LOC122343010


Basic Information

Item Value
gene id LOC122343010
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24577163 ~ 24581794 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237279.1
ctttaaacGGTTTCTTAAAACTTGTAAAGAGTATTATTAGAGGCTAAGCGTTAAAGTCGCATATGCACCTtttagtctttgttttctcCTCTTGAAGTCTATGGAAGCACATAGAACAATGCATAGGAAAGTTATGAAATTTGGCACAGAGACAGAAGACAGTCTGAACTTGTACTTTTGCTTGTTGTCATCAGACTGGTCTTGCTAGATTCTTTGGGACACACCGAGAACAATGATACCAGTTATGTCATAGCTGGCTGGACTTCTTTTCTTGAAAAACCTGCTTTTTTGAACTCCTGGATCAGACTTTCTTAATCCTTGTCCTGCCATTGCTCTACAAATTTTAGCTCCATCCCTaatcacacacacctgaaccaggTAATCAGGTCACATATAACATGTCTAATGAAAGTTATCATTAAAAGGAGATCTCCCTTGACATCCATGTGGAGAAGAACATTGGAAACATTGTCCAGGTGAAACTTGAAAAGGAGAAACATCTTATCAGTTGTCCGTGGTTCTGTAAACATATCACAGTGCAGACCCCTTCTGGATATCGCTTTGAGTTCCCCTGTTACCGCTGGTTGGTGGACGACAATGAAGTGATGATCCGAGAAGGAACTGCTCGACTGCCTCAGAATGACACAGAACCTTTTCAAGAGCAAAGAAAAGATGAACTGGAATCTAGACAGAAAATCTTCAGATGGAACGAGTGGAGACCAGGCTTCCCTATGAGCATAGATGCCAACGTGGATGATCTTCCTAAAGAAGTTCAGTTTGATGGAGAAAAGAATTCCCAGTGGTATTGGGATTTAGCGGAAGTGTTTATAGAAACGAAACTGGACAAAATAGATGGTTTAATGGAGTCCTGGAAAGATATTACAGACTTTGAAAAGATATTTGGgcatttaataaacaagaaCCAAGTACTAGTGGATTTGATGCAGAACTGGACCGAGGATTACATGTTCGGCTACCAGTTCTTGAACGGCTGCAATCCTGTCACGATCAAGAAGTGCACGGATCTTCCAGAGAAATTCCCCGTCACACACGAGATGGTCAAGGGCTCTCTGAAGGGACGCCAACTACATGAGGAGCTACGGAAAGGAAACATCTACATAGTGGATTATGAAATACTGAAGGACGTCCCAGCAGCCAGCCAGCGCTATCTGACCGCACCAATCTGTCTACTGTACAAGAACGAAGTGGACCAAATGTTGCCAATCGCCATTCAGCTGAGTCAAACCCCAGGAGAAATGAGTCCAATCTTTCTTCCAAGTGATAATGAACATGACTGGATGCTTGCCAAGATGTTTGTGAAATCCTCAGACTTCATCGTACACCAGCTGGTCACACACCTTCTCAAGACACATCTAGTGTCTGAGGTTTTTGAAATGGCCATGTACAGACAGCTGTCTGCCGTCCATCCCGTATACAAGTTACTGATGCCTCATGTTCGTTTCACGATCGCAATCAACGCGGAGGGCCGTGAAAAGCTCATCAGTGAAGATGGGGTCATCAGCAAGGTCAGTAGCTTTGGTGAAGCAGGGATGGTGAAACTGATACACAAAGCCATGGAGGCTTTAACCTTCAAGTCCCTGAACATCCATGAGGACATAAAGGCTCGAGGAATGGAAGATACGCCCAACTACTATTACAGAGACGATGGCTTGAAGATCTGGGAGGCAATCAACCATTTTGTTTCGGCCGTGGTCAAGATCTACTATGATAGCGATGAAGCAGTTCGAGAAGACGTGGAGATTCAAAGATTTGTTAAGGACGTTTCCTGCTTTGGCATGAATAACTCTCACAAGTTTCCAGAGTCTCTGGAATCTCGAGAGGAGTTGATCGAGTACCTGACCGTGGTGATTTTCACAGCTTCAGCACAACATGCCGCTGTCAACTTCGGACAGTTTGACTGGTACGGCTGGATCCCCAACAGTCCTTCCACCATGCGCAGACCACCTCCTCAACGGAAGGGGGAAGTGGATATGAAGCGTATCCTGGAGACTCTGCCGGACCGGGATTGTTCCAGAAATCTTCTGGGAACGGTTTGGGCTCTCACTCGGACCGAGAAGAATGAGAGGTTCTTGGGCATGTATCCAGATATGTACTTCACAGAGCAACCCGCGAAGATAGCCATTAAAACTTTCTGCCACAAACTAAAACAGGTGACCAACATCATCAAGAGTCGgaataaagaaataacattGGATTATTGCTATCTGTCCCCAGACAAAATCCCCAACAGTGTTgcaatttaagaaaatattagaAGAAACACTTTCTTTAGGCCTGATCATAGTGTTTATTGTTGAGAGATGTATATGCTctcatcattttatttcattttgtgcatataagtgcaacatttttcagtttaaacatttgttatagcgtgttttctattgtgaataaaatattggctcatgatttgaaattctttgtagttttcattttattcaaatgataaaaatgaccCAACATATCCAGAATTCAGGTTGTCTTGTTAATGTGAGGTTCTTTCATTGTTAGTGGGCTAATCAACCCTGGCTTTAAATACAGATTCAGTGATTTGAAGTTTTTGTTCTCAAAACTCGTCTGATCAATAGTTTAACATCCCAACTCTTCagaaattgatattttttacaaatgtcaAAAAGAGTTCACGTGATTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
K00454 LOX2S; lipoxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237279.1 True 2678 mRNA 0.42 13 24577163 24581794

