LOC122343009 (zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085)


Basic Information

Item Value
gene id LOC122343009
gene name zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17805840 ~ 17811463 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237278.1
TATCCTTTCTTGGAGATTAACAATGAATATAACAGATCCTTATTATGATGCGTCAGACTGTGGGACTTCAGTACAAGTATACTGAAGCCGATTTAAAGAAAGCGCGTgcttttctgtttgtatttggTGCGCTATATATGAGCTGAATCAGACTTTGACTTTGGGGAGTGTGCGTCAAAACGCGTCTCTTATTCACGCTAACAAAGTGCGCGTCAAACATACCCGTACGGTCTGCACGCCACGGCCTCTGCGGATAAATAGCACACAAAATGCAAATCTCCTGCCACTGATTGGCAAATTCAAGCGCCCCAAACCTTGGCTCACGAAACCCCGCCGGCCTCTGTAGAGATCGCAGGACCCTAAATATTCTATGAacgccaaaacaaaaacaaagtgcgTATCACATGCACGCAAGACGTCCTATCACGTGCACGCCAAACTCACTTTTTTTGCGTATAGATTGCAGGCAAAGTGCAAAAATCGTGCTACTGATATTTCAACCCTTTCGAAGCCCTCACAGCACGGCCACAAAAGcgcgtatcatatgcacgccgACGTCACTTCACGCGTACGCCACAAAACCTCAGTTCACGAACTTTCCCTTGAGGAACCCAAACGCGGTTTTCTGTACTTCTTTGGCCTTTTTATCTATACGCTCGCTTTCTTAGTTGGCAACCTCCACCCGAAAGGGATGAGTGGCCACAAAAGCAGATCGAGACAGTGAATGAGCGAGCCCTCTCCTGGGACTCTGTCTTTTTGCTCAGGGTTGCAGGTTTGCCCCTTCACCACCGCCCATGCGTCAGATGATGCTCGCGCGCTCCGACTATAAAAGACGCCGGTGCGCCATCCCGACCGgcactctctttctctttctctgtcttccCGCATCCACACACTTACTTCACTCGCTCGGTCCGTGATCTCCAGCGCGCCAGCATGAGCTATTCCGGCGACATGTACACGAGCAGCTCCTACAGGAAGATTTTCGGAGATGCGCCGCGGCGCGTCCCGACGGCGGGTTACCGCTCCGGAGCGCAGCTTCAGCAGCAACATCAGCACCGCACCTACGGCTCTCCGTCCCCTGCGATCGTATCCTCAAGTTACCGGACCAAGCGCGGCTTCCAGCCCATGCAGGACTCCGTGGACCTGACCCAGACCACCGCCATCACCAACGAGCTGAAGATCATCCGCACCAACGAGAAGGAGCAGCTGCAGGGCCTGAACGACCGCTTCGTGACGTTCATCGAGAAGGTGCACAACCTCGAGCAGCACAACAAAGTTCTGGAGGCGGAGGTCGCGCTGCTGCGCCAGCGTCACAGCGAGCCGTCGCGTCTGCACGACCTCTACGAGCAGGAGATCCGCGAGCTGCGCGCGCGCGTCGAGGAGCTGACGCACGAGAAGAGCCAGATGCACCTGGACTGCGTGCAGATGAACGACGCGCTGGAGCGCCTCAAGGACAAGCTGGAGGAGGAGAGCCGGCTGAGGGAGGAGGCCGAGGGCAGTCTGAAGGGGTACCGCAAGGACGTGGACGACGCCACGCTGACGCGCCTGGAGCTGGAGAAGAAAGTGGAGTCTCTGCTGGATGAGATCGCCTTCCTCAGGAAGGTGCACGAGGAGGAGCTGCAGGAGCTCCAGGCGTCGCTCCAGGCCACGCAGGTGTCTGTGGAGATGGGCGTGAGCAAGCCGGACCTCGCTGTAGCCCTGAAGGACATTCGTGTCCAGTCACAGTCTCTCTCCCGGAACCAGCAGCAGGCGGAGGAATGGTACCGCTCAAGTTCGTCCACGGTGACGAGGGCGGCGGCGCGCAACAACGATGCCCTGAAGCAGACCAAAGACAGGCTGTGTGAGTACCGCCGACAGCTGCAGGCCCGCACCCTGGAGATCGAGGCCCTGAAAGCCCACAACGAGGCTTTAGAGAGACAGCTGGCGGAGATGGAGGACCGCCACAGCAACGAGATCGGCGAGCTGCAGGACACTATTCAGCAGCTGGAATCCGCTCTGAGGAGCACCAAGGGTGAGATGTCCCGTCATCTGCGTGAATACCAGGACCTGCTAAACGTCAAGATGGCGCTGGACATCGAGATCGCCGCCTACAGGAAGCTGCTGGAAGGAGAGGAATGCCGTCTGAGCTCTGTGGGCGGTGCCTTGCTACACTCCGCCTACTCTTACACGCCGAGCCGCACCTATGCCCTGAGGAAGGGCGGAGCCAAACCCgagacagaggaagaggaagagcaggaagaggaagaagaggaggagaaggaagaggaaggagaagaggaggaggaggagaggaggaggccGAGAAGGAGAAGAACAGGACGGGGGGAGGCGGcgaggagggaggaggaggaggaggaagaagaagaagaacaggaggatgagaaggaaaaggaaaaagccGATGAGAAGAAGGAaaaggaagagaagaagagcccaaaggaacagaaagagaatgagaaagagaaagaaaaggagaaggagaaggagaagaagagcGATAGCAATAAGGCAGACAGCAAGAGCGCTAAGAGTGAGAAGGGGGACAATAACAAGAGTGAGAAGACCTCGGCGCTCAAGAGCAAGTAAAGCATCGACAAAAACACATCCagcgtccatccatccatccatcctcacCTCACTGACCTCATCTGGATCTCTGCTGCTGACCCAAGAGTTCTGCTCATCATTTACTTTCTTACAATAAGAGAGTGTTTCACACAAACCTCCGGAAGGAAAGA

