LOC122342967 (LOC107569100,LOC107575457,LOC107679413,LOC107566978)


Basic Information

Item Value
gene id LOC122342967
gene name LOC107569100,LOC107575457,LOC107679413,LOC107566978
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21673720 ~ 21690532 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237208.1
AGTGAACCTCCTAGAAGGGTTTGGCATCATTCTGGGCCGAGGAATTTGGGGGTTATTTTGTGCGAGTAATGTGCGTTAACAACAGGACAGTCGTGAGTTGATGAAGAACGATGGCGTCTGTTAAAAAGCTGCTCTTGGACCAACTGATGGAGCTGGCAGAAGATGAACTGAAGAATTTTCATTGGCATTTAGTGAAATTTTATCAAAAGTCTGAATTGGAAAATGCAGATAGATGTGACACAGTAGATAAGATGGTGATGTGTTTTGGACCAGAAGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGGTGAATGAACACAAGCaagCTCAGACTGAGGACAATATGAAGACATCTGTCCCTGTTAGAGaGCTGCAAAATGTCTTGAaaactcacaaaaacaacatgaagatgaaggtaaaatacatttttgagggCAACAAAGAAACTGGCACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGctttcaagaacaaaaaaacactgaacaaaacaatcaaatgcaatgatatatttactgaactGAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAGGAGTCGCTGGCATTGGGAAAACTGTGTCTGTGcacaagttcatcctggactgggccGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTgattaaagagagagaggtcaGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGAAGGACCTGGAGAAATCAAAGTTTTATACAGAATATAAActtgtgtttatatttgatggacttgatgagAGTCGACTGCCTTTGAATTTTGAAAGTGATACAATGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTCTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTGGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAGGTGAAAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAAATTCAAAGATCAGAGTGTGTcctccagaatcatctcacacattaagACGTCTTGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCAAACAACAAGGAGAATGTTCAGAGCACttacttttaaatagaaagatGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAGGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGGGTGTTCAAGAGTTCCTtgctgcagtgcatgtgttcatctgttacctgaaaaaaaacaagcaagggcTTACGTTTTTCTTTGAGGATTCACAAACTACAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATTGCATGACTTAACAGAGAGAGCAATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCAGTGGAATCCAGTCAAAATCTGCTCAAaggcctgatcacacacactgaagacaCCACAGAGAGCATCAGAAATCTAAGTGCACACATTAAAGAATTACAACAACAGGACATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAGATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCATCTTCAATGTGCACAGTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAAAACTAGCAGACTACAGGAGACTCATTCCAGCtgtgagatgctgcagaaaagctctATTTGACAACTgtggttttgatgaaacatgctgtgaaaCAGTGTCTTTTGCTTTACGATCATCAAACCATCTGACAGAACTGAACCTGAGTAATAATCAACTGaaagattcaggagtgaagttgctttctgatggactgaagaatTCACACTGTCGACCGAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCAGTCCTGTGAAAGTTTATCTTCAACTCTACAATCATCAAACCATCTTACAGAGCTAAACCTGAGTGACAAccacctgcaggattcaggagtgaagctgctttctgatggactgaagaatTCACTCTGTCGACTGAACATACTGAGGCTGTGTGGGTGTCATCTCACTGCTCTGTCCTGTGAAAGTTTATCTTCAACTTTACAAtcatcaaactctgtcctgagagagctgcacctgagtaacaatgacctgcaggattcaggagtgctGGTTCTTTTGGATGGAatgaagagtccaaactctaAGCTGGAGATACTGAGattttccacatgtaatctcactgcacagtcttgtgggagtttgtcttcagttttacaatcctcaaactctgtcctgaaagaactggacctgagtaacaatgatctgcaggattcTGGAGTGAAGCTTCTTTCTGATGGACTCAATAGTCCAATGTCTAAGCTGGAGATACTAAGATTTTCcacatgtaatctcactgcacagtcttgtgatttgtcttcagttttacaatcctcaaactctgtcctgagagAACTGGATCTGAGCaacaatgatctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaAATCTCTAAACTGGAGATACTAAGgttgtctggctgtatggtgacagaggaaggctgtcgttatgtgtcttcagctctgaattcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtcaaactgctctctgaaaaactggaaGATCCAAACTGCTCTCTGAAAAAACTCAAGTATGTCACGCAGGAGATGTTTTTGGGATTTATTGTTTAACCCTTGTGCAGTCTTTTGAGaatattacatttagaatttttaaaaatcataggTTCACCAGAATGGTACAAAATTCTATTACCCTTATTGCACTTGT

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like

GO: NA

KEGG:

id description
K20865 NLRP12; NACHT, LRR and PYD domains-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237208.1 True 3378 mRNA 0.41 11 21673720 21690532

Neighbor

gene id symbol gene type direction distance location
LOC122343024 NA coding upstream 23542 21644319 ~ 21650178 (+)
LOC122343031 LOC107563545,LOC107564010 coding upstream 220858 21449517 ~ 21452862 (+)
LOC122342295 LOC107573707,LOC107575631,LOC107689603,LOC107741456,LOC107667978 coding upstream 224210 21447240 ~ 21449510 (+)
LOC122342293 NA coding upstream 273572 21398817 ~ 21400148 (+)
LOC122343117 NA coding upstream 294081 21377538 ~ 21379639 (+)
LOC122343144 NA coding downstream 50791 21741323 ~ 21742305 (+)
LOC122343035 NA coding downstream 118624 21809156 ~ 21814437 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding downstream 150649 21841181 ~ 21842230 (+)
LOC122343067 NA coding downstream 412786 22103318 ~ 22104932 (+)
LOC122343041 zbtb24,LOC107736039 coding downstream 414704 22105236 ~ 22107457 (+)
G30133 LOC107749047,LOC107571854,LOC107728228,LOC107669894 non-coding upstream 146709 21485712 ~ 21527011 (+)
G30132 NA non-coding upstream 151467 21479557 ~ 21522253 (+)
G30136 NA non-coding upstream 174206 21498864 ~ 21499514 (+)
G30134 NA non-coding upstream 175339 21496823 ~ 21498381 (+)
G30110 LOC107718524,LOC107563870 non-coding upstream 299183 21369422 ~ 21374537 (+)
G30130 NA non-coding downstream 58478 21749010 ~ 21811284 (+)
G30205 NA non-coding downstream 450812 22141344 ~ 22255433 (+)
G30206 NA non-coding downstream 472106 22162638 ~ 22240294 (+)
G30212 NA non-coding downstream 484423 22174955 ~ 22252519 (+)
G30226 NA non-coding downstream 559903 22250435 ~ 22251792 (+)
G30115 NA other upstream 31964 21639540 ~ 21641756 (+)
G30119 NA other upstream 43600 21388193 ~ 21630120 (+)
LOC122342286 LOC107578117 other upstream 499380 21169193 ~ 21174340 (+)
G30058 NA other upstream 530889 21118562 ~ 21142831 (+)
G29961 NA other upstream 966874 20696672 ~ 20706846 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 540938 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 606365 22296897 ~ 22305148 (+)
LOC122343019 LOC107705900 other downstream 971294 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 1087451 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 1438574 23129106 ~ 23130189 (+)

Expression


Co-expression Network