LOC122343020 (LOC107667978,LOC107741456,LOC107575631,LOC107563545)


Basic Information

Item Value
gene id LOC122343020
gene name LOC107667978,LOC107741456,LOC107575631,LOC107563545
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21673802 ~ 21809079 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237293.1
CAGGACAGGTGCGTTTTATTTTGCTCACTGTACCGTAAATGAATTTATCATAAACACAGGGACAActgaatcaaatgtaaaatgactgtaaaataattcaatgatAGCAAACTCTCGAATCTGCTTCTGTGGCGtgagaaaaaatgtttgagTGTGGGCTTCCGTCAGGATCTGTCGTCGGGGAAAAGTTCGTAATTCGTTCGGAGACTGTTATATTCACCGAAATATAAGGCTCAAAGCGTTTCGTGAcgattcttgttttgttttgtgttattatttaaagtgcatctAAGGTTTTTTTGATCCCGCGAGTCAACACTTCAATATGCCGTGCGTGAAGCTGACCTAGCGGCCATAGAGACAGTTATATTCAGGAAGTCTTTGTGAAGTAACCAAACTTCTTGGGGCGTGAGGGACTGAGGAGAGTCGCGTGCTTCGTCGCTGGAAGTGGATCGGTCGCGTTCATCTCGTGTTCCCGACGGATCGTGACAGGACTCGTGAGTTGGTGAAGGACGATGGCGTCTGTTAAAAGCTGCTCTTGGACCAACTGATGGAGCTGGCAGAAGATGAACTGAAGAAATTTCATTGGCATTTAGTGAATTTTTATCAAAAGTGCATATCAAAGTCTGAATTGAAAAATGCAGATAGATGTGACACAGTAGATAAGATGGTGATGTGTTTTGGACCAGATGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGCAGAATGAACACAAGCaagcTCAGACTGAGGACAATATGAAGACATCTGTCTCTGTTAGAGAGCtccaaaatgtcttgaaaactcacaaaaacaacatgaagatgaagacaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTCAAgagcaaaaaaacactgaacaaaccaatcaaatgcaatgatatatttactgaactGAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtttgtgcacaagttcatcctggactgggtAGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTGATTAAAGAAAGAGAGGTCAGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGATGTTCCTGGAGAAATCAAAGttatatacagaatataaacttgtgtttatttttgatggacttgatgagAGTCGACTGCCTTTGAATTTTGAAAGTGATACATTGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTTGTCTGGGTCACATCACGACcggcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAAGTGCAAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATCAGAGTCTGTCCTCCAGAATCATCTCCCACATTAAGACGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCAAACAACAAGACGGAGAATGTTCAGAGCACTTACTTTTAAATAGAGAGATGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTCAGATCTTTAAGAAGGAAGTTGGACTTTATAAGAGAAAGGTCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCtgttacctgaaaaaaaacaagcaagagcttatgtttttctttgagaAATTCACAAACTAA
>XM_043237294.1
CAGGACAGGTGCGTTTTATTTTGCTCACTGTACCGTAAATGAATTTATCATAAACACAGGGACAActgaatcaaatgtaaaatgactgtaaaataattcaatgatAGCAAACTCTCGAATCTGCTTCTGTGGCGtgagaaaaaatgtttgagTGTGGGCTTCCGTCAGGATCTGTCGTCGGGGAAAAGTTCGTAATTCGTTCGGAGACTGTTATATTCACCGAAATATAAGGCTCAAAGCGTTTCGTGAcgattcttgttttgttttgtgttattatttaaagtgcatctAAGGTTTTTTTGATCCCGCGAGTCAACACTTCAATATGCCGTGCGTGAAGCTGACCTAGCGGCCATAGAGACAGTTATATTCAGGAAGTCTTTGTGAAGTAACCAAACTTCTTGGGGCGTGAGGGACTGAGGAGAGTCGCGTGCTTCGTCGCTGGAAGTGGATCGGTCGCGTTCATCTCGTGTTCCCGACGGATCGTGACAGGACTCGTGAGTTGGTGAAGGACGATGGCGTCTGTTAAAAGCTGCTCTTGGACCAACTGATGGAGCTGGCAGAAGATGAACTGAAGAAATTTCATTGGCATTTAGTGAATTTTTATCAAAAATGAAGCTGTGAAGGTCATGGTAGACGTCCTGAGAAAGATAAACCAAAATGATCTGGCTGAACAGTTGCAGAATGAACACAAGCaagcTCAGACTGAGGACAATATGAAGACATCTGTCTCTGTTAGAGAGCtccaaaatgtcttgaaaactcacaaaaacaacatgaagatgaagacaaaatacatttttgagggCAACAAAGAAACTGACACAGATCTGAAAGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTAAATCAGGAACATGAGATTCTGAAGATTGATGATGCTTTCAAgagcaaaaaaacactgaacaaaccaatcaaatgcaatgatatatttactgaactGAGGAAAAACAATGAGTTAAAGATTGTGTTGACCAAAggagtcgctggcattggaaaaactgtgtttgtgcacaagttcatcctggactgggtAGAAGGAGAATCTAATCAGGATATAGACTGTGTGTTCCTgcttccattcagagagatCAATGTGATTAAAGAAAGAGAGGTCAGTCTCCATGAGTTTCTGCTGAAATTTAATCCTGAATTGATGTTCCTGGAGAAATCAAAGttatatacagaatataaacttgtgtttatttttgatggacttgatgagAGTCGACTGCCTTTGAATTTTGAAAGTGATACATTGAACACTGTTGAGGAAAGATCATCTGTAGATGTGCTGTTTACAAGTCTGGTCAAAGGTAAACTGCTTCCATCAGCTCTTGTCTGGGTCACATCACGACcggcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAAGTGCAAGGATTCACTGACCTACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATCAGAGTCTGTCCTCCAGAATCATCTCCCACATTAAGACGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCAAACAACAAGACGGAGAATGTTCAGAGCACTTACTTTTAAATAGAGAGATGATTCTGAAGTTAGCCAAGCTAGCGTTTGAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTCAGATCTTTAAGAAGGAAGTTGGACTTTATAAGAGAAAGGTCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCtgttacctgaaaaaaaacaagcaagagcttatgtttttctttgagaAATTCACAAACTAA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237293.1 True 2125 mRNA 0.41 4 21673802 21809079
XM_043237294.1 False 2048 mRNA 0.41 5 21673802 21809079

