LOC122343018 (LOC107705900)


Basic Information

Item Value
gene id LOC122343018
gene name LOC107705900
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22434054 ~ 22446278 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237290.1
AAACACTCAGCATCAAACGAGAAGATACAGAGGAACCAACGAAGATggcgtttattaaagaggagagtgaagacgTGAAGATTGAAGAAACATTCAGCGTCAAAAAAGAAGATcctgaggaacaaacagCCGGAGTCCATGTGTTCATCTCCGTCATCCGCTGCATCTGATACAGACTCCTGGACCAATCAAGATGAGGACGCTGAGCCATCCACCTGCGGCACTGTCTCCGCACGTTCACCGAGGAGCAGAAGAACGGGGCCTGTTTACACCTGGAATGCATTTACATCTGGTCTTTTCATTGGAGACATGAAAACTTGGAGACATTACTTGGCAGCTGTAATGGAGAAAAACCTTGAGAGAAACCAGTCCTCCTATGATAATTAAAGACAAAGATATTTAATGTTCAAAGCTTTCTTATGCAGGTTACACTATAAGTATTATCTAAACAAACCTGCACTGACAACGAGAATTAGAAAGAAGGAAATACATATTTGGgtgttgaaatattaaatacaatgtcATCAATCAATATCTACTCAAATCTGACCTAGAAATCTGGTTTTATCAAACAATTATATGCGATtgctaatattattataaactttttacattttcctgaATGCATTCTttcctcactttctctcttcaTGTAAGTTTTATGAATGTGTGAACACGTGTGTTTATGTGTCTTTTTTATCCAAAATCATTGAGAAAAGAGAAGTATCTTGTGTTTTCACAAAGTGACGTTTTCATCAACTCAAACCAAGTCAATGCCGcggtatttttattattattattattattttgttattagtaGAAAGCAGAAAGGTTTCTTCGCTTGAGAAATGTTCAGCTTTTCCGACAGATTATGGCAAATGACTCGCTCTTAAAGGGAAAGAGACTCTGACTGGTTTATTGCATGTAATGCTCCAACTATTGGCATATCTCCAAACATGTCTCTGTCCTTAAAATAGCAATAGTGTGTTTGTGCGCATGCGCCGCGCGTCTAATCCTTAAAATAGAGCTCTGAGGCTCCAAACTAAACCTGTTTTACTCTGTTGATGTAAACTGATTTGAAAGATGAGCCGGTCTTGTATCAAATCtctgtgatcatgtgactgatGACGTTTGAGGTGATTCAAATCTTTAGTgtggtttaatttattataaagagACATTAGACTcaatgcaaacaaacataaaccaACACACAAGAACAGGAAGAGCTCTGACATCACTGTACTTCAGGAGAAAGTGGAAGTCAAACCTAATCAAAGCCTGAAACTGAATCTCTCtataaataacagaatatttagtcatttaaagaCTCTCGTGTGCACATCTGATCCTCACAGTAATGTCATCCTCCGGTGGTCCACTGACTGACGCTCTTCAGTGCTCTATATGTCTGGAGGTGTTCACTGATCCAGTCTCGACTCCATGTGGACACAACTTCTGCAAGACCTGTCTGAATAAGTGCTGGGACAACAGCCAGACCTGCATCTGTCCATACTGTAAAGaaacattcaaacaaaaacCTGATCTCAAGACTAACACCACACTCCGAGAGCTTGCAGATCACTATAAACAGAAGAGTCCTGAGAAAACATCTGATGTTCTGTGTGACTTCTGTGAGGAGAGAAAGCTGAAAGCCCTGAAGTCGTGTGTGATGTGTCAGAGCTCTTACTGTCAAACTCATCTGGAGCGTCATTTCAGAGTGGCAGCTTTGAAGAAACACAAACTGATGGATCCTGTGAGTAATCTGGAGGACTATATTTGTCAGAAACATGAAAGACCTCTGGATCTGTTCTGTAGAGAtgatcagatgtgtgtgtgttcagtctgTACTGCTACAGACCACGAGAACCACAACACTGTTCCTATAGAAGAGGAGACCACAGAGAAGAAGACTGAACTGATGAAGACACAGAAAGATGTGCAGCAGATGATCCAAAACAAAATCAAGAAGATTCAAGACATCAAACGCTCAACAGAAGCCAGAAAAagaaacacagagcagGAGAAAGCAGCCCGTGTCGAGCTCTTCACTGATCTGATCCGCTCCATTGAGAGACTTCAGACCGAACTACTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAAGAGCGAGATCTGATTGAAGAGCTGGAACAGGAGATCTCTGAGCTAAAGATGAGAAACATTGAGCTGGAGCAGCTCTCACACACTAAAGATCACCTCCACCTCCTACAGATCTACTCATTCCTGAGCATCTCCAGAAACACCAGGAACTATCCTGAGATCAGTGTGAAGACTCATGAGAGTCTGGAGACTCTGAGGAGAGCTCTGACTCAACTGAAGGACACTATAGACGAGAAACTCTCACAAACTGTCTCTTCAGAGCTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCTGATCTCATTCTGTCTGATGATGGAAAACAAGTGAGAGATGGAGACTTTACACAGAAACTCCCAGACAAACCTGAGAGATTTGATATATGTGTAAATGTCCTGGGAAAGGAGGGATTCTCCTCGGggagattttattttgaagtgcaGGTAAAAGAAAAGACTGAATGGATTTTAGGAGTGGCCAGAGAATCCATTCACAGGAAGGGACAGATCAAACTGAGTCCCAGAGATGGATACTGGACTTTGATTCTGAGGAATGGAGATGAATATAAAGCCTGTGAGGATTGtcgtgtctctctgtctctgagaGTGAAGCCACAGCGGGTTGGTGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTATGATGAGTCCAGCTCTCATATCTACTCTTTCACCGATCAGTCTTTCACTGAAAAACTCTATCCATTATTTAGCCCATCCTTAAACTATGGAGGTAAAAACTCAAATCCACTGATCATCACACCTGTcagttataataaatgaatttctCTTGATATGAAATACAAGATTATAgttatgatttttataaattgttatgtgctgctcttttttttcaatttttgaaaatgcaataatttgatatttgaatatataatatgcacattattaatgtaataatgcaaatgtttattatatttttcataaaacattatatttttcataaaacatgcCATTTTATTCCTCCATCTCAATGTGACAAAGTGAAATTtcctgtaaaaacagtaatacccTG
>XM_043237291.1
CGAAGAAACACTCAGCATCAAACGAGAAGATACAGAGGAACCAACGAAGATggcgtttattaaagaggagagtgaagacgTGAAGATTGAAGAAACATTCAGCGTCAAAAAAGAAGATcctgaggaacaaacagACTCCTGGACCAATCAAGATGAGGACGCTGAGCCATCCACCTGCGGCACTGTCTCCGCACGTTCACCGAGGAGCAGAAGAACGGGGCCTGTTTACACCTGGAATGCATTTACATCTGGTCTTTTCATTGGAGACATGAAAACTTGGAGACATTACTTGGCAGCTGTAATGGAGAAAAACCTTGAGAGAAACCAGTCCTCCTATGATAATTAAAGACAAAGATATTTAATGTTCAAAGCTTTCTTATGCAGGTTACACTATAAGTATTATCTAAACAAACCTGCACTGACAACGAGAATTAGAAAGAAGGAAATACATATTTGGgtgttgaaatattaaatacaatgtcATCAATCAATATCTACTCAAATCTGACCTAGAAATCTGGTTTTATCAAACAATTATATGCGATtgctaatattattataaactttttacattttcctgaATGCATTCTttcctcactttctctcttcaTGTAAGTTTTATGAATGTGTGAACACGTGTGTTTATGTGTCTTTTTTATCCAAAATCATTGAGAAAAGAGAAGTATCTTGTGTTTTCACAAAGTGACGTTTTCATCAACTCAAACCAAGTCAATGCCGcggtatttttattattattattattattttgttattagtaGAAAGCAGAAAGGTTTCTTCGCTTGAGAAATGTTCAGCTTTTCCGACAGATTATGGCAAATGACTCGCTCTTAAAGGGAAAGAGACTCTGACTGGTTTATTGCATGTAATGCTCCAACTATTGGCATATCTCCAAACATGTCTCTGTCCTTAAAATAGCAATAGTGTGTTTGTGCGCATGCGCCGCGCGTCTAATCCTTAAAATAGAGCTCTGAGGCTCCAAACTAAACCTGTTTTACTCTGTTGATGTAAACTGATTTGAAAGATGAGCCGGTCTTGTATCAAATCtctgtgatcatgtgactgatGACGTTTGAGGTGATTCAAATCTTTAGTgtggtttaatttattataaagagACATTAGACTcaatgcaaacaaacataaaccaACACACAAGAACAGGAAGAGCTCTGACATCACTGTACTTCAGGAGAAAGTGGAAGTCAAACCTAATCAAAGCCTGAAACTGAATCTCTCtataaataacagaatatttagtcatttaaagaCTCTCGTGTGCACATCTGATCCTCACAGTAATGTCATCCTCCGGTGGTCCACTGACTGACGCTCTTCAGTGCTCTATATGTCTGGAGGTGTTCACTGATCCAGTCTCGACTCCATGTGGACACAACTTCTGCAAGACCTGTCTGAATAAGTGCTGGGACAACAGCCAGACCTGCATCTGTCCATACTGTAAAGaaacattcaaacaaaaacCTGATCTCAAGACTAACACCACACTCCGAGAGCTTGCAGATCACTATAAACAGAAGAGTCCTGAGAAAACATCTGATGTTCTGTGTGACTTCTGTGAGGAGAGAAAGCTGAAAGCCCTGAAGTCGTGTGTGATGTGTCAGAGCTCTTACTGTCAAACTCATCTGGAGCGTCATTTCAGAGTGGCAGCTTTGAAGAAACACAAACTGATGGATCCTGTGAGTAATCTGGAGGACTATATTTGTCAGAAACATGAAAGACCTCTGGATCTGTTCTGTAGAGAtgatcagatgtgtgtgtgttcagtctgTACTGCTACAGACCACGAGAACCACAACACTGTTCCTATAGAAGAGGAGACCACAGAGAAGAAGACTGAACTGATGAAGACACAGAAAGATGTGCAGCAGATGATCCAAAACAAAATCAAGAAGATTCAAGACATCAAACGCTCAACAGAAGCCAGAAAAagaaacacagagcagGAGAAAGCAGCCCGTGTCGAGCTCTTCACTGATCTGATCCGCTCCATTGAGAGACTTCAGACCGAACTACTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAAGAGCGAGATCTGATTGAAGAGCTGGAACAGGAGATCTCTGAGCTAAAGATGAGAAACATTGAGCTGGAGCAGCTCTCACACACTAAAGATCACCTCCACCTCCTACAGATCTACTCATTCCTGAGCATCTCCAGAAACACCAGGAACTATCCTGAGATCAGTGTGAAGACTCATGAGAGTCTGGAGACTCTGAGGAGAGCTCTGACTCAACTGAAGGACACTATAGACGAGAAACTCTCACAAACTGTCTCTTCAGAGCTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCTGATCTCATTCTGTCTGATGATGGAAAACAAGTGAGAGATGGAGACTTTACACAGAAACTCCCAGACAAACCTGAGAGATTTGATATATGTGTAAATGTCCTGGGAAAGGAGGGATTCTCCTCGGggagattttattttgaagtgcaGGTAAAAGAAAAGACTGAATGGATTTTAGGAGTGGCCAGAGAATCCATTCACAGGAAGGGACAGATCAAACTGAGTCCCAGAGATGGATACTGGACTTTGATTCTGAGGAATGGAGATGAATATAAAGCCTGTGAGGATTGtcgtgtctctctgtctctgagaGTGAAGCCACAGCGGGTTGGTGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTATGATGAGTCCAGCTCTCATATCTACTCTTTCACCGATCAGTCTTTCACTGAAAAACTCTATCCATTATTTAGCCCATCCTTAAACTATGGAGGTAAAAACTCAAATCCACTGATCATCACACCTGTcagttataataaatgaatttctCTTGATATGAAATACAAGATTATAgttatgatttttataaattgttatgtgctgctcttttttttcaatttttgaaaatgcaataatttgatatttgaatatataatatgcacattattaatgtaataatgcaaatgtttattatatttttcataaaacattatatttttcataaaacatgcCATTTTATTCCTCCATCTCAATGTGACAAAGTGAAATTtcctgtaaaaacagtaatacccTG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X2

