LOC122343019 (LOC107705900)


Basic Information

Item Value
gene id LOC122343019
gene name LOC107705900
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22661826 ~ 22682712 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237292.1
CCAAACTAAACCTGTTTTACTCTGTTGATGTAAACTGATTTGAAAGATGAGCCGGGTCTTGTATCAAATCtctgtgatcatgtgactgatGACGTTTGAGGTGATTCAAATCTTTAGTgtggtttaatttattataaagagACATTAGACTcaatgcaaacaaacataaaccaACACACAAGAACAGGAAGAGCTCTGACATCACTGTACTTCAGGAGAAAGTGGAAGTCAAACCTAATCAAAGCCTGAAACTGAATCTCTCtataaataacagaatatttagtcatttaaagaCTCTCGTGTGCACATCTGATCCTCACAGTAATGTCATCCTCCGGTGGTCCACTGACTGACACTCTTCAGTGCTCTATATGTCTGGAGGTGTTCACTGATCCAGTCTCGACTCCATGTGGACACAACTTCTGCAAGACCTGTCTGAATAAGTGCTGGGACAACAGCCAGACCTGCATCTGTCCATACTGTAAAGaaacattcaaacaaaaacCTGATCTCAAGACTAACACCACACTCCGAGAGCTTGCAGATCACTATAAACAGAAGAGTCCTGAGAAAACATCTGATGTTCTGTGTGACTTCTGTGAGGAGAGAAAGCTGAAAGCCCTGAAGTCGTGTGTGATGTGTCAGAGCTCTTACTGTCAAACTCATCTGGAGCGTCATTTCAGAGTGGCAGCTTTGAAGAAACACAAACTGATGGATCCTGTGAGTAATCTGGAGGACTATATTTGTCAGAAACATGAAAGACCTCTGGATCTGTTCTGTAGAGAtgatcagatgtgtgtgtgttcagtctgTACTGCTACAGACCACGAGAACCACAACACTGTTCCTATAGAAGAGGAGACCACAGAGAAGAAGACTGAACTGATGAAGACACAGAAAGATGTGCAGCAGATGATCCAAAACAAAATCAAGAAGATTCAAGACATCAAACGCTCAACAGAAGCCAGAAAAagaaacacagagcagGAGAAAGCAGCCCGTGTGGAGCTCTTCACTGATCTGATCCGCTCCATTGAGAGACTTCAGACCGAACTACTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAAGAGCGAGATCTGATTGAAGAGCTGGAACAGGAGATCTCTGAGCTAAAGATGAGAAACATTGAGCTGGAGCAGCTCTCACACACTAAAGATCACCTCCACCTCCTACAGATCTACTCATTCCTGAGCATCTCCAGAAACACCAGGAACTATCCTGAGATCATTGTGAAGACTCATGAGAGTCTGGAGACTCTGAGGAGAGCTCTGACTCAACTGAAGGACACTATAGACGAGAAACTCTCACAAACTGTCTCTTCAGAGCTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCTGATCTCATTCTGTCTGATGATGGAAAACAAGTGAGAGATGGAGACTTTACACAGAAACTCCCAGACAAACCTGAGAGATTTGATATATGTGTAAATGTCCTGGGAAAGGAGGGATTCTCCTCGGggagattttattttgaagtgcaGGTAAAAGAAAAGACTGAATGGATTTTAGGAGTGGCCAGAGAATCCATTCACAGGAAGGGACAGATCAAACTGAGTCCCAGAGATGGATACTGGACTTTGATTCTGAGGAATGGAGATGAATATAAAGCCTGTGAGGATTGtcgtgtctctctgtctctgagaGTGAAGCCACAGCGGGTTGGTGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTATGATGAGTCCAGCTCTCATATCTACTCTTTCACCGATCAGTCTTTCACTGAAAAACTCTATCCATTATTTAGCCCATCCTTAAACTATGGAGGTAAAAACTCAAATCCACTGATCATCACACCTGTcagttataataaatgaatttctCTTGATATGAAATACAAGATTATAgttatgatttttataaattgttatgtgctgctcttttttttcaatttttgaaaatgcaataatttgatatttgaatatataatatgcacattattaatgtaataatgcaaatgtttattatatttttcataaaacattatatttttcataaaacatgcCATTTTATTCCTCCATCTCAATGTGACAAAGTGAAATTtcctgtaaaaacagtaataccctgtcaaaaagctgaaaaaagacGAAGTAGATGAACACCCCAAAGCTTGACAGTCATTTTACCTCTTCATTGGTCAACATTTCATTCCACATTTTTGAAGCTGCTTTACGTCTGATGATTGTGTTAGATTACACGTAGAAGCATCTATTGTTTAAGATTCTTCTTCacttggttatttttttatttattttaattcttatttattttaaaaaaccctCTAACGTAAAACAGATTCTAGGAGCACAGTATAACTTCTATATACTTAGACTTATAAATAGATTAATTGTTTATTACTGATTTCATTAGTTTTATAGTCACAGATTATACTAAATGTAgtggaaatgtaaataaatgatacaaaaaagtatgctaaacaaatattaatccATTAAGAATTATATACTGAGCACTGAAATATCACTAAAATCTCTCGAATAATTCCAGTCTCTGTTGTTCAGTCGTATGTTAGTTTGAATTATAACCTCAATCTGCCTCAGAACCAAAGAAGAGAAATCTTTGATCTGTGACTCCGcccagcagacacacacacacacacatctgttgcTGCTTTCCTGAAGGTAAACAATGATTCGCTATAGAAACTTTACAGGTAATCTTACTAATTCTAAAACATCACTTTTGAAATAGTAACAAAGGAACCTTGTGttgtttaaaagcatattatGGGAGAGAGATTGACAAAGCGAGTGTGATTACCTCCATCTgaaacagcattcattttttagatcatattcacaataaaacattagtttgaATGTACGATAGGCTTATATAATCCTTTTACCTTTAAGATTTTGAGATCTTGTTTCATATCAGAAGTAACTTGCTCTGTCTTCTCTGTCTGTGTGATGTATTTTCATTGCGTAAGAATAAGATTTGTAGTGTGAGAGTGGCACCGCTTTTTGTCTTACAGGTTTAATTAACCCTTtaactgtctctctctgtccacTCTAGTCCACTTCAGTAGAAGAGATCAGAGCAAAagcccagctgtgtgtcttTGAAGAATGATGCTTCTATGATTCAGTCATCACAATTCAATAGTCAAGATACAAGGCCTGGTGTCAGGTATAAAATTTCTGTAAAGATTAAAGTTAAAGCCATGATACACAATAGATAAGACATCTGCATgcttattaactttttaactaATTTACTAACTAGTATTTTGCGGTCATGAGGTCCTCAACACACTTAGATCAAATCTGCAGAATAAgtttgagtgtctgtgtgagggaACAGCAACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGGCACAATCCAGGAGAGAAGCAATAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGAGAATAAGGACGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACATCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCTCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaGGACTATGAGAAGAACCTGACAGATGAAGACATGATCCTCAAACTGGGGAAGCTGGCTTTCCAGCAGCTAGTGAAAGGAAACTTCATCTTCTATGATGAAGACCTGTGAGAGTGTGGCATTGATGAGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTCGTTCATCTGAGCCTTCAGGGACATCTAGCAGCTCTATATGCACACCTCtcctttacaaaataaatgtttttgaccaaatcaaacaaaatatctaatttaagatttttaaccagaagaaatattattcattatctGAGCTGCATTAGAGTGCTTTAAAATGGCCTTAAAGAGTAAGAATGGACATCTGGATCTTTTCCTGAGATTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGGCTCTCTTAAGAAAACTACTGACCCAGACAGGAAGCTGCTCATACAACAAAGAGGAAACAGTTCAGTTCATCAAAGAGAAGATTAGGGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggTGATGATTCACTGAGATTCACTGTTATCTGAGATCTGGAGAAATAAGAGAAATCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGATATCAGAGCAGAAGATGGATGTTTTTGATCTAAAACAGTTTATTAGAAAACCTTGCACTCattgatcttaaaatatatcaatgacatttttttttatcttaaaagggagatcagtaatgtttttttttcctgaggcacatttattttaaaaaaatgtgctaaTTGAACAAACTAATCCTGGCGTAGTCTAAACCTGTCTGTCAAACCAGTCCTAGACGTGCTAGATTTAAATCAGCACAGCCAGCGTAtgatcaaacattttttttaacaagcatGCCTTTAAGGAAGCAAAGTCGTTCCTCTTGTTGGTAGATCCAGTGAGAGCTATTGGCTGTAGACAGCAGTAGAGGTGAAACAACTATGACAACATATATAATCCTGCCCACTGTTTGTGTATTTCACTGACTTTCCTGATGAGTGACTGACACGCTTACTTACGTCTCTTTCTGTTTGTATTCAGTCTGAGTTCGTTTGAATTAAAGCAATATAGAAATCAGGATGGCATGTATGATCACCCTAGATTAGCCATCTAAATCATTTTGACCTAGACAAGCACTTTCAGATAGCTGATCAGACTCTTAATCTAAtttaacacattcatttttgccattatttGCTATATCCAACAAAGTAAAGAAACTATTACAAGTGATCAATGTTGTGTTCGCTAAATACCATTAGTTTAGCAAAATCATCTTATGAAGTCAGTTGTTGATTTAGATATTCATAGATGCGATTACCTTCATACGTCACAGTAAACATGGTCACTTATAACATGGATTTGAAAATGCAACATGCATTAAGCATCTACCGTT
>XR_006250667.1
CCAAACTAAACCTGTTTTACTCTGTTGATGTAAACTGATTTGAAAGATGAGCCGGGTCTTGTATCAAATCtctgtgatcatgtgactgatGACGTTTGAGGTGATTCAAATCTTTAGTgtggtttaatttattataaagagACATTAGACTcaatgcaaacaaacataaaccaACACACAAGAACAGGAAGAGCTCTGACATCACTGTACTTCAGGAGAAAGTGGAAGTCAAACCTAATCAAAGCCTGAAACTGAATCTCTCtataaataacagaatatttagtcatttaaagaCTCTCGTGTGCACATCTGATCCTCACAGTAATGTCATCCTCCGGTGGTCCACTGACTGACACTCTTCAGTGCTCTATATGTCTGGAGGTGTTCACTGATCCAGTCTCGACTCCATGTGGACACAACTTCTGCAAGACCTGTCTGAATAAGTGCTGGGACAACAGCCAGACCTGCATCTGTCCATACTGTAAAGaaacattcaaacaaaaacCTGATCTCAAGACTAACACCACACTCCGAGAGCTTGCAGATCACTATAAACAGAAGAGTCCTGAGAAAACATCTGATGTTCTGTGTGACTTCTGTGAGGAGAGAAAGCTGAAAGCCCTGAAGTCGTGTGTGATGTGTCAGAGCTCTTACTGTCAAACTCATCTGGAGCGTCATTTCAGAGTGGCAGCTTTGAAGAAACACAAACTGATGGATCCTGTGAGTAATCTGGAGGACTATATTTGTCAGAAACATGAAAGACCTCTGGATCTGTTCTGTAGAGAtgatcagatgtgtgtgtgttcagtctgTACTGCTACAGACCACGAGAACCACAACACTGTTCCTATAGAAGAGGAGACCACAGAGAAGAAGACTGAACTGATGAAGACACAGAAAGATGTGCAGCAGATGATCCAAAACAAAATCAAGAAGATTCAAGACATCAAACGCTCAACAGAAGCCAGAAAAagaaacacagagcagGAGAAAGCAGCCCGTGTGGAGCTCTTCACTGATCTGATCCGCTCCATTGAGAGACTTCAGACCGAACTACTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAAGAGCGAGATCTGATTGAAGAGCTGGAACAGGAGATCTCTGAGCTAAAGATGAGAAACATTGAGCTGGAGCAGCTCTCACACACTAAAGATCACCTCCACCTCCTACAGATCTACTCATTCCTGAGCATCTCCAGAAACACCAGGAACTATCCTGAGATCATTGTGAAGACTCATGAGAGTCTGGAGACTCTGAGGAGAGCTCTGACTCAACTGAAGGACACTATAGACGAGAAACTCTCACAAACTGTCTCTTCAGAGCTGAAGTGGATGCAGCAGTATGCAGTGGATGTGACTCTGGATCCTGATACAGCTCATCCTGATCTCATTCTGTCTGATGATGGAAAACAAGTGAGAGATGGAGACTTTACACAGAAACTCCCAGACAAACCTGAGAGATTTGATATATGTGTAAATGTCCTGGGAAAGGAGGGATTCTCCTCGGggagattttattttgaagtgcaGGTAAAAGAAAAGACTGAATGGATTTTAGGAGTGGCCAGAGAATCCATTCACAGGAAGGGACAGATCAAACTGAGTCCCAGAGATGGATACTGGACTTTGATTCTGAGGAATGGAGATGAATATAAAGCCTGTGAGGATTGtcgtgtctctctgtctctgagaGTGAAGCCACAGCGGGTTGGTGTGTTTGTGGATTATGACGAGGGTCTGGTCTCCTTTTATGATGAGTCCAGCTCTCATATCTACTCTTTCACCGATCAGTCTTTCACTGAAAAACTCTATCCATTATTTAGCCCATCCTTAAACTATGGAGGTAAAAACTCAAATCCACTGATCATCACACCTGTcagttataataaatgaatttctCTTGATATGAAATACAAGATTATAgttatgatttttataaattgttatgtgctgctcttttttttcaatttttgaaaatgcaataatttgatatttgaatatataatatgcacattattaatgtaataatgcaaatgtttattatatttttcataaaacattatatttttcataaaacatgcCATTTTATTCCTCCATCTCAATGTGACAAAGTGAAATTtcctgtaaaaacagtaataccctgtcaaaaagctgaaaaaagacGAAGTAGATGAACACCCCAAAGCTTGACAGTCATTTTACCTCTTCATTGGTCAACATTTCATTCCACATTTTTGAAGCTGCTTTACGTCTGATGATTGTGTTAGATTACACGTAGAAGCATCTATTGTTTAAGATTCTTCTTCacttggttatttttttatttattttaattcttatttattttaaaaaaccctCTAACGTAAAACAGATTCTAGGAGCACAGTATAACTTCTATATACTTAGACTTATAAATAGATTAATTGTTTATTACTGATTTCATTAGTTTTATAGTCACAGATTATACTAAATGTAgtggaaatgtaaataaatgatacaaaaaagtatgctaaacaaatattaatccATTAAGAATTATATACTGAGCACTGAAATATCACTAAAATCTCTCGAATAATTCCAGTCTCTGTTGTTCAGTCGTATGTTAGTTTGAATTATAACCTCAATCTGCCTCAGAACCAAAGAAGAGAAATCTTTGATCTGTGACTCCGcccagcagacacacacacacacacatctgttgcTGCTTTCCTGAAGGTAAACAATGATTCGCTATAGAAACTTTACAGGTAATCTTACTAATTCTAAAACATCACTTTTGAAATAGTAACAAAGGAACCTTGTGttgtttaaaagcatattatGGGAGAGAGATTGACAAAGCGAGTGTGATTACCTCCATCTgaaacagcattcattttttagatcatattcacaataaaacattagtttgaATGTACGATAGGCTTATATAATCCTTTTACCTTTAAGATTTTGAGATCTTGTTTCATATCAGAAGTAACTTGCTCTGTCTTCTCTGTCTGTGTGATGTATTTTCATTGCGTAAGAATAAGATTTGTAGTGTGAGAGTGGCACCGCTTTTTGTCTTACAGGTTTAATTAACCCTTtaactgtctctctctgtccacTCTAGTCCACTTCAGTAGAAGAGATCAGAGCAAAagcccagctgtgtgtcttTGAAGAATGATGCTTCTATGATTCAGTCATCACAATTCAATAGTCAAGATACAAGGCCTGGTGTCAGTCCAACACATCTGTGCAGTTTGCTGATGTGGCATGCCAGACAGACAAACCAACTACCCGTTCATATGGTACTCAGCTCTCGACAAAGACTCTCAGCTCTCCCTTCAGGAGCAT

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X2

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12803 MEFV; pyrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237292.1 True 5461 mRNA 0.39 7 22661826 22673771
XR_006250667.1 False 3375 transcript 0.39 8 22661826 22682712

Neighbor

gene id symbol gene type direction distance location
LOC122342965 NA coding upstream 39940 22613115 ~ 22621886 (+)
