cct2 (cct2)


Basic Information

Item Value
gene id cct2
gene name cct2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24493077 ~ 24497580 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237289.1
CGCACGCGCAGAGACTCTTAATTTGAAGAGCGCTCGCGCAGAAGCGCGTCACAGGAAGCGGATGCTCTGTCGCGCTCCTCCCCAGTCCGCTCTTCCGGTCGCGTGCGAGTCTCTACGGCACATCCTAGCATCATCATGGCGTCTTTATCGATGGCTCCGGTCAGTATCTTCAGGCACGGCGCAGATGAGGAGAAGGCCGAGACGGCTCGCCTGtcGTCCTTCATCGGCGCCATCGCTATCGGGGATCTGGTGAAGAGCACCCTGGGACCCAAGGGCATGGACAAGATCCTGCTCGGAGGCGGCAAGGACAGCAACGTGACGGTCACCAACGACGGAGCCACCATCCTGAAGGCCATCGGCGTCGACAACCCCGCCGCCAAAGTGCTCGTGGacatgTCGAAGGTGCAGGACGACGAGGTGGGAGACGGGACCACGTCCGTGACGGTGCTGGCGGCCGAGCTGCTGCGGGAAGCCGAGCTGCTGATCGCTAAGAAGATCCACCCTCAGATCATCATCTCCGGCTGGAGGAAGTCCACGCAGGCGGCCCGTGAGGCGCTCCGGGAGGCCGCCGTGGATCATGGGAGCGACGAGCAGCAGTTCCAGCAGGACCTGATGAACATCGCTCGCACCACGCTCTCCTCCAAGCTCCTGACGCACCACAAGGACCACTTCTCCCGGCTCGCCGTCGAGGCCGTGCTCAGACTCAAGGGATCTGGCAACCTGGAGGCCATCCACGTCATCAAGAAGCTGGGAGCCAGCCTCACCGACTCCTACCTGGACGAAGGTTTCCTGCTGGACAAGAGGATCGGAGTAAACCAGCCCAAGAGGATCGAGAACGCCAACATCCTGATCGCCAACACGGGCATGGACACGGACAAGATCAAGatctTCGGCTCCAGGGTGCGTGTGGACTCCACCGCCAAAGTGGCTGAGATCGAGTCAGCTGAGAAGGAGAAGATGAAGGAGAAGGTGGAGCGCATCCTCAAGCACGGCATCAACTGCTTCATCAACAGGCAGCTGATCTATAACTACCCCGAGCAGCTGTTTGCGTCCGCCGGGGTCATGGCCATCGAGCACGCGGACTTCGTGGGAGTGGAGCGCCTGGCTCTCGTCACAGGAGGAGAGATCACCTCCACCTTTGATCATCCTGAGCTGGTGAAGCTCGGTCACTGCAAGCTGATCGAGGAGGTGATGATCGGAGAGGACACCCTCATACACTTCTCTGGAGTGGACATGGGTGAGGCCTGCACCATCGTCCTGAGAGGAGCCACGCAGCAGATCCTGGACGAGGCTGAGCGCTCGCTGCACGACGCCCTGTGTGTCCTCGCTCAGACCGTCAAAGAGACACGCACCGTGTTCGGAGGAGGCTGCTCTGAGATGCTGATGGCTAAAGCTGTGTCAGATCTGGCCAATCGCACGCCAGGAAAAGAGGCTGTGGCCATGGAGTCCTTCGCTAAAGCCCTGAGGATGcTGCCCACCATCATCGCTGATAACGCTGGCTATGACAGCGCAGAGCTGGTGTCTCAGCTGAGAGCCGCCCACCAGGACAACAAGAGCACCTTCGGCCTGGACATGGCCCAGGGTGCGGTGGGAGACATGGCGGCTCTGGGCATCACCGAGAGCTTCCAGGTGAAGAGGCAGGTGCTGCTGAGCGCGGCCGAGGCGGCGGAGATGATCCTGCGCGTCGACAACATCATCAAAGCTGCTCCCAGgaagcGCGTGCCGGATCATCACCCCTGCTGAACACCCAGCAGCCCGTGTATTTATTGACAGGAAGTTGATGCTCTTTGTTTCGTAGCCCCGTGTGTAGTTGCACTTCCTAATGTATGTTACTGCTCTACAcgttgacctttgacctttgttTACTCAATAAACCGTCAAGACTGA