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12803 MEFV; pyrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237290.1 True 3212 mRNA 0.40 10 22434059 22446278
XM_043237291.1 False 3171 mRNA 0.40 9 22434054 22446278

Neighbor

gene id symbol gene type direction distance location
LOC122342312 NA coding upstream 28232 22404053 ~ 22405822 (+)
LOC122343041 zbtb24,LOC107736039 coding upstream 326597 22105236 ~ 22107457 (+)
LOC122343067 NA coding upstream 329122 22103318 ~ 22104932 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding upstream 591824 21841181 ~ 21842230 (+)
LOC122343035 NA coding upstream 619617 21809156 ~ 21814437 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding downstream 102339 22548617 ~ 22561763 (+)
LOC122342965 NA coding downstream 166837 22613115 ~ 22621886 (+)
LOC122343101 NA coding downstream 239424 22685702 ~ 22689679 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding downstream 249522 22695800 ~ 22706494 (+)
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding downstream 293682 22739960 ~ 22748620 (+)
LOC122343186 si:rp71-7l19.2,LOC107575109,LOC107690967,LOC107575399,LOC107575457,LOC107575637,LOC107688608,LOC107665206,LOC107671223,LOC107719059 non-coding upstream 14362 22417927 ~ 22419692 (+)
G30480 NA non-coding upstream 89240 22340162 ~ 22344814 (+)
LOC122343188 si:dkey-71l4.4,LOC107667913,LOC107575399,LOC107574515,LOC107698614,LOC107671223,LOC107663329,LOC108183671,LOC107574820 non-coding upstream 122634 22306795 ~ 22311420 (+)
G30233 NA non-coding upstream 153084 22273811 ~ 22280970 (+)
G30212 NA non-coding upstream 181535 22174955 ~ 22252519 (+)
G30526 NA non-coding downstream 58977 22505255 ~ 22506192 (+)
G30528 LOC107574372,LOC107655767,LOC107710146,LOC107574376,LOC107571418,LOC107574588 non-coding downstream 86137 22532415 ~ 22533032 (+)
LOC122343193 NA non-coding downstream 94106 22540384 ~ 22541485 (+)
LOC122343169 NA non-coding downstream 96233 22542511 ~ 22543831 (+)
LOC122343204 NA non-coding downstream 103823 22550101 ~ 22551350 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other upstream 128906 22296897 ~ 22305148 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other upstream 202130 22231470 ~ 22231924 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other upstream 672873 21368643 ~ 21761181 (+)
LOC122343019 LOC107705900 other downstream 215548 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 331705 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 682828 23129106 ~ 23130189 (+)
G30632 NA other downstream 711281 23157559 ~ 23159756 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other downstream 717417 23163695 ~ 23168007 (+)

Expression


Co-expression Network