LOC122342960


Basic Information

Item Value
gene id LOC122342960
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20949743 ~ 20962523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237199.1
GCAGCACAACCAGAACCCAGCTGCTTTTCTATAAAGAGTAACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTAAGCTCAGAGATGATGAGATTGGAGACCTGCACAAGGATTCTCAACAACCAATACATGATGAATTACAAAGGGTCAAAGGCCAAAACAAAACCAGTATGAAGAACAAGTATGAGAGCTTATTTGAGGGAATAAAACTTCAAGAGAATCAAACCCTTCTGAACAGAATCTACACACAACTTTACATTATAGAGGGAGAGAGCAAAGGAGTGAATGAGGAACATGAGGTTTTACAGATAGAGAAAGCAGCCAAAATACAAGACACTCCAATCTActgcaatgacatttttaaacacttatCTGAACCAGGatgtaaaaagaatgaaaataatataaagactgttcttactaaaggaatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagacttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctTGACTTTTATCCTGAACTTGAAGATCTGGACTCAAATATTTATGAGGAGTGtaaagttgtgttcatctttgatggtttggatgaaagcagaatttcactgatgttttcagatgtTCAGAAAGTTTGTGATGTGACTCAGACTTCATCACTGGGTTTGTTGATATCAAACCTGATGAAAGGAGATCTGCTttcctctgctctcatctggatcacctccagaccagcggcagccaatcagatccccaCCAAATACATCAGCCGTCTTACAGAAATTCAGGGATTCAATGACCttcagaaggaggaatattttAGGAAGAGAATCAGTGATGAGCATCAAGCAaacagaatcatctcacacatcagAAGGGCAAGAAGCCTCCACATTATGTGTCACATCcctgtcttctgctggatctcatccaCTGTGCTTCAGAAGCTCCTGGATGGGTCTGAGTGAGAAATccctcaaactctgactgaaatgtacattcacttcctgCTGATTCAGGTCAATAGGAGGAATCAGAAATATGAAGAGAAAGATCCAGAGAAAGTCTTGCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAACTTGCTTTTAAACAGCTGGCAAAGGGAAATGTTACATTCTACAAAGAGGACATGAGTGAGAGCAACATAGACATCACTGATGCAtcagtgtattctgggatttgTACTGAGATCTTTAAGGAGGAATCTGTCATTCATCAAAAGAAAGTCTACTGTTTCATACATTTGAGTTTTCAGGAGTTTCTAGCTGCTTTCTATGTGCTTTACTGTCATCTTCTAGAGAAAATGGAGCAATTGcagttgttttttataaatatacaaacatttaaggAAATCCCTTTGTGTCAGCTGCTAATATCAGCAGTTGATCAAACTCTTCAGAGTGAAAACGGACACCTAGATCTTTTTTTGCGATTCCTGCTGGGTGCCTCACTGGAGTCTaatcagagactcttacagGATCTACTGCCACACACAGTGAAAAGCTCAAAGGCAATCAGAGAAACTACACAGTAtattaaagagaaaatcaaAAGAGACGATTTTCAGAATGATATCTCAGCTGACAGATCCATCAATCTATTCCTCTGTCTTCTGGAAATAAATGATGAGACTCTGTACAGAGAGATTCAGGACTTTGTGAAATCAGACAAAAACTCAGAGAAGAAACTTTCTCCTGCTCACTGCTCAACAATAGCCTACATGATTCAGATGTCAGAGAAGGTGCTAGATGACTTTGATCTGAAGAAATACAACACATCGACTGTGGGTAGATGGAGACTGATACCTGCTATGATGAACTGCAAAAAAGCTCTATGCGACAGCTGTAGTCTCTCTGAACAGCACTGTGAAAGTTTGTCCACAGCTCTACAATCATCCCATTTGAGAGaactggacctgagtaacaatgacctgcaggatttaGGAGTGAAGCAGCTTTCTACTGGACTGAAAACTTCACATTGTCAACTGACTGTACTGAGATTGGCAGGTTGTAGACTGACTAGTCAGTGCTGTGAAAGTTTGTCATCAGTTCTACAATCATCAAAGTCCCATCTGAGAGAgatggacctgagtaacaacgacctgcaggattcaggagtgaagctaaTCTCTGCTGGACTGAAGAGTTGTCAATTTAACACACTGAGATTGGCAGGTTGTACATTGACTGGTCAGTGCTGTGAAAGCTTGTCTTTAGCTCTACAGTCATCAAACTCTCATCTGacagagctggacctgagtaacaatgaccttcaggattcaggagtgaaactGCTTTCCactggactgaagagtccacaCTGTCGACTGAACATACTAAGATTGCTCTCTTGTAATCTCACTGGTCAGTGCTGTGGAAGTTTGTCTTCATCACTGAAATCATCAAACACCAgtctgagagagctggacctgagtaacaatgatgTGCAGGATTCAGGAATTAAGATGCTCTCTGTAGGACTGAAGAATTCACACTGTCAACTGAACATACTGAGATTGTCTGGTtgtatggtgacagaggaaggTTGTCGTTATGTGTCTTCAGCACTGAGTTTAAACtcatcacacctgagagagctggatctgagctacaatcatccagGAGATGCAGGAGTAAAgatgctctctgaaaaactagAGGATCCAAACTGCTCACTGAACAAACTCAATGTGGATCATGGAGAAAAGTCCAGGATTACAGCCGGATTGCACAAATATGCCTGTGAtgtcacactggatccaaacacagcacacactcgtCTCAGACTGTCTAAGAAGAACAAAAAGGTGACATATGTGAGGGATCATCAGTtatatcctgatcatccagaaaGATAtgatgtgtgttttcaggttcTGTGTAAAGAGAGACTGtctggacgctgttactgggaggctAATTGGACTGGAGCTGCGGTAATATCAGTCACATATAAAGGAATTGGCAGGAAAGGACAGAGTCGTCATTGTATGTTTGGACTCAATAAAAAGTCCTGGAGTCTGAACTGCTCTGATAACAGATTCACTGTTTGTCACAACAATAATTCAACTGTCATTCACGTCCCTTCGCTCTCCTCTAATAaagtaggagtgtatgtggatgtgTCAGCTGGCATTCTAACCttttacagcatttctgacacacacaaactcacacacttacacacattcagTACAACATTCACAGAGTCTCTATATGTCGGATTTgggttttatcatttaaattccTCAGTGTCCGTGTCATGAGCAACAACAGACCATTTTTTTAGTCAATTTACTcacaaataatgtaattacCTGCAATGTTTGTTTGCGTGGTCTTTGTTAAAGGTCCAGAATTGCGTGTGATATCCCATTGTTCTGTGTATGTTATAAGTGttgaatgattaaatgattcA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05321 Inflammatory bowel disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237199.1 True 3536 mRNA 0.41 10 20949743 20962523

