LOC122342973 (LOC107685875,LOC107749047,LOC107728228)


Basic Information

Item Value
gene id LOC122342973
gene name LOC107685875,LOC107749047,LOC107728228
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21517473 ~ 21528946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237212.1
GCAAGTGAAAGAAAGTTTGTGATGTTTACACTTGATCGTAGGAATACTTTTCTCACTTTTGAAAAGAAGATCATGAATCTTTTTCATTAGCTCATGTAGCAAGATAAGTGAACattaagggaaagcaaagacaTTTTCAGAAGTTGTCTAGAAACTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGGAGATCAAACTTTTCAAATCCatcatgaatgaaacacaaacatctggAGATGAAGATTATATTCCAGGCTGCAGttcagttcatcagaagagatcagaaacagagcccagctgtgtgtctgtgaagaGTGACTGGTCTATGGATCCGCCACTGTTGTTGAAGAGTGAAGATTCACAGCCTGGACTCAGTTCAattcatcagaagagatcagaaacagagtccagctgtgtgtctatgaagagaGAGACATCTTTGATTCAGTCTTTAGATTTTAAGAGACGAGATATACGGCCTGTTCTCAGTCATGAAGTCCTCAACACATTTAGATCAAATCTGCTGAAGAAGTTTAAGTGTCTGTGTGAGGGAACAGCGACGCAGAGAAACACAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGGGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGAGAATCAGGACATCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACATTCAGTCTTTCAGATCTTCTTCACGTCTTTTTCCCTGAaactaaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCATCTGTCTCTGGACTTTAAGAGCAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatcttcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCAGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCTTCATCATGTGTTACATCCCaatcttctgctggatctccgCCACTGTTCTTGAGAAGATCTTGAGTCGAGCAAAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatcctTCAGACCAATATCAAACATGAGAAAGATTATGAGAAGAAGGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAAGGGAAAGTCTTCTGCTTCGTTCATCTGACCCTTCAGGAACATCTAGCAGCTCTATATGTGCACCTCTCCTTAACAATAAAGAAGACAAATGTGTTTGACCAAACCATACAAAGTTCTTTCTCTAAAGCCTTAAACCGGAGGAGGTCATTATCTAAGCTCCATCAGAGAGCTGTGGATGACGCTCTACAGAGTAAGAATGGACACCTGGATCTTTTCTTGCGATTTCTTCTGGGTCTATCAGTGGAGTCCAATCATACTCTCTTAAGAAATCTACTGACCCAGACAGGAAGCTGCTCCTACAACAAAAAGGAAACAGTTCAGTTCATCAAACACAAGATCAGGAAGAATCAGAGAAATTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggTGATTATTCACTGATGCAGGAGATCCAGGGTTATCTGAAATATGGAGAAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAAAGGTTTATTGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTTTGGTCAAAGAATCCAGATCAGTTTGGCTATGTGAATGCAATCTCACTGCTCAGTCTTGCggaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactgtcatctggaaattctgagATTGTCTGGCTGTTTAGTGACAGAGaaaggctgtggttatgtgtcttcagctctgacttcaaacccctcatacctgagagagctggatctgagctacaatcatcctggagattcaggTGTCAAGCTactctctgaaaaactggaggacTCAACTTGCTCATTGGACAAACTAAAtgTGGATCATGGAGGAGAATCCAAGATCAAAGCCGGAATTAAGAAATatgagtattttttcacattggatccaaacacagcaaacactcaactcattctgtctgaggagaacagaaaggtgatgtgtgtgtctcagtctcagctgtatcctgatcatccaggcAGATTTGATGAAGTGtatcaggtgttgtgtagacagagagtgtgtggacgctgttactgggagactgagtggagTGGACGTGTGTTTATATCATtgtcatataagaacatcagcaggaagggacCGGGTGAAGAGTGTTGGTTTGGatctaatgatcagtcctggagtttgatctGCTCTCCTCACAGAtactcattcagacacaataaGATAGAGACTGATCTCTCTATGAAGCCCATCATCAGCAGAAGAAGAACAGAGGTGTATGAAGATATCTACAGAGTAGGAGTTtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTTGGGTTTATTCtggatcatcagtgaaactgtgttgattctacccagaatgctttgagctgcatgatgaaTCAGTAACAGTGAGATGTTATGAGTCTCTTAAAGACACTAATACTGCAGCTCAACttctataaaaacagaaatataagacttaataattaatctaaaaaatagatataaaagaataaatgtgtcagaaatagaaagatctgtgtgtgtgtgtgtgtgtgtgtagtgtctcatcaatcatttgttttatttctgtttcaatgtaaaaatgtcacaaaCATAATTGATGAAGAATATGTCATTGATTTCTCTATTGTTTCTGCACTGATAAATCAACTTGATCAGGTTTTAATTGATGTGAGGAATCAATATTCATAATACAAACAAGAATGAAATGAGCTtctgattttataaaatatgacatttatcacagcatttaataaaacattgtaacAACAGTAAATTTGTATTatctttcaataaataaaataaaatgaatttatttgaaaatatttttttctgagttTTGCAGTTAATGTAATCACAGTGTAATGAACCacgcctctgtggctctctccgacggcCACCGGAGGGAACCCTGCCCAGAATATTAGTCCCCggaactacatttcccatcatgcctctTTCCAGCTCtaattacctgcccaggtgtaccTTGTTAAGACTGCTATTTAAGCTGCAACCAGCCAGAACTCTTTGcgaagtcttatccttgctcTGGCTGATAATTTTAAGTGTTTGCACTATCGTTGGTTTCCTGTGTTTGACCTTGTTCTGTGTTGTCGTTTGCTGCCTACCCATTGACCTATTGCCTTTACCTCGACTCTGACC

