LOC122342980 (LOC107571898)


Basic Information

Item Value
gene id LOC122342980
gene name LOC107571898
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21282287 ~ 21288322 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237236.1
AACAGAGATCAGACTCTTTAGAAACCTGTTCTGTCTCTGTGAAGAGTAACATGTCTATGTCTCAACCCAATGACCTCTGAACTTAGGGTAGATGACAAACATGTAGCCTTTCTGTGCCGACCAGTGGATGATCAAATACACAGAGTTAAACACCagcacaaaaacagcatgaaaaaaaggtttgagAGATTATTTGAGGTAATCAAATTGCAAGAAAATGAAACCCTCTTGAACAGGATCTACACACAGCTCGACATCATAGAAGGAGAGAGTGAAGGAGTGAATGAGGAACATGAGGttttacagatggagaaaacagccaaaacaaaacactcacaagACACTTCAATTTACTGCAATGACATCTTTAAAGCCTCGTCTGAAACAGGATGTGAGGAGAAGGACCAGATTaagactgttcttactaaaggcatTGCTGGAATCGGGAAAaccgtctctgtgcagaagttcattctggactgggcagagggaaaagccaatcaggatTTGGACttcatgtttgtgcttccatttcgagagctgaacttgatccgagatcatcagtacagtcttcacagacttctgctTGACTTTTATCCTGAATTACAAAATCTGGACTTAAAGGTTTATGAGGAGTGTAAGattgtgttcatatttgatggtctggatgaaagcagaattaCACTGATGTTTTCCGATTTTCAGAAAGTTTGTGATGTGCCTGAGACTTCATCAGTAAGTATGTTGATGTCAAAACTCATGAAAGGAGAGCttcttccctctgctctcatctggatcacctcaaGACCagcaacagccaatcagatcccaTCCAAATACATCAACCGTCTGACAGAAATTGATGGATTCAGTGACCttcagaaggaggaatatttcaggaagagAATCAGTGATGAGCATCAAGCCAGCATaatcatctcacacatcagAAGAGTAACAAGCCTtcacatcatgtgccacatacccgtcttctgctggatctcatccaTTGTGCTTCAAAATGCAGAAATGcctcaaactctgactgaaatgtacatccacTTCCTGCTGATTCAGATCAACATGAGGAACCAGAAGTATCAAGAGAGAGATTCAAGGAAACTCCTGCAGACCAACAGAAAAGTGATTATGAAACTTGCTGAAGTGGCTTTCAATCAGCTGATGAAGGGCAATGTGCTGTTCTATGAGGAGGACCTAACTGAAAGTGGCATAGATGTAACTGAGGCCTCAGTGTATTCTGGGGTTTGCACTGAAATTTTTAAGGAGAATTGGGTGTTACATCAGAGGAAAGTCTACAGTTTCATTCATCTGACTGTTCAGGAGTTTCTAGCAGCTttttatgtgttcattttttatgtaagtacgATAGTGGATGGACTaaaaaattttgtttcattacaaAATTTACTTAAAGGTGCAGTAGATAAAACTGGACACCTGGATCATCTCTTGTGTTTCCTGTTGGGTGTCTCACTGGAGTCCAATCAGAGACTTTTAAAGGATCTACTGATACACACAGTAAACAGCTCAGAGAGCATCAGGATAACCCCACAATACATTACAGAGAAGATCAAAGATGGACAGCAACTTTCCACTGAAAAATCCATAAATTTATTTCACTGTATGCTTGAAGTAAAAGATCACACTCTGTCCAGAGAGATTCAAGAGTTTGTAAAATCGGACAAACAGTTAGAGAAAAAGCTCTCTCCTGCTCACTGCTCAACAATTGCCTACATGTTTCAGATGTCAGAGGAACCGTTCGATGAGTTGGAcctcaaaaaatacaatacatcaGATGAAGGAAGAAGAAGATTTATACCAGCTTTATTCAACTGCACAAAAGCTTATTTGGCTGACTGTAGTATTACTGCTCAGGAATGTGAAATTGTGTCTTCAGCTCTACAGTTCTCAAACTCTGTCCTAAGAGAGCTGGATCTTGgtaacaatgatctgcaggattcaggagtgaagctgctttctgaagGATTGAAGAGTTCAAACTTTCAACTGGAGATACTGAGGTTGTCAGGTtgtatggtgacagaggaaggctgtggctatttgtcttcagctctgacttcaaacccctcacatctgagagagctggatctgagctacaatcatccagGACCATCAGGGGTCCAGCTGCTTCAACACAAACTGGAGGATCCAGACTGTAAACTGCAGATACTCAATTTGGATCACGGACACCCTTGCAGAATTACTCCAACACTGAGAAAATATGCCTGTGATCTCACACTtgatccaaacacagcaaacgCTTACATCATTCTGATTGATGAGAACCGAAAGGCAACATACGCGAAAAAGCCGCAAccatatcctgatcatccagagagATTTGTTGGTGGTGAGCGGGTTCTGTGCCGAGAGCGTCTGACTGGACGCTGCTACTGGGAGGTTGAATGGAGCGGTTGGGGTCATGCAGCAGTGACATATAAAGGAATTGGGAGAAAGGGAGGCAGTGACTTTAGATTTGGATACAACGACAAATCCTGGAGTCTGGATTACTCTGATAACAAATTCACTGTCTGGCACAATAAAAAACGAAAGGACTTACCACTCACTTCATCCACGTTTGatagagtaggagtgtatgtggatgtgTCAGCTGgcactctgtccttctacaccgtctctgacacacacacactcacacacttacacacatacaacacCACATTCACTGAACCCCTCTACGCCGGATTTAGAGTATTTGAAACCTCATTGACTCTGTGTCAGATTCAAAACGAAGAGAAGGTTAACTAACTGATCGTTTGAAAACGGGTAAGagtgaaaagtaaaaaactTTCCAGTGTTCATTATTTCCAGTATTCTGAAGTGAAAATCATCATAACTCCCTAATAACCACGGATGTCTTTGTAAGCATTTGAGATGTACGTAAGGTTTTAGATAGTAATGCCTTAAGATCTTTCTGAAGAAACTAATTGTTTGGACccgtattctaaagtgaagatcatgGTAATGATTTAAATCTAGCAAAGTGAACTACTAACCAGAGCCTTACAAAAACCACAAAGGTTTACAATGATTTCAGTAATTACTAGAGAGTTATGATTATCTTTGCTTTAGAATATTAATCCAAAAAATAGTAATTCCTTTAGAAGCATCTAGTAACTACTATTTAATATGAAACACACAAAAGCTTACAATGatttcataatcataatcttCACTTCACTACTGATCCTAATAATTATTAGTTCTCTCTGAAGCAAGTCATTGCTAGTGGGTTACCATGACCTTCCTTTTAGAATTAATTGTACATCATGTagtattcatattaattatgaagctgtatacagtaattattaatagtttttggGGAGGTATAAAGCAAAAATAGTTGATTAGCTAATAGTGAACTACCACATTCGCTTATTTCATTATGTGCAGTAATTGCTCTACAATTAACTAAGCGTTAATTATGAGTCACAAATAACGTTGtcattatgttttaaacagGGCCACTTTGTGGAATAAAGTTGAATTGCACTCACTGATTCTTCAAACATGtaattgttgtttaatgttaaattttTCCTGCTGTTGTGGAGCAGTCCAGTGTCATGACAAAGAAGGCTGATCCTGATTGGTGTGCATCTTGTGTGCATTCCAagtgctgattggctgattcaCAGATAGAACCTTTATAGAACCAAGTTTGAGTTGGTTCAGCCAAACACTAATCATCAATTCTGTCAGGGTATTTAAACTTTTGAgctaaattgtaaaattataataatgctaTGTGATAATTACTATAATTACAACACCTTTGTTTAATGAAACATTGTGTCTCAACATACTATACCGATACTGATGaggcatgacaaaaaaaaaaaaaaatacatatacatatatacatacagggTGTAAATTGCAATGAACTCTGGAGAGTGTCAGCTATTGATTATTAAGGGAATTTGCAAACGTCGTACtgattttatacaataaatatcaCATGACTGACATTGTCTGACTTGTAGTAATAACCTATTTATAAAGACAGTCACTTGCTTCACTCCTAAATGAATCAACCATTCGAATGATTCAATGCAATGAAAGAATAAGCA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237236.1 True 4139 mRNA 0.39 7 21282287 21288322