Function

symbol description
zgc:65851 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in nervous system and neural tube.

NR:

description
PREDICTED: low molecular weight neuronal intermediate filament-like, partial

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237278.1 True 2741 mRNA 0.56 6 17805840 17811463

Neighbor

gene id symbol gene type direction distance location
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding upstream 139943 17644435 ~ 17665897 (+)
clocka clock,clocka,LOC107701480 coding upstream 175018 17582070 ~ 17630822 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding upstream 227036 17565453 ~ 17578804 (+)
LOC122342653 l3hypdh,LOC107684001 coding upstream 315545 17483433 ~ 17490295 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding upstream 394988 17397135 ~ 17410852 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding downstream 89978 17901441 ~ 17902917 (+)
fabp1a fabp1,fabp1a,LOC107745323,LOC107597935 coding downstream 100976 17912439 ~ 17915594 (+)
exosc2 exosc2,exos2 coding downstream 121842 17933305 ~ 17937916 (+)
abl1 abl1,LOC107670387,LOC107597931,LOC107674916,LOC107566858 coding downstream 128221 17939684 ~ 17963519 (+)
ddx54 ddx54,LOC107729212,LOC107745378,LOC107674901,LOC107597958,LOC107566861,LOC102784149 coding downstream 173530 17984993 ~ 17997658 (+)
G29306 NA non-coding upstream 59523 17745528 ~ 17746317 (+)
G29305 NA non-coding upstream 66173 17738067 ~ 17739667 (+)
LOC122343158 NA non-coding upstream 94129 17710055 ~ 17711711 (+)
LOC122342426 NA non-coding upstream 136079 17667150 ~ 17669761 (+)
G29272 NA non-coding upstream 251650 17553833 ~ 17554190 (+)
G29317 NA non-coding downstream 6083 17817546 ~ 17817933 (+)
G29331 NA non-coding downstream 6683 17818146 ~ 17818416 (+)
G29334 NA non-coding downstream 11787 17823250 ~ 17824265 (+)
G29329 NA non-coding downstream 42998 17854461 ~ 17855364 (+)
G29320 NA non-coding downstream 72865 17884328 ~ 17965751 (+)
atp5mj NA other upstream 765010 17038419 ~ 17040830 (+)
G28982 NA other upstream 1331459 16473898 ~ 16474381 (+)
G28899 NA other upstream 1820114 15985219 ~ 15985726 (+)
G28891 NA other upstream 1963985 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 2150562 15565499 ~ 15655278 (+)
G29526 NA other downstream 488952 18300415 ~ 18301189 (+)
G29545 NA other downstream 624997 18436460 ~ 18461317 (+)
G29642 NA other downstream 1071716 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1478757 19290220 ~ 19342911 (+)
G29835 NA other downstream 1919799 19731262 ~ 19786128 (+)

Expression


Co-expression Network