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237212.1 True 4082 mRNA 0.42 9 21517473 21528946

Neighbor

gene id symbol gene type direction distance location
LOC122342296 NA coding downstream 22244 21487205 ~ 21495229 (-)
LOC122342952 LOC107575457,LOC107561645 coding downstream 24572 20568379 ~ 21492901 (-)
LOC122343027 LOC107685875,LOC107749047,LOC107671223,LOC107570416,LOC107728228,LOC107655115 coding downstream 30268 21484781 ~ 21487205 (-)
LOC122342292 NA coding downstream 134282 21381792 ~ 21383191 (-)
LOC122343094 NA coding downstream 195378 21318814 ~ 21322095 (-)
LOC122343039 NA coding upstream 8376 21537322 ~ 21542289 (-)
LOC122342299 NA coding upstream 100534 21629480 ~ 21630158 (-)
LOC122343099 NA coding upstream 122418 21651364 ~ 21653997 (-)
LOC122343036 LOC107563870,LOC107718524 coding upstream 126956 21655902 ~ 21662833 (-)
LOC122342300 LOC107575420,LOC107563545,LOC107575457,LOC107741456 coding upstream 185733 21714679 ~ 21736541 (-)
G30408 NA non-coding downstream 17475 21499638 ~ 21499998 (-)
G30406 NA non-coding downstream 24566 21492264 ~ 21492907 (-)
G30343 NA non-coding downstream 391402 21117815 ~ 21126071 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding downstream 449285 21065914 ~ 21068188 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding downstream 543408 20972276 ~ 20974065 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding upstream 139864 21668810 ~ 21673424 (-)
G30425 NA non-coding upstream 144777 21673723 ~ 21676131 (-)
G30423 LOC107575420,LOC107667978,LOC107563545 non-coding upstream 147930 21676876 ~ 21809618 (-)
G30465 NA non-coding upstream 751726 22280672 ~ 22281189 (-)
G30499 NA non-coding upstream 830271 22359217 ~ 22421953 (-)
G30395 NA other downstream 131036 21383469 ~ 21386437 (-)
LOC122343135 NA other downstream 180592 21327615 ~ 21336881 (-)
LOC122343113 LOC107749046 other downstream 238430 21276222 ~ 21279043 (-)
LOC122343098 NA other downstream 463748 21048857 ~ 21053725 (-)
LOC122343123 NA other downstream 653067 20858423 ~ 20864406 (-)
G30396 NA other upstream 100671 21629617 ~ 21776806 (-)
G30372 NA other upstream 208145 21737091 ~ 21740330 (-)
LOC122342302 NA other upstream 240178 21769124 ~ 21772399 (-)
G30450 NA other upstream 599508 22128454 ~ 22245160 (-)
G30457 NA other upstream 687089 22216035 ~ 22216470 (-)

Expression


Co-expression Network