Neighbor

gene id symbol gene type direction distance location
LOC122342953 LOC107575420 coding downstream 33903 20907255 ~ 20915840 (-)
LOC122343141 NA coding downstream 58068 20888926 ~ 20891675 (-)
LOC122342999 NA coding downstream 78049 20865561 ~ 20871694 (-)
LOC122342279 NA coding downstream 99210 20847521 ~ 20850533 (-)
LOC122342278 NA coding downstream 135722 20804594 ~ 20814021 (-)
LOC122342968 NA coding upstream 67920 21030443 ~ 21038399 (-)
LOC122342284 NA coding upstream 108849 21071372 ~ 21081090 (-)
LOC122342959 LOC107575420 coding upstream 269237 21231760 ~ 21247753 (-)
LOC122342288 LOC107667978,LOC107563545 coding upstream 287876 21250399 ~ 21276097 (-)
LOC122342980 LOC107571898 coding upstream 319764 21282287 ~ 21288322 (-)
G30293 NA non-coding downstream 212583 20736146 ~ 20737160 (-)
G30286 NA non-coding downstream 271879 20676260 ~ 20677864 (-)
G30273 NA non-coding downstream 298911 20650106 ~ 20650832 (-)
G30272 LOC107561645,LOC107750396,LOC107727338,LOC107734660,LOC107575457,LOC107569100 non-coding downstream 304208 20644964 ~ 20645535 (-)
G30270 NA non-coding downstream 317236 20632235 ~ 20632507 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding upstream 9753 20972276 ~ 20974065 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding upstream 103391 21065914 ~ 21068188 (-)
G30343 NA non-coding upstream 155292 21117815 ~ 21126071 (-)
G30394 NA non-coding upstream 416059 21378582 ~ 21765825 (-)
G30406 NA non-coding upstream 529741 21492264 ~ 21492907 (-)
LOC122343123 NA other downstream 85337 20858423 ~ 20864406 (-)
G29906 NA other downstream 667343 20281106 ~ 20282400 (-)
G29902 NA other downstream 711189 20237137 ~ 20238554 (-)
LOC122343146 NA other downstream 940031 20000988 ~ 20009712 (-)
LOC122342243 NA other downstream 1612251 19333729 ~ 19337492 (-)
LOC122343098 NA other upstream 86334 21048857 ~ 21053725 (-)
LOC122343113 LOC107749046 other upstream 313699 21276222 ~ 21279043 (-)
LOC122343135 NA other upstream 365092 21327615 ~ 21336881 (-)
G30395 NA other upstream 420946 21383469 ~ 21386437 (-)
LOC122343153 NA other upstream 425330 21387853 ~ 21783591 (-)

Expression


Co-expression Network