LOC122342986 (LOC107563545,LOC107667978,LOC107741456)


Basic Information

Item Value
gene id LOC122342986
gene name LOC107563545,LOC107667978,LOC107741456
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21182237 ~ 21186135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237243.1
ctaaaactaaaaatagacaTAAGCCACATACAATGCATGCCAAGAGTGAGGCCCTCTAGAGAACGCCTGAGAATTTACTCCTTATATTATTCTCCTGCATTTCCTCATTCCTCTTTCCAACCGTGACCACACACCCATAATACTGATTTGGATTATTACAGTGTTTTCTGTAGTTGATGACACCATGAATTTACAAGGGGGAAATTGAATCTGCATAAAAAGCCACCAAACacagttgcatttatttacttattagtaaataatattACTTCATGAGATATTGAAACATATGGTTTTTAAAGTGTCACAAACTGTACCGATTCTAAACTTACAAGTATCAAACAGCACTGAGAGTACATTAGTCTTTTGCTAACACAACTCAAAGCAATCATATCAGCTTGGCATAAACCAGATTATTCATATGTTTATTCACAGCTTAATTAGCCAAATCGGATTTGAGCATCTAGGTTCACATGTTAAGAGCGGAAgttcagatgttttgtttttattgaccTGCAGCCATGAACCGGTGAAGGATGATGGCGTCTTTTAAAGAGTTGCTTGTGGACTCCCTGAGGGAGCTGGTAGAAGTTGAACTGAAGGAGTTTCATTGGCGCTTAAGGAATGCATATCATATATCAAAGGCTGAAATGGAGAAGGCAGATATATTTGACACAGTAGATAAGATGGTGCTGACATTTGGACCAGAAGAAGCTGTGAAAATCATGGTAGACATCCTGAAAAAGATGAAGCTAAATGATCTGGCTGAACAGTTGGAGAATGAACACAAGCaagctcAGGCTAAGAGCAATATGAATATATCTGTTGCTGTTGGAGAGCCgaaaaactgttttgaaactcacaaaacaaacatgaagaagaaagtagaatatatttttgagggtgacaaagaaaataaagcacaactcaaggctgtttacacagatctgttcatcacagaggGAGATATGAAAGATGTCAAACATGAGCATGAGATTCTGAAGATTGATGATGCTTTCAAgagcaaaaaaacactgaacaaaacaatcaaatgcaatgatatatttacCGAACTGAGTAAAAACAATGAGAAAAAGATTGTTCTCACCAAAggagtcgctggcattggaaaaactgtctctgtgcacaagtttatcctggactgggcagaagaaaaaaacaatcaagATATACACTGTGTGTTCCTGCTTCAATTTAGAGAGATCAATgtgattaaagaaaaagaagtcaATCTCCATGAGTTTCTGCTGAAATTTTATCCTGAACTGAATGACTTGGAGAAATCAAAGCTATATAAGGAATGTAAGctagcatttatatttgatggactTGATGAAAGTCGACTgaaatttaactttaaaagtaaaacattggAGACTGTTGAGGAAAGAGCATCTGTAGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGTTTGTTTACAGAGGTGCAAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGGGCCTGTcctccagaatcatctcacacattaagACGTCTCGTAGTCTCTACATAATGTGCCACAttcctgtgttctgctggatcacagCCACAGTACTTCAGGATATTCTCTCTGAGAACAACGAAAAGAACATCAGCACAACactcactgaaatgtacattcacttcctgCGGATACAGATGAACATAAAGAGTCAGAAATATGATGAACTAGAAGAAAGAGAATGTTCAGAAcacttacaattaaataaagagaTGATTTTGAAGTTAGCCAAGTTGGCGTTTGAACAGTTGAAGAAGGATAACATGGTGTTCTATGAAAAAGATCTGCAAGAATGTGGAATTTATGTGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCTTTAGGAAGGAAGTTGGACTTTATAAgagaaaggtttatttttttgtacatctaAGTGTTCAGGAGTTCCTCGCTGCATTGCATGTGTTTATCTGTTACCTGAACAAGAACAAGCAAcagcttcagtttttctttgagGGCTCACAAAGTAAAGTCAtaaaaaatcttacatttcGTTTTAGAAAGGTCAAATTGCATGACTTAACAAAGAAAGCCACTGATAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTTTTCCTGCGGTTTCTGATAGGAATTTCTCTAGAATCCAGTCAAAACCTGCTCAAaggcctgatcacacacactgaagacaCCACAGAGAGCATCAGAAAAgtaaatgcacacataaaaaaattacaaaaaattgaCATGTCAGGCGAAGCTTcagtaaatttattttactgctTACTTGAGCTCAAAGATAATACGTTATATGAGGAGATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCATCTTCAATGTGCACAGTCCTGACCTACATACTGCTGATGTCAGAGAAGGTGCTGGATGAGTTTAACCCAAAGAAATTCACGTCATCATCTTTCAACTACACAAGACTCATTCCAGCtgtgagatgctgcagaaaAGCCCTatttgaTGGGTGTGGTTTTGATGAAAGATGTTGTGAAACTGTGTCTTCTGCTCTACAATCAGCAAACTCTCATCTGATAGAGCTGAACCTGAGCAACAatcacctgcaggattcaggagtgaagctgctttctgatggaTTAAAGAGTCCACACTGTCAACTGAACATACTGAGGTTTGTCATTTAGATTCATTGATTGACAATGGTCAGCCTgaaacagcggcgtggggccatcTTCCCCTGGGCCCagcacctgcaggagggaccgtaaggggccggggGGGTGGGGGGgctgagttgttgcgggaggtcgagagataccggctagagatagtcgggctcacacGGCTTGGGCTCTGGAATCCATCTCTTTGAAAGGGGTTGGACTCTTCGCTACTCTGGTTTTGCCCATAGTGAGAGGCTGCGGGCTGgcgtgggcttgctcatagctccacAGCATAGGCaacatgtgttggagtttaacccggtggacgagagggtcgcctccctgtgACTTCGGGTTGgagggaggactctcactgtcatttgtgcctatgggccgaatggcagtgtagagtacccggccttcttggagtccttgggaggggtgctggaaagtgctccaaccggggactctatcaTCCTGCTGGGGAACTTCAAcactcacgttggtgatgctagtgacacctggaggggcatGATTGGGAGGAAtggcccccccgatctaaacctgagtggtgttctgttgttggaattctgtgctagtcacggtctgtccataacaaac