Neighbor

gene id symbol gene type direction distance location
LOC122343024 NA coding upstream 23624 21644319 ~ 21650178 (+)
LOC122343031 LOC107563545,LOC107564010 coding upstream 220940 21449517 ~ 21452862 (+)
LOC122342295 LOC107573707,LOC107575631,LOC107689603,LOC107741456,LOC107667978 coding upstream 224292 21447240 ~ 21449510 (+)
LOC122342293 NA coding upstream 273654 21398817 ~ 21400148 (+)
LOC122343117 NA coding upstream 294163 21377538 ~ 21379639 (+)
LOC122343035 NA coding downstream 77 21809156 ~ 21814437 (+)
LOC122342305 LOC107697548,LOC107574116,LOC107758214 coding downstream 32102 21841181 ~ 21842230 (+)
LOC122343067 NA coding downstream 294239 22103318 ~ 22104932 (+)
LOC122343041 zbtb24,LOC107736039 coding downstream 296157 22105236 ~ 22107457 (+)
LOC122342312 NA coding downstream 594974 22404053 ~ 22405822 (+)
G30133 LOC107749047,LOC107571854,LOC107728228,LOC107669894 non-coding upstream 146791 21485712 ~ 21527011 (+)
G30132 NA non-coding upstream 151549 21479557 ~ 21522253 (+)
G30136 NA non-coding upstream 174288 21498864 ~ 21499514 (+)
G30134 NA non-coding upstream 175421 21496823 ~ 21498381 (+)
G30110 LOC107718524,LOC107563870 non-coding upstream 299265 21369422 ~ 21374537 (+)
G30205 NA non-coding downstream 332265 22141344 ~ 22255433 (+)
G30206 NA non-coding downstream 353559 22162638 ~ 22240294 (+)
G30212 NA non-coding downstream 365876 22174955 ~ 22252519 (+)
G30226 NA non-coding downstream 441356 22250435 ~ 22251792 (+)
G30233 NA non-coding downstream 464732 22273811 ~ 22280970 (+)
G30115 NA other upstream 32046 21639540 ~ 21641756 (+)
G30119 NA other upstream 43682 21388193 ~ 21630120 (+)
LOC122342286 LOC107578117 other upstream 499462 21169193 ~ 21174340 (+)
G30058 NA other upstream 530971 21118562 ~ 21142831 (+)
G29961 NA other upstream 966956 20696672 ~ 20706846 (+)
G30218 LOC106676322,LOC106676931,LOC106676323,LOC107752219,LOC106675762,LOC106674878,LOC106676183 other downstream 422391 22231470 ~ 22231924 (+)
LOC122342310 LOC107685875,LOC107671223,LOC107749047,LOC107728228,LOC107576424 other downstream 487818 22296897 ~ 22305148 (+)
LOC122343019 LOC107705900 other downstream 852747 22661826 ~ 22682712 (+)
LOC122342317 NA other downstream 968904 22777983 ~ 22780139 (+)
G30636 LOC107575420,LOC107667978,LOC107563545,LOC107741456 other downstream 1320027 23129106 ~ 23130189 (+)

Expression


Co-expression Network