smyd1a (smyd1,LOC107745315,LOC107597934)


Basic Information

Item Value
gene id smyd1a
gene name smyd1,LOC107745315,LOC107597934
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17915571 ~ 17926697 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237302.1
GGCGAGCCGCGGAGCCGTCAGTCCCCGTCCGAGGCCGAGAGAGTCAGCATGACCGTGGAGAAGATGGATCCCGTGGAGGTGTTTGCGGCCGGGGAGAAAGGCCGCGGCCTCAGGGTCACTAAAGAGCTGTCGTCTGGAGAAGTGGTGTTCGCCGAGGCCAGCTTCGCCGCGGTCGTGTTCGACAGcctCTCTCTGCAGGTGTGTCACAGCTGTTTCCGGCGTCAGGTGACCCCTCACCGCTGTGCTCAGTGTAAGTTCGCACACTATTGTGATCGTACGTGTCAGCGCGCCGCCTGGGACGAACACAAGCAGGAGTGCTCCGCCATCAGGAAGACAGGGACAGCGCCCAATGAGAACGTGCGCCTGGTGGCTCGGATCCTGTGGCGTATTCAGAAGGACACGGGCCTGGTCTCTGACGCTCAGCTCACGACCCTTGACCTCCTGGAGGATCACCTGTCCAAAACGTCCCCCGAAGACCTGAAAGAGCTCAAAGTGGATGTGCAGAACTTCTACAACTACTGGCCTAAAAAGAGCAAACCCGTGGGAGAGGACTACGTGGCGCATCTCCTCGGCGTGATCAACTGCAATGGCTTCACGCTGAGTGACCAGAGGGGTCTGCAGGCCGTGGGCGTGGGGCTCTTCCCTAACCTGTGTCTGGTCAACCACGACTGCTGGCCTAACTGCACCGTCATCCTCAACCCTGGCAATCAGACGGCTCTGGACGCCTCGCTGCACTCCACGAGGAGGATCGAGCTGAGGGCTCTGGAGAAGATCTCTGAAGGAGAAGAGCTGACCATCAGCTACGTGGACTTCCTCAACGTCTCCAAGGAGCGCCAGCAGCTGCTCAAGAAGAGGTATTACTTCGACTGTAAGTGTGAGCACTGCTCGAGCGCCACCGAAGACCAGCTGATGACGGCCGTCAGAGACAGCGACGGGAACAAGccgTCTGCTGACGTGGTGAAGGCAGTGACAGATTTCAGTCTTCAGGCTCTGGTTAAGATCGAAGAGGCTCGTACTGAAGGAAACTTCCAGGAGGTGGTGAAGCTCTGCCGTGAGTGTCTGGAGAAGCAGGGTCCTGTGTTTGGAGACACAAACCTTCATCTGCTGCGCGTCCTCAGCATCGCCAGCGAGGTCCTGTCCTTCATGCATCAGTTCAGCGAAGCGTCGGGATACACCCAGCGTGTTCTGGACGGATACACGAAACTCTATCATCCCAATAACGCTCAGCTGGGCATGGCCATGATGAGAGCGGGCGTCACACACTGGCACGCCGGACAGATCGAGAGCGCTCACTCGCTGGTCTGCCGCGCTTACGCCATCCTCATCATCACACACGGAGCTCATCACCCCATCACCAAAGACCTGGAGgcgaTGCGGACGCAGACGGAGATGGAGCTGCGCTTGTTCAAGCAGAACGAGCCGGTCTATCGCAGCATGAGAGAAGCTGTGCTCAGCGACAAGCCTCTGATGATGTCTGGAGAACCAATCAAAGCCTCCTcatgaagagtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
smyd1 Predicted to enable histone-lysine N-methyltransferase activity. Involved in positive regulation of myoblast differentiation and positive regulation of myotube differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

NR:

description
PREDICTED: histone-lysine N-methyltransferase SMYD1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237302.1 True 1530 mRNA 0.58 10 17915571 17926697

Neighbor

gene id symbol gene type direction distance location
thnsl2 thnsl2,LOC107597948,LOC107578849,LOC107735618 coding downstream 3139 17903576 ~ 17912432 (-)
dqx1 dqx1,LOC107597950 coding downstream 16704 17884719 ~ 17898867 (-)
LOC122342984 LOC100150651,LOC107755845,LOC107668749,LOC107599606 coding downstream 34775 17854701 ~ 17880796 (-)
ckap2l NA coding downstream 64422 17840064 ~ 17851149 (-)
LOC122343038 LOC107698808,LOC107743352 coding downstream 184174 17728522 ~ 17731397 (-)
spra LOC107597947 coding upstream 1090 17927787 ~ 17932419 (-)
rab14l Rab14,rab14,LOC105889591,LOC107566859,LOC101069277,LOC103390174,LOC103045876,LOC107670386,LOC107674917,LOC107729136 coding upstream 36892 17963589 ~ 17969568 (-)
tbx5a tbx5,LOC107670381,LOC107729059,LOC107745406,LOC107688016 coding upstream 101801 18028498 ~ 18041948 (-)
tbx3a LOC107742157,LOC107597930,LOC107687999,LOC107728866,LOC107566860,LOC107670392 coding upstream 132628 18059325 ~ 18067165 (-)
LOC122343062 NA coding upstream 266612 18193309 ~ 18196521 (-)
LOC122343170 NA non-coding downstream 85628 17828586 ~ 17829943 (-)
G29445 NA non-coding downstream 91307 17823219 ~ 17824264 (-)
G29442 LOC107599601 non-coding downstream 93101 17819360 ~ 17822470 (-)
G29440 NA non-coding downstream 97638 17817562 ~ 17817933 (-)
G29425 NA non-coding downstream 110162 17796072 ~ 17805409 (-)
G29487 NA non-coding upstream 58316 17985013 ~ 17985818 (-)
G29656 NA non-coding upstream 454293 18380990 ~ 18409895 (-)
G29662 NA non-coding upstream 508948 18435645 ~ 18465837 (-)
G29663 NA non-coding upstream 509870 18436567 ~ 18461313 (-)
G29680 LOC107747644,LOC107709964,LOC107690747,LOC107687572,LOC107562152 non-coding upstream 629803 18556500 ~ 18559281 (-)
LOC122342228 scgn,LOC107693759,LOC107757885,LOC107669120,LOC107714763,LOC107747999,LOC107663245 other downstream 171028 17734606 ~ 17744543 (-)
G29417 NA other downstream 179297 17735350 ~ 17736274 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other downstream 276829 17637023 ~ 17638742 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other downstream 793442 17118343 ~ 17122129 (-)
G29135 NA other downstream 897748 17006927 ~ 17017823 (-)
G29473 NA other upstream 43908 17970605 ~ 17979922 (-)
G29653 LOC107663329,LOC107575399,LOC107749046,LOC107758217,LOC107576964,LOC107665206,LOC107571858,LOC107671223,LOC107576424 other upstream 481863 18408560 ~ 18428343 (-)
LOC122343054 NA other upstream 728547 18655244 ~ 18661653 (-)
LOC122342944 LOC107581743 other upstream 766305 18693002 ~ 18735640 (-)
LOC122343082 NA other upstream 972110 18898807 ~ 18902552 (-)

Expression


Co-expression Network