Function

symbol description
cct2 Predicted to enable ATP binding activity and unfolded protein binding activity. Acts upstream of or within Kupffer's vesicle development and melanosome transport. Predicted to be located in cytosol. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT2 (chaperonin containing TCP1 subunit 2).

NR:

description
T-complex protein 1 subunit beta

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0006457 protein folding biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09494 CCT2; T-complex protein 1 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237289.1 True 1887 mRNA 0.60 16 24493077 24497580

Neighbor

gene id symbol gene type direction distance location
terfa NA coding upstream 7724 24480242 ~ 24485353 (+)
LOC122343091 NA coding upstream 16294 24472007 ~ 24476783 (+)
ttll1 ttll1,LOC102779306 coding upstream 39869 24449021 ~ 24453208 (+)
LOC122343053 NA coding upstream 59251 24427508 ~ 24433826 (+)
LOC122342343 NA coding upstream 77851 24414458 ~ 24415226 (+)
LOC122343045 nots,LOC107677818,LOC107569115,LOC107725781 coding downstream 1027 24498607 ~ 24502130 (+)
LOC122343032 NA coding downstream 71414 24568994 ~ 24574432 (+)
LOC122343010 NA coding downstream 79583 24577163 ~ 24581794 (+)
LOC122342982 NA coding downstream 98273 24595853 ~ 24605817 (+)
LOC122342946 NA coding downstream 109457 24607037 ~ 24619391 (+)
G30812 NA non-coding upstream 6190 24456022 ~ 24486887 (+)
LOC122343172 NA non-coding upstream 73509 24417843 ~ 24419568 (+)
G30819 NA non-coding upstream 178789 24310339 ~ 24314288 (+)
G30754 NA non-coding upstream 483186 24003642 ~ 24009891 (+)
G30751 LOC107671223,LOC107569100,LOC107575457,LOC107747635,LOC107679413,LOC107566978,LOC107670352 non-coding upstream 491513 23978432 ~ 24001564 (+)
G30877 NA non-coding downstream 217117 24714697 ~ 24714998 (+)
G31223 NA non-coding downstream 491287 24988867 ~ 24989274 (+)
G31226 NA non-coding downstream 816643 25314223 ~ 25314596 (+)
G31228 NA non-coding downstream 817599 25315179 ~ 25315553 (+)
G31380 NA non-coding downstream 1289800 25787380 ~ 25787901 (+)
LOC122343023 LOC107568558,LOC107685877,LOC107725785,LOC107728057 other upstream 21627 24465454 ~ 24471450 (+)
LOC122343028 pacsin2,LOC107725788,LOC107569113 other upstream 26677 24454270 ~ 24466400 (+)
LOC122342990 NA other upstream 351631 24133050 ~ 24141446 (+)
LOC122342976 usp15,LOC107685889 other upstream 361590 24117289 ~ 24131487 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other upstream 1325070 23163695 ~ 23168007 (+)
LOC122343159 NA other downstream 138772 24636352 ~ 24638654 (+)
LOC122343125 NA other downstream 141509 24639089 ~ 24646601 (+)
LOC122343086 NA other downstream 175311 24672891 ~ 24674412 (+)
G30882 NA other downstream 223844 24721424 ~ 24728447 (+)
LOC122342408 NA other downstream 246268 24743848 ~ 24767552 (+)

Expression


Co-expression Network