ddx54 (ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149)


Basic Information

Item Value
gene id ddx54
gene name ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17984993 ~ 17997658 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237237.1
TCTGACGTCATCTCTGTGCGCAGGACCGTCTTCTTCACACGTGTTTCCGAACGTCTCCGGTGTTTTCATCTCGCTTTTCTTGGATTAAACAGCGACGTTTCCCGACAGCAGCGGGGTTTTAGCGATGGCGCAAAGGAAGAAGAGGCtgctgaggaggaagaagagagaTCACGAGCTCCAGTCCGACGATGAAGAGTTTGAAGTGACCACACGAGTCAAAGATGACCAGGACACATCCAGCAGAAGACTGCCTCGGTTCCCAGCTTCGTCCGAGTGTGTTTCTGACGTGGAGCTGGACACCAGAGAGCTCGTCCGAGCCcagaacaagaagaagaagaagtctgGAGGCTTTCAGTCCATGGGTCTCAGTTATCCGGTGTATAAAGGAGTCATGAAGAAGGGCTATAAAGTTCCCACACCCATCCAGAGGAAGACGATCCCGGTGATCCTGGACGGGAAGGATGTGGTGGCCATGGCTCGGACCGGCAGCGGGAAGACGGCCGCGTTCCTCGTGCCCATGTTCGAGAAGCTGAAGGCCCCGCAGGCACAGACAGGGGCCCGAGCTCTGGTCCTCACACCCACCAGAGAACTCGCCCTGCAGACCATGAAGTTCACCAAAGAGctgGGGAAGTTCACGGGTCTGAAAACAGCGCTGGTTCTCGGAGGAGACAGCATGGACGACCAGTTTGCTGCTCTTCACGAGAATCCAGACATCATCATCGGTACTCCTGGTCGTCTGATGCATGTTATTCAGGAGATGAACCTGAAGCTGCAAGCCGTGGAGTACGTGGTGTTCGATGAAGCTGACAGGCTGTTTGAAATGGGTTTTGCGGAGCAGCTTCAGGAGATCATCAGACGTCTTCCAGACACGAGGCAGACGCTGCTGTTCTCTGCCACGCTGCCCAAAATGATCGTGGAGTTCGCCAGAGCCGGCCTCACGGAGCCGGTGCTCATTCGTCTGGATGTGGACACGAAACTGAGCGACCAGCTGAAGCTTTCCTTTTTCCACCTGCGTTTGGATGATAAACCGGCTCTTCTGCTGCATCTGCTGAGAAACGTGGTGAAGCCTCAGGAGCAGACGGTGGTGTTCGTAGCCACCAAACATCACGTGGAGTATCTCAAAGAGcTCCTAACAGTCGAGGGCATTGAGTGTGCCTACATCTACAGCGCTCTGGACCAGACGGCCCGTAAGATCAACATCGGCCGCTTTGTGCACCGCAAGGCCATGGTGCTGCTGGTGACGGACGTGGCGGCCCGTGGCATTGACATCCCGCTGCTGGACAACGTCATCAACTACAACTTCCCTTCCAAGGCTAAGCTGTTCCTGCACAGAGTCGGTCGTGTGGCTCGCGCCGGCAGAGGAGGAGCTGCCTTCAGTCTGGTGTGTCCCGATGAAGTGCCTTTCCTCTACGACCTCCATCTGTTCCTGGGTCGACCGGTTCAGCTCGCCCTCCTCGAACACGCGCCAGATGCTGACGGCGTCTTGGGCCGAGTTCCTCAGAGCGTCCTGGACGATGAAGAGTCTCAGCTGCTGACGGCTCACGAGAACTCCCTGGATCTCCAGAACCTCCGGCGCGTCTCTGAGAACGCTTACAAGCAGTACCTGAAGTCTCGGCCGAACCCCTCCGCCGAGTCCATCAAACGTGCCAAGAACACCGACCTGTCCTGCATGGCCGTTCATCCTCTGCTGGGGTCCGGACTGGAGCCGATGGAGCTGGACCGGCTGCTGATGGTGGACTCCATCAAGGGCTACAAGTCCAAATCTacTATCTTTGAAATCAACTCCAACAACAAGAGCAGCGCCAGCGAGGTGATGCGAGCCAAACGCTCCCGAGACGATCGGCTGCTCGACAAGTTTTCTAAAGCGCGAGCGGAGCGGTTAGTCGAGTCTGCGGTCCCCGTCGTAACCAGAACCGAACCTCAGCCCGAGGAGGACGACGAGCTTCAGACTGTGTTCTCAGAGGTGGTTGGAGGAAAAAGACGAAAGCAAGGTGATGAAGCGGACAGACCAAAGAgcaaaaaaatcagaaaatctGGAAAAGATGAGGAGTTTTACATCCCATACAGACCTAAAGACTTCAACTCTGAGCGCGGgctcAGTCTCGGCCGTGACGGAGGCTCTTTCGAGCAGCAGGCCTCTACTGCCGTCCTGGACCTGATGGGAGACGAGAGCAGCACGTTAAACCAGCACAAGAGTCTGATGAAATGGGACCGCAAGAGGAAGCGCTTCGTCCGAGACACGGGCAAAGAGGACAAGAACAAGAAGATCAGGACAGAAAGCGGGCAGGTGGTCAAcagcaaaaagaagaagagcttTTATGAAGAATGGAAGAAGAAGTATAAGATCGACGACAGAGACTCGGATGAAGAAACCGGAGGAGCAACGAGAGGCAGGAGCTTCGGAGGCCGCCGAGGTCGAGGAGGAGCTCCGGCGCAGCAGCGGAGCGGGTCAGGCGTCCGATCTGAGCTGAAGAACCGCGATCAGATCCTCAAGCAGCGCAAACGCAAAGCCAAGCAGCAGTTCCTGCAGAGCGGCGGCATGAAGAAGCTCCGGGCCAAAGGACGCCAGCGTCTGCAGGAAGTCATGAAATCCGGCTTCGGTCGCGGCGGCTTCAAGAAAGGAAAGATGAGGAagaaactttaactttaaatgaGGAACGACGCGCACCTGCAATCAGTGACGCAGAAAACCGGATGGACCTGTTATATACGGCTAGAACGAGTGAATGTTTGATCTGTGCGTCTCTTAAACTgatttaaagggatggttcaggTTCAACTGAAGCTCTGCTGGCGGCTGGGAGCTTGTGGAAATACATTAtcacaaaaaatgatttactgtgtttttgtttaataaacgATATTTAGAGTAAGACACTTTCAGTGGAAGTCTATGGGCCAGGCAGTGCATGCACCGGTTCATTTGGCCTAGTCTGCAAAGCTTTATCTGGTTCTTAAAGGTCTCTTTTGCACGACATTCACAAAACTCCTTTAAAAAGGTAAGACTAATATTTCTGAACTGATTAATTACTAGAGTTTTGTGGAGCTGGGCCTGGGGTCAAACTCAActtgatgggtttttttgttcaaattaatgttaaatattaatgtaaatgttctaGTTGACTGTTAAAGCGCCCTATGAAGTAGACTTGCAATCCAGGAGCAAACATGTTCACTTTTAAGGGCACTGCAGGCgctctgttttttatttatacattgaAGTTTTGATCTGTTGAATTATTTAGTAGCACACCGAACGATTGGTGGTGCATCTAATTGTAAAGACTTCTAagaaacaaaaagcacaaaataagaAACACGTTGCATTCACGaccaaataaataacacttcaTTTCTCCAGAGTAAGTGAACAGTCAGGGTCAGATCGTGTGTTTCAGTCTATTATTGTTCTCTGTAAACATGAACAAAGTGTATTaagtaaaaacgtttttaagaaaatatgaaaa