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237243.1 True 3431 mRNA 0.42 4 21182237 21186135

Neighbor

gene id symbol gene type direction distance location
LOC122342285 LOC107725790,LOC107656690 coding upstream 14276 21167249 ~ 21167961 (+)
LOC122343080 NA coding upstream 21212 21156073 ~ 21161025 (+)
LOC122342972 NA coding upstream 69909 21093453 ~ 21112328 (+)
LOC122342958 LOC107566977,LOC107677745 coding upstream 115387 21055492 ~ 21066850 (+)
LOC122343014 NA coding upstream 138219 21039780 ~ 21044018 (+)
LOC122342966 LOC107563536 coding downstream 36435 21222570 ~ 21230104 (+)
LOC122342289 LOC107685875,LOC107749047,LOC107728228 coding downstream 106177 21292312 ~ 21305636 (+)
LOC122343117 NA coding downstream 191403 21377538 ~ 21379639 (+)
LOC122342293 NA coding downstream 212682 21398817 ~ 21400148 (+)
LOC122342295 LOC107573707,LOC107575631,LOC107689603,LOC107741456,LOC107667978 coding downstream 261105 21447240 ~ 21449510 (+)
LOC122343163 NA non-coding upstream 14995 21163756 ~ 21167242 (+)
LOC122343205 NA non-coding upstream 48635 21131154 ~ 21133602 (+)
LOC122343166 NA non-coding upstream 55817 21126085 ~ 21126420 (+)
G30056 NA non-coding upstream 63715 21117661 ~ 21118522 (+)
LOC122343171 NA non-coding upstream 209988 20971510 ~ 20972249 (+)
G30077 NA non-coding downstream 62052 21248187 ~ 21248425 (+)
G30090 LOC107749046 non-coding downstream 89975 21276110 ~ 21301007 (+)
G30085 NA non-coding downstream 125420 21311555 ~ 21337024 (+)
G30104 NA non-coding downstream 147110 21333245 ~ 21721910 (+)
G30110 LOC107718524,LOC107563870 non-coding downstream 183287 21369422 ~ 21374537 (+)
LOC122342286 LOC107578117 other upstream 7897 21169193 ~ 21174340 (+)
G30058 NA other upstream 39406 21118562 ~ 21142831 (+)
G29961 NA other upstream 475391 20696672 ~ 20706846 (+)
G29921 NA other upstream 813421 20367675 ~ 20368816 (+)
LOC122342270 NA other upstream 835513 20344346 ~ 20346724 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other downstream 182508 21368643 ~ 21761181 (+)
G30119 NA other downstream 202058 21388193 ~ 21630120 (+)
G30115 NA other downstream 453405 21639540 ~ 21641756 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 1045335 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 1110762 22296897 ~ 22305148 (+)

Expression


Co-expression Network