Neighbor

gene id symbol gene type direction distance location
LOC122343032 NA coding upstream 2731 24568994 ~ 24574432 (+)
LOC122343045 nots,LOC107677818,LOC107569115,LOC107725781 coding upstream 75033 24498607 ~ 24502130 (+)
cct2 cct2 coding upstream 79583 24493077 ~ 24497580 (+)
terfa NA coding upstream 91810 24480242 ~ 24485353 (+)
LOC122343091 NA coding upstream 100380 24472007 ~ 24476783 (+)
LOC122342982 NA coding downstream 14059 24595853 ~ 24605817 (+)
LOC122342946 NA coding downstream 25243 24607037 ~ 24619391 (+)
LOC122343105 NA coding downstream 67173 24648967 ~ 24653215 (+)
LOC122343093 NA coding downstream 80035 24661829 ~ 24665576 (+)
LOC122343104 NA coding downstream 85912 24667706 ~ 24672151 (+)
G30812 NA non-coding upstream 90276 24456022 ~ 24486887 (+)
LOC122343172 NA non-coding upstream 157595 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 262875 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 567272 24003642 ~ 24009891 (+)
G30751 LOC107671223,LOC107569100,LOC107575457,LOC107747635,LOC107679413,LOC107566978,LOC107670352 non-coding upstream 575599 23978432 ~ 24001564 (+)
G30877 NA non-coding downstream 132903 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 407073 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 732429 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 733385 25315179 ~ 25315553 (+)
G31380 NA non-coding downstream 1205586 25787380 ~ 25787901 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other upstream 105713 24465454 ~ 24471450 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other upstream 110763 24454270 ~ 24466400 (+)
LOC122342990 NA other upstream 435717 24133050 ~ 24141446 (+)
LOC122342976 usp15,LOC107685889 other upstream 445676 24117289 ~ 24131487 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 1409156 23163695 ~ 23168007 (+)
LOC122343159 NA other downstream 54558 24636352 ~ 24638654 (+)
LOC122343125 NA other downstream 57295 24639089 ~ 24646601 (+)
LOC122343086 NA other downstream 91097 24672891 ~ 24674412 (+)
G30882 NA other downstream 139630 24721424 ~ 24728447 (+)
LOC122342408 NA other downstream 162054 24743848 ~ 24767552 (+)

Expression


Co-expression Network