Neighbor

gene id symbol gene type direction distance location
LOC122342288 LOC107667978,LOC107563545 coding downstream 6190 21250399 ~ 21276097 (-)
LOC122342959 LOC107575420 coding downstream 34534 21231760 ~ 21247753 (-)
LOC122342284 NA coding downstream 201197 21071372 ~ 21081090 (-)
LOC122342968 NA coding downstream 243888 21030443 ~ 21038399 (-)
LOC122342960 NA coding downstream 319764 20949743 ~ 20962523 (-)
LOC122342290 LOC107561645,LOC107741456 coding upstream 21210 21309532 ~ 21313970 (-)
LOC122343094 NA coding upstream 30492 21318814 ~ 21322095 (-)
LOC122342292 NA coding upstream 93470 21381792 ~ 21383191 (-)
LOC122343027 LOC107685875,LOC107749047,LOC107671223,LOC107570416,LOC107728228,LOC107655115 coding upstream 196459 21484781 ~ 21487205 (-)
LOC122342296 NA coding upstream 198883 21487205 ~ 21495229 (-)
G30343 NA non-coding downstream 156216 21117815 ~ 21126071 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding downstream 214099 21065914 ~ 21068188 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding downstream 308222 20972276 ~ 20974065 (-)
G30293 NA non-coding downstream 545127 20736146 ~ 20737160 (-)
G30286 NA non-coding downstream 604423 20676260 ~ 20677864 (-)
G30394 NA non-coding upstream 90260 21378582 ~ 21765825 (-)
G30406 NA non-coding upstream 203942 21492264 ~ 21492907 (-)
G30408 NA non-coding upstream 211316 21499638 ~ 21499998 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding upstream 380488 21668810 ~ 21673424 (-)
G30425 NA non-coding upstream 385401 21673723 ~ 21676131 (-)
LOC122343113 LOC107749046 other downstream 3244 21276222 ~ 21279043 (-)
LOC122343098 NA other downstream 228562 21048857 ~ 21053725 (-)
LOC122343123 NA other downstream 417881 20858423 ~ 20864406 (-)
G29906 NA other downstream 999887 20281106 ~ 20282400 (-)
G29902 NA other downstream 1043733 20237137 ~ 20238554 (-)
LOC122343135 NA other upstream 39293 21327615 ~ 21336881 (-)
G30395 NA other upstream 95147 21383469 ~ 21386437 (-)
LOC122343153 NA other upstream 99531 21387853 ~ 21783591 (-)
G30396 NA other upstream 341295 21629617 ~ 21776806 (-)
G30372 NA other upstream 448769 21737091 ~ 21740330 (-)

Expression


Co-expression Network