tbx5a (tbx5,LOC107670381,LOC107729059,LOC107745406,LOC107688016)



Basic Information


Item Value
gene id tbx5a
gene name tbx5,LOC107670381,LOC107729059,LOC107745406,LOC107688016
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18028498 ~ 18041948 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043237295.1
CGCTCGGGGCTTGACCATTAGAGAAACTCACAGAGAGAGGGACGGATAAAGGAAGAGAGGGAGGAGGTGACCGCGCTTCTCTTCTCCAGGAATACCGCGCAGAAGAACACGGGCTGTGGCGCGCGCAGAGAGTCGTGTTTTTCCTCGCTGGACTCGCATGGACGCTCGCCGGGGCAGGACTCCCGTGGGGTCACGGAGCACGGGCTCTTGAGCTGCACGCCGGGGACATATCTGACAGCGAGCGCTTCGGGCAGTTTCGAGGATTCGTGCGACTCTCTTTTGCGCCGGAATTCAAGGCCTCGCTGTGGATCACAGACATGGCGGACAGTGAAGACACCTTTCGGCTCCAAAACTCTCCCAGTGACACAGACTCAAAAGATTTACCAAACGATgggaaaacagagaaacagagcgGATCTGTTAATAAATCCCCATCATCACAGACTACCTACATTCAACAGGGAATGGAAGGGATAAAGGTTTACTTGCACGAGAGAGAGTTATGGACGAAGTTTCATGAAGTGGGAACCGAAATGATCATCACTAAAGCCGGGAGGCGGATGTTCCCAAGCTTCAAAGTGAAGGTCACTGGGTTGAACCCAAAAACCAAATACATTCTTCTGATGGATGTCGTGCCAGCCGACGACCACCGATATAAATTCGCCGATAACAAATGGTCTGTGACGGGGAAAGCGGAGCCTGCGATGCCGGGGAGGCTGTACGTTCATCCCGATTCTCCGGCCACCGGCGCGCACTGGATGAGACAACTGGTGTCTTTCCAGAAGCTGAAACTAACCAACAACCACCTGGATCCCTTCGGACACATTATCCTGAATTCCATGCATAAATACCAGCCCCGGATTCACATCGTGAAAGCAGACGAAAATAACGGCTTCGGCTCCAAAAACACGGCTTTCTGCACACACGTGTTCCCGGAGACGGCCTTCATCGCGGTCACGTCCTACCAGAACCACAAGATCACCCAGCTGAAGATCGAGAACAACCCCTTCGCAAAAGGCTTTCGCGGAAGTGACGACATGGAGCTCCATCGCATGTCGAGAATGCAGAGCACCAAGGAGTATCCGGTGGTCCCTCGCAGTACCGTACGCCAGCGGGTCGGCACCAGCCAGAGCCCGTTCTCCGGTGACGTCCAGGGCCTGTCGGCCCCCAGCGGCATGAGCTCTCAGTACTCCTGTGAGAACGGGGTCACCAGCACATCTCAGGATCTGCTGCCTCAGTCCAGCTCTTATCCTCTGCCCCACGAACACAGCCAGGACTATCACTGCATCAAGAGGAAAGTTGAGGACGACTGTCACGCGGGAGAACACTCGTACAAGAAGACCTACGTGGAAAGCTCTTCCAGCGAGGACGATCACTACTATCGGCCCGTGAGCTACTCTCAGTCCCTGGGTCTCAGCGGCGCCCCCTACAGGCCCGAGTCCGGCCAGCGGCAGGCCTGCATGTACGCCAGCGCGTCTCAGTCCAGCGAGCCCGTGCCCAGCCTGGAGGACATCAGCTGTAACACCTGGGCAGGCGTCTCTCCGTACGCCGGCTGCTCGGTGACCGCCATGCAGCAGATGGAGCGACTGCCCTACCAGCACTTCTCCGCTCACTTCACCTCAGGACCTCTGGTGTCCAGACTGAGCGCCGGCCATGCCTCGCCGCAGCTGGGAGACGCCCACAGCATGTACCAGGGATCCATGGCCCATCAGCCTCTGGGCCGCCAGTGCAGTCCAAGCGCGGGGATCCAGTCTCCGACCGCCGGCCTGCAAGGAAACGAGTACTTGTACACTCACAGTATACCTCGCACGCTGTCTCCGCACCAGTACCACGCCGTGCACAGCGTCAGCATCATGCCCGACTGGAACGAGGGCAGCTAACTGGATTCTCTCGTGTAGGGCCCCGACGCGGAGGAGAGGCGCTTTCCTGCGTATTTATAACTTTGCGGCGTGGGCGACTTGTGTCGTAAACAGTTTGTGGCCGGTTCGGCTGGTCGAGGCAGCAGTGAACGTCTCAGTGTTTGAGCAGGACGGTATCGTGAGACGAGGAGAGACGCCGACTGTATATCAGGGACAAAGAACTTCTCCCCTTCCAGGCGAGGACAAATGCAGGATGCCAACTGTTTTATCGacaaaacttttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaaggtgTCAAGAGTAAAACCAATccagttttataatattttttctaggGGCGCAAAAAGATTAATcgcaatcaaaataaaagtgcacgtttacatattatgtgtgtgtatactgtgtatatttattatttacatatacacatacgcatacatatatattatttatatcatat

