LOC122342994 (LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223)


Basic Information

Item Value
gene id LOC122342994
gene name LOC107749047,LOC107685875,LOC107728228,LOC107570416,LOC107671223
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24207655 ~ 24220008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237254.1
ATCAGGAAAATACCCGTATTTGATCAAGAAAACAAGtcttaaacatatatatttaaaataattgtataaagCCATATTGAAATAAGTCATTTATTATCATGAtcgtttaataaattgtgtttatttgtaaaatgacCAGCTTCTCCTCGTAGCCTCAGCACTGCTCTAAACAGGAAGAACCTTgctgagaaaaagaaagtgaaagcaGATTGTGTTTTACATGCGACGTTTACACTTGATCGTAAgaacttttcttcattttcaaaaactgatcattcatctttttatttgttcttgtgGGAAGATACATAAACTTCAtgagaaaacaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGctcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagtgACAGGTCTATGGATGAGCCAATGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTCAGttcagttcatCAGAAAAGATCAGAAGAAgagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAGGAGTCCTCGACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGACGCAGAGAAACCCAACACTGCTGAATAagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGACAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTAACAACTTTTTCCCTGAaactaaagaaatggaaatatccagtgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaaccTGATTGTGGGGaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCCCAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCAAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaAAACTATGAGAAGAACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGGCATTGATGAGACAGAAGCATCAGTTTACTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTCATTCATCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGCACACCTCTCCTTAACATTAAAGAAGATAAATGTGTTTGACCAAATCCAACAAAAATCTTTCTTTACTGTCTTCTTTAATAAAATCAGACTATTATCTGAGCTGCATGAGAGAGCTGTGAACGAGGCTCTAAAGAGTAAGAATGGACACCTGGATCTTTTCCTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCCGATAACAAAGAGGAAACAGTTCAGTTCATCAAACAGAAGATCAGTGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAATCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAACAGTTTATTGGGAAACGAGATACAGTAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGACTTACAGGTTCGATAAGTGAATGATTTCTAATCCTGACTGCAAGAGGCTCAATCTCTATGACAAAAAGCAAAGGACTGAATGGATATTTCAGCCAGAAGATCTGGAAAGATGTGTATTGGTCTGCCCTCATAGTGAAGAGGAACCAGTTGAagtattttttccttctttggAAAGTGATGAATCTGATGAATCcataaattgttttatgacaaAGGGCTTCATTCTCTGATTGTATTTTCACACACTTCTGCTCAATGTGAGAGAGCAGACGGTCAAAATCTGCAGTAGCATTTACAACCTCAATTGATTCTATCCCAGAGCCTCAAAAAAGATGCCTGAGTGGACACCAAAGATGCTTCCACAAAAAACTAATCGGTCGGTCATCGTTTTGCTCATATTCTTTAATGTCAAAAGAATACTGCTAGATTCAGACTCGAAACCAGACTCAGAGACTGAAGCGG

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237254.1 True 2947 mRNA 0.42 6 24207655 24220008

Neighbor

gene id symbol gene type direction distance location
LOC122343128 LOC107728228,LOC107569032,LOC107685875,LOC107705465,LOC107574018 coding downstream 278121 23816849 ~ 23929534 (-)
LOC122343107 LOC107566978,LOC107575457,LOC107561645,LOC107655025 coding downstream 479737 23725752 ~ 23727918 (-)
LOC122343073 NA coding downstream 948336 23256365 ~ 23259319 (-)
LOC122342325 LOC107741456 coding downstream 957041 23240075 ~ 23250614 (-)
LOC122342324 NA coding downstream 970575 23230042 ~ 23237080 (-)
LOC122343156 LOC107674852,LOC105007321,LOC107551422,LOC103361099,LOC107732279,LOC107677819,LOC107725800 coding upstream 45341 24265349 ~ 24266607 (-)
LOC122342338 NA coding upstream 92834 24312842 ~ 24319112 (-)
ckap4 NA coding upstream 256988 24476996 ~ 24479914 (-)
LOC122343108 LOC107677819,LOC107725800 coding upstream 265354 24485362 ~ 24492499 (-)
LOC122342346 LOC107581033 coding upstream 322130 24542138 ~ 24544170 (-)
G31088 NA non-coding downstream 79747 24126947 ~ 24127908 (-)
G31090 NA non-coding downstream 81994 24122812 ~ 24125661 (-)
G31082 LOC107710764 non-coding downstream 106788 24100450 ~ 24100867 (-)
G31072 NA non-coding downstream 170904 24036349 ~ 24036751 (-)
G31063 NA non-coding downstream 197605 24003692 ~ 24010050 (-)
G31109 LOC107656690 non-coding upstream 29828 24249836 ~ 24426069 (-)
G31115 NA non-coding upstream 78772 24298780 ~ 24540339 (-)
G31127 NA non-coding upstream 85247 24305255 ~ 24312292 (-)
LOC122343180 NA non-coding upstream 93782 24313790 ~ 24314321 (-)
G31142 NA non-coding upstream 111869 24331877 ~ 24332563 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other downstream 96982 24110224 ~ 24110673 (-)
G31050 NA other downstream 435887 23745486 ~ 23771768 (-)
G31017 NA other downstream 661286 23478525 ~ 23546369 (-)
LOC122342328 LOC107671223,LOC107685875,LOC107728228,LOC107749047,LOC107553362,LOC107574018,LOC107569032,LOC107575215 other downstream 770640 23416891 ~ 23437015 (-)
G30450 NA other downstream 1962495 22128454 ~ 22245160 (-)
G31134 NA other upstream 84088 24304096 ~ 24497596 (-)
G31120 NA other upstream 86493 24306501 ~ 24495178 (-)
LOC122342340 NA other upstream 103962 24323970 ~ 24327263 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other upstream 534048 24754056 ~ 24760786 (-)
G31314 NA other upstream 1339032 25559040 ~ 25561198 (-)

Expression


Co-expression Network