LOC122343008 (LOC107575457)



Basic Information


Item Value
gene id LOC122343008
gene name LOC107575457
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23168155 ~ 23183546 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043237277.1
tttttaaaaggaaCGCAGACTTCATGGAGCAAAGGTTTTCACCTTTGTGCATCTGAGTGTTCAAGAGTTCTTCGCTGCAGTCCACGTGTTTCTCTGTTATCTGAACAAGAACATACAAGagcttcagtttttctttgatgGGCCAGAAGAAAATGTCACATTAGAGAAGTTACTACAGAAGGCCATTGAAAAAGCCATGAAGAGTCAGAGAGGACATCTGGATCTGTTCCTGCGGTTTCTGTTGGGCATTTCACTGAAATCCAGTCAAATCCTGCTTAAGGGCCTgatcacacacactgaagacaCTACAGAGAGCATCATGAGAATAAGTgaatacattaaacaaaaacacaacaagtaCAATATCTCAGATGAAGCTTCAGTCAACCTGTTCTACTGCTTACTTGAGCTCAAAGATCATTCATTATATGAGGAAATTCAGAGTTACAttagttcaaatgaacatccaGGAAGATACCTCTCATCTTCAATGTGCACAGTCCTGACTTATGTATTGCTGATGTCAGAGAAGGTGCTGGACGAGTTCAACCCGAAGAGGTTCACATCAAAACAAGCAGACTACAAGAGACTCATTCCAGCtgtgagatgctgcagaaaAGCCCTATTTGACGGCTGTGGTCTTGatgaaacatgctgtgaaaCTGTTTCTTCAGCTCTACAATCACCTAAATCTCATCTAACAGAGCTGGACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCATCTGAACATACTGAGGCTGTGTGGCTGTAATGTCACTTTTCATTCCTGTGAAAGTTTGTCCTTAGCCCTACAATCCTTAAACTGTGTCCTGAgtgagctggacctgagtaacaatgacctgcaggattcaggagtgatgctgctttctgaaggactgaagagtccaaactcaAAGCTGGAGATTTTAAGATTTTGCAtatgtaatctcactgcacagtCTTGTGGGAGTTTATcgtcagttttacaatcctcaaactctgtTCTGAGAGAACtcgacctgagtaacaatgacctacaggattcaggagtaaagcttctttctgaaggactgaagagtccaaactccAAGCTGGAGACACTGAGGTTGTCTGGCTGTATGCTGACAGAGaaaggctgtggttatgtgtctttagctctgacttcaaacccctcacacctgagagagctggatctaagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcTCTGAACAAATACAAtGTGGACCATGGAGGAGAAtccaggattacagcaggactGAAGAAATatgagtgttttttcacactggatccaaacacagcacacactaaaCTCagtctgtctgaggagaacagagagGTGACAGgtgtgtctcagtctcagtcgtatcctgatcatccagacagatttgattgTGTGcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagaccGAGTGGAGCAGAGATACTGTGTCTGTATCAGTGTTatataagaacatcagcaggaagggaGAGGgtgcagagtgtgtgtttggacgtaatgatcagtcctggagtttgcgCTGCACTCCTCACAGAtactcattcagacacaataaCATAATGACTGATCtctctgtgaagcccatcaGCATCAGCAGAAGAACAGGAGTGTATGATGATATCTATAAAGTAGGggtgtatgtggatgagagcgcaggaactctgtccttctacaacatctctgacacaatgacacatttacacacagtccagaccacattcactcagacccTCTGTCCTGggttttatctttattattctggctcatcagtgaaactgtgtcgatgaatcagaagagactgagCAGAGTTGTAGGGAATCGGTGTGAATTAGACAATCAGGGTCGAGTTCCACAAAGAGGCTTGCAACATTAACACAAACATTTCAATTCAGGAAGAAGATTTTCACTTTTAGGCCAAGTAACCAAGATTCATGGTCAAAAACACAGCACATCATCAACATAACAtgggtaaaataataaaaaagaatctgTTGGATGCATCTCCATCCCCCCACTCAGAACACAGAACTTTTAACCTTTGGTTTGCACAGAactaattttgttttcatccacATGCATGCTCAAAATCATCTTAAAAAGACTTTAATCACTTATATGCATAACTGCATATTATATGTAACCCACATGTTTAACTATCACATGCTAATCGCtaattgttaatgtatttgga

Function


NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043237277.1 True 2331 mRNA 0.42 7 23168155 23183546

Neighbor


gene id symbol gene type direction distance location
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 419535 22739960 ~ 22748620 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding upstream 461661 22695800 ~ 22706494 (+)
LOC122343101 NA coding upstream 478476 22685702 ~ 22689679 (+)
LOC122342965 NA coding upstream 546269 22613115 ~ 22621886 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding upstream 606392 22548617 ~ 22561763 (+)
LOC122343131 NA coding downstream 42665 23226211 ~ 23229732 (+)
LOC122343152 NA coding downstream 168381 23351927 ~ 23375871 (+)
LOC122342330 LOC101883771,LOC101885620,LOC108191338 coding downstream 429932 23613478 ~ 23614930 (+)
LOC122342945 LOC107563545 coding downstream 450252 23633798 ~ 24144571 (+)
LOC122343046 NA coding downstream 901413 24084959 ~ 24091352 (+)
G30628 NA non-coding upstream 25076 23066254 ~ 23143079 (+)
G30637 LOC107741456,LOC107727338,LOC107685875,LOC107561645,LOC107563546,LOC107569100,LOC107670352 non-coding upstream 36450 23131314 ~ 23131705 (+)
G30624 NA non-coding upstream 41632 23006974 ~ 23126523 (+)
G30607 NA non-coding upstream 298452 22853481 ~ 22869703 (+)
G30609 NA non-coding upstream 306585 22858290 ~ 22861570 (+)
LOC122343191 NA non-coding downstream 3770 23187316 ~ 23193862 (+)
G30652 NA non-coding downstream 80051 23263597 ~ 23264466 (+)
G30653 NA non-coding downstream 80987 23264533 ~ 23264741 (+)
G30654 NA non-coding downstream 82320 23265866 ~ 23266302 (+)
G30658 NA non-coding downstream 90959 23274505 ~ 23282812 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 148 23163695 ~ 23168007 (+)
G30632 NA other upstream 8399 23157559 ~ 23159756 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other upstream 37966 23129106 ~ 23130189 (+)
LOC122342317 NA other upstream 388016 22777983 ~ 22780139 (+)
LOC122343019 LOC107705900 other upstream 485443 22661826 ~ 22682712 (+)
LOC122342976 usp15,LOC107685889 other downstream 933743 24117289 ~ 24131487 (+)
LOC122342990 NA other downstream 949504 24133050 ~ 24141446 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other downstream 1270724 24454270 ~ 24466400 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other downstream 1281908 24465454 ~ 24471450 (+)
LOC122343159 NA other downstream 1452806 24636352 ~ 24638654 (+)

Expression



Co-expression Network