCTGTGAAATGCTGCAGAAAAGCACTATTTGATGGCTGTGGTTTTAatgaaacatgctgtgaaactgtgtcttctgctctacaatcatcaaactctCATCTGATAGAGCTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGACTGAACATACTGAGgCTGAGTGGTTGTAATTTCACTTCTCAATCCTGTGAAAGTTTGTCTTTAGCTCTACAGTCCTCAAAATctgtcctgagagagctggatctgagtaacaatgaccttcAGGATTCTGGAGTTAAACTTCTTTCTGAAGGACTAAAGAGTTTAAACTCTAAGCTGGAGATACTGAGATTTTCCATCTGTAATCTCACCGCACTGTCTTGTGGGAGTTTGTCATCAGTTTTACAATcttcaaactctgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttcttTCTGATGAAATAAGGAGTCCAAACTCTAAGTTAGAGACACTAAGgttgtctggctgtatggtgactGAGAAAGgctgtgaatatatatttttagctctgagttcaaacccttcacacctgaaagagctggatctgagctacaatcacccaggagattcaggagtcaAGCTAATCTCagaaaaactggaggatccacACTGCTCACTGAACAAACTCAATGTGTATCATGGAGAGGAATCCAGGATTATAGCAGGACTGAAGAAATatGCCTGTTTTCTCACACTGGATGCAAACACAGCAAGCAATCATCTCCTTCTGTCTGAGGACAACAGAAAGGTGATGTGGGTGCCTCATTGTAATCAGCTATATCCGGATCATGCAGACAGATTTGATAATCCTCAGGTGTTTTGTCGAGAAAGAGTGTATGggcgctgttactgggagattGAGTGGAGTGGAGAAGTGTATATAGCAGTGTCATATAAAAGCATCAGAAAGAAGGGACGAAGTTATGAGTGTTGGTTTGGAGGTAccgatcagtcctggagtttgttcTGCAATTCTGTATATtactcattcagacacaataaCAAAGAGACTCATCtctctgtgaagcccatcaTCATCAGAAAAACAGAAGTGTTGAAGTTCCATAGAacaggagtgtatgtggataagagcgcaggaactctgtccttctacagcatCTCTGACACAATCACACAtatccacacagtccagaccacattcactcagacccTCTATCCTGGGTTTACTGTGTCTTATTTCGGATCACTGGAtctgtgttgatgaatcagaa

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237179.1 True 3569 mRNA 0.41 11 20907255 20915840

Neighbor

gene id symbol gene type direction distance location
LOC122343141 NA coding downstream 15580 20888926 ~ 20891675 (-)
LOC122342999 NA coding downstream 35561 20865561 ~ 20871694 (-)
LOC122342279 NA coding downstream 56722 20847521 ~ 20850533 (-)
LOC122342278 NA coding downstream 93234 20804594 ~ 20814021 (-)
LOC122342954 NA coding downstream 124750 20764794 ~ 20782505 (-)
LOC122342960 NA coding upstream 33903 20949743 ~ 20962523 (-)
LOC122342968 NA coding upstream 114603 21030443 ~ 21038399 (-)
LOC122342284 NA coding upstream 155532 21071372 ~ 21081090 (-)
LOC122342959 LOC107575420 coding upstream 315920 21231760 ~ 21247753 (-)
LOC122342288 LOC107667978,LOC107563545 coding upstream 334559 21250399 ~ 21276097 (-)
G30293 NA non-coding downstream 170095 20736146 ~ 20737160 (-)
G30286 NA non-coding downstream 229391 20676260 ~ 20677864 (-)
G30273 NA non-coding downstream 256423 20650106 ~ 20650832 (-)
G30272 LOC107561645,LOC107750396,LOC107727338,LOC107734660,LOC107575457,LOC107569100 non-coding downstream 261720 20644964 ~ 20645535 (-)
G30270 NA non-coding downstream 274748 20632235 ~ 20632507 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding upstream 56436 20972276 ~ 20974065 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding upstream 150074 21065914 ~ 21068188 (-)
G30343 NA non-coding upstream 201975 21117815 ~ 21126071 (-)
G30394 NA non-coding upstream 462742 21378582 ~ 21765825 (-)
G30406 NA non-coding upstream 576424 21492264 ~ 21492907 (-)
LOC122343123 NA other downstream 42849 20858423 ~ 20864406 (-)
G29906 NA other downstream 624855 20281106 ~ 20282400 (-)
G29902 NA other downstream 668701 20237137 ~ 20238554 (-)
LOC122343146 NA other downstream 897543 20000988 ~ 20009712 (-)
LOC122342243 NA other downstream 1569763 19333729 ~ 19337492 (-)
LOC122343098 NA other upstream 133017 21048857 ~ 21053725 (-)
LOC122343113 LOC107749046 other upstream 360382 21276222 ~ 21279043 (-)
LOC122343135 NA other upstream 411775 21327615 ~ 21336881 (-)
G30395 NA other upstream 467629 21383469 ~ 21386437 (-)
LOC122343153 NA other upstream 472013 21387853 ~ 21783591 (-)

Expression


Co-expression Network