Function

symbol description
ddx54 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DDX54 (DEAD-box helicase 54).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX54

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237237.1 True 3470 mRNA 0.52 20 17984993 17997658

Neighbor

gene id symbol gene type direction distance location
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding upstream 21474 17939684 ~ 17963519 (+)
exosc2 exosc2,exos2 coding upstream 47077 17933305 ~ 17937916 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding upstream 69399 17912439 ~ 17915594 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding upstream 82076 17901441 ~ 17902917 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding upstream 173530 17805840 ~ 17811463 (+)
lman2la lman2l,lman2la,LOC107660366,LOC107565653,LOC102299173 coding downstream 205077 18202735 ~ 18210893 (+)
LOC122343129 LOC107565648,LOC107660365,LOC106563294,LOC108274068,LOC107733731 coding downstream 221058 18218716 ~ 18222320 (+)
rab21 rab21,zgc:154045,LOC107687573,LOC107690748,LOC106609839 coding downstream 549873 18547531 ~ 18554389 (+)
trim24 trim24,LOC107709964,LOC107687572,LOC107747644,LOC107562152,LOC107690747 coding downstream 558911 18556569 ~ 18565366 (+)
LOC122343002 NA coding downstream 621893 18619551 ~ 18627271 (+)
G29320 NA non-coding upstream 19242 17884328 ~ 17965751 (+)
G29364 NA non-coding upstream 52589 17931884 ~ 17932404 (+)
G29318 LOC107745315,LOC107597934 non-coding upstream 62104 17916054 ~ 17922889 (+)
G29329 NA non-coding upstream 129629 17854461 ~ 17855364 (+)
G29334 NA non-coding upstream 160728 17823250 ~ 17824265 (+)
G29476 NA non-coding downstream 1939 17999597 ~ 18002479 (+)
G29484 tbx3a,LOC107742157,LOC107597930,LOC107687999,LOC107728866 non-coding downstream 61677 18059335 ~ 18060916 (+)
G29544 NA non-coding downstream 437985 18435643 ~ 18460595 (+)
G29548 NA non-coding downstream 443973 18441631 ~ 18465837 (+)
LOC122343196 NA non-coding downstream 593789 18591447 ~ 18594116 (+)
atp5mj NA other upstream 944163 17038419 ~ 17040830 (+)
G28982 NA other upstream 1510612 16473898 ~ 16474381 (+)
G28899 NA other upstream 1999267 15985219 ~ 15985726 (+)
G28891 NA other upstream 2143138 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2329715 15565499 ~ 15655278 (+)
G29526 NA other downstream 302757 18300415 ~ 18301189 (+)
G29545 NA other downstream 438802 18436460 ~ 18461317 (+)
G29642 NA other downstream 885521 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1292562 19290220 ~ 19342911 (+)
G29835 NA other downstream 1733604 19731262 ~ 19786128 (+)

Expression


Co-expression Network