Function


symbol description
tbx5 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including embryonic forelimb morphogenesis; negative regulation of cardiac muscle cell proliferation; and positive regulation of cardioblast differentiation. Acts upstream of or within forelimb morphogenesis. Located in cytoplasm and nucleus. Part of protein-DNA complex. Implicated in Holt-Oram syndrome.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K10179 TBX5, HOS; T-box protein 5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043237295.1 True 2361 mRNA 0.54 9 18028498 18041948

Neighbor


gene id symbol gene type direction distance location
rab14l Rab14,rab14,LOC105889591,LOC107566859,LOC101069277,LOC103390174,LOC103045876,LOC107670386,LOC107674917,LOC107729136 coding downstream 58930 17963589 ~ 17969568 (-)
spra LOC107597947 coding downstream 96079 17927787 ~ 17932419 (-)
smyd1a smyd1,LOC107745315,LOC107597934 coding downstream 101801 17915571 ~ 17926697 (-)
thnsl2 thnsl2,LOC107597948,LOC107578849,LOC107735618 coding downstream 116066 17903576 ~ 17912432 (-)
dqx1 dqx1,LOC107597950 coding downstream 129631 17884719 ~ 17898867 (-)
tbx3a LOC107742157,LOC107597930,LOC107687999,LOC107728866,LOC107566860,LOC107670392 coding upstream 17377 18059325 ~ 18067165 (-)
LOC122343062 NA coding upstream 151361 18193309 ~ 18196521 (-)
mtfp1 mtfp1,LOC107565646,LOC107566856 coding upstream 157102 18199050 ~ 18202131 (-)
wbp1 LOC107670394,LOC107728527,LOC106563291 coding upstream 171599 18213547 ~ 18218528 (-)
LOC122343150 LOC107570416,LOC107749047 coding upstream 333379 18375327 ~ 18431434 (-)
G29487 NA non-coding downstream 42680 17985013 ~ 17985818 (-)
G29457 NA non-coding downstream 87709 17873152 ~ 17940789 (-)
LOC122343170 NA non-coding downstream 198555 17828586 ~ 17829943 (-)
G29445 NA non-coding downstream 204234 17823219 ~ 17824264 (-)
G29442 LOC107599601 non-coding downstream 206028 17819360 ~ 17822470 (-)
G29656 NA non-coding upstream 339042 18380990 ~ 18409895 (-)
G29662 NA non-coding upstream 393697 18435645 ~ 18465837 (-)
G29663 NA non-coding upstream 394619 18436567 ~ 18461313 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding upstream 514552 18556500 ~ 18559281 (-)
G29682 trim24,LOC107562152,LOC107690747,LOC107747644 non-coding upstream 521206 18563154 ~ 18564445 (-)
G29473 NA other downstream 48576 17970605 ~ 17979922 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 283955 17734606 ~ 17744543 (-)
G29417 NA other downstream 292224 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 389756 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 906369 17118343 ~ 17122129 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 366612 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 613296 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 651054 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 856859 18898807 ~ 18902552 (-)
LOC122343130 NA other upstream 874378 18916326 ~ 18917533 (-)

Expression



Co-expression Network