LOC122343138 si:ch211-133h13.1,LOC107574515,LOC107574820 coding upstream 100063 22548617 ~ 22561763 (+)
LOC122343018 LOC107705900 coding upstream 215548 22434054 ~ 22446278 (+)
LOC122342312 NA coding upstream 256004 22404053 ~ 22405822 (+)
LOC122343041 zbtb24,LOC107736039 coding upstream 554369 22105236 ~ 22107457 (+)
LOC122343101 NA coding downstream 2990 22685702 ~ 22689679 (+)
LOC122342996 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding downstream 13088 22695800 ~ 22706494 (+)
LOC122342997 LOC107572920,LOC107713771,LOC107575181,LOC107684374,LOC107677802 coding downstream 57248 22739960 ~ 22748620 (+)
LOC122343008 LOC107575457 coding downstream 485443 23168155 ~ 23183546 (+)
LOC122343131 NA coding downstream 543499 23226211 ~ 23229732 (+)
LOC122343204 NA non-coding upstream 110476 22550101 ~ 22551350 (+)
LOC122343169 NA non-coding upstream 117995 22542511 ~ 22543831 (+)
LOC122343193 NA non-coding upstream 120341 22540384 ~ 22541485 (+)
G30528 LOC107574372,LOC107655767,LOC107710146,LOC107574376,LOC107571418,LOC107574588 non-coding upstream 128794 22532415 ~ 22533032 (+)
G30526 NA non-coding upstream 155634 22505255 ~ 22506192 (+)
G30598 NA non-coding downstream 121326 22804038 ~ 23246017 (+)
G30599 LOC107561645 non-coding downstream 125276 22807988 ~ 23249868 (+)
G30607 NA non-coding downstream 170769 22853481 ~ 22869703 (+)
G30609 NA non-coding downstream 175578 22858290 ~ 22861570 (+)
G30624 NA non-coding downstream 324262 23006974 ~ 23126523 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other upstream 356678 22296897 ~ 22305148 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other upstream 429902 22231470 ~ 22231924 (+)
LOC122342301 LOC107563870,LOC107718524,LOC107683800,LOC107564010,LOC107563545 other upstream 900645 21368643 ~ 21761181 (+)
G30115 NA other upstream 1020070 21639540 ~ 21641756 (+)
G30119 NA other upstream 1031706 21388193 ~ 21630120 (+)
LOC122342317 NA other downstream 95271 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 446394 23129106 ~ 23130189 (+)
G30632 NA other downstream 474847 23157559 ~ 23159756 (+)
LOC122342321 LOC107741609,LOC107575420,LOC107710255 other downstream 480983 23163695 ~ 23168007 (+)
LOC122342976 usp15,LOC107685889 other downstream 1434577 24117289 ~ 24131487 (+)

Expression


Co-expression Network