LOC122343027 (LOC107685875,LOC107749047,LOC107671223,LOC107570416,LOC107728228,LOC107655115)


Basic Information

Item Value
gene id LOC122343027
gene name LOC107685875,LOC107749047,LOC107671223,LOC107570416,LOC107728228,LOC107655115
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21484781 ~ 21487205 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237304.1
gctggcattggaaaaacagtctctgtgcagaagttcgtCCTGGACTGGGCCGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacATGATGAAGGACAAAACACTCAGTCGTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatggaaatattcagtgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTAATATATCTGAGTCAGCCTCCGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctttaatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGACTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGTCTCttcatcatgtgtcacatcccaatcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaGGACTATGAGAAGAACCTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTTCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGACATTGATGAGACAGAAGCATCAGTTTACTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTCATTCATCTGAGTCTTCAGGAACATCTAGCAGCTCTACATGCACACCTCTCCTTAACAATAAAGAAGATAAATGTGTTTGACCAAATcaaacaaaattatttctttaatgtctTACACATATTTAGACCGTTATCTAAGCTGCATCAGAGAGCTGTGAATGAGGCTCTACAGAGTAAGAATGGACATCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCCTACAACAAAGAGGAAACAGTTCAGTTCATCAAAAAGAAGATCAGGGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATATGGAGAAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATATTTTTGATCTAAAAGAGTTTATTGGACAACAACATACAGTAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATACAGATCAGTTTGttttacaatcctcaaactcaaacatcctgaaagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctgtgAAGGACTGAAGGgtccaaactgtcatctggagattctgaggtaaatgCTTTCGATAAAACACATAAGTAATGCATGTTTatcaaatttttataaatatccaGACcagctttgtttatttatatgtttatttatacatcattaCCATGTAGTACCGTACCTTTTGTTGAGAAATGATAAAAGGTTGCACCACAACAATTATACGAACTTGCACAAAAgctctgaaatatattttaagtttctcCTCTGCCATGGACTTCTTGAGTTTATCCTCTGCACTGCTGTATGCTTGGTGTGACCGTGTCAAGAATCT

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237304.1 True 1891 mRNA 0.42 2 21484781 21487205

Neighbor

gene id symbol gene type direction distance location
LOC122342292 NA coding downstream 101590 21381792 ~ 21383191 (-)
LOC122343094 NA coding downstream 162686 21318814 ~ 21322095 (-)
LOC122342290 LOC107561645,LOC107741456 coding downstream 170811 21309532 ~ 21313970 (-)
LOC122342980 LOC107571898 coding downstream 196459 21282287 ~ 21288322 (-)
LOC122342288 LOC107667978,LOC107563545 coding downstream 208684 21250399 ~ 21276097 (-)
LOC122342973 LOC107685875,LOC107749047,LOC107728228 coding upstream 30268 21517473 ~ 21528946 (-)
LOC122343039 NA coding upstream 50117 21537322 ~ 21542289 (-)
LOC122342299 NA coding upstream 142275 21629480 ~ 21630158 (-)
LOC122343099 NA coding upstream 164159 21651364 ~ 21653997 (-)
LOC122343036 LOC107563870,LOC107718524 coding upstream 168697 21655902 ~ 21662833 (-)
G30343 NA non-coding downstream 358710 21117815 ~ 21126071 (-)
G30301 LOC107707774,LOC107566977,LOC107677745 non-coding downstream 416593 21065914 ~ 21068188 (-)
G30317 LOC107561645,LOC107575420,LOC107747810,LOC107575457,LOC107741456,LOC107667978 non-coding downstream 510716 20972276 ~ 20974065 (-)
G30293 NA non-coding downstream 747621 20736146 ~ 20737160 (-)
G30286 NA non-coding downstream 806917 20676260 ~ 20677864 (-)
G30406 NA non-coding upstream 5059 21492264 ~ 21492907 (-)
G30408 NA non-coding upstream 12433 21499638 ~ 21499998 (-)
LOC122343179 LOC107667978,LOC107563545,LOC107741456 non-coding upstream 181605 21668810 ~ 21673424 (-)
G30425 NA non-coding upstream 186518 21673723 ~ 21676131 (-)
G30423 LOC107575420,LOC107667978,LOC107563545 non-coding upstream 189671 21676876 ~ 21809618 (-)
G30395 NA other downstream 98344 21383469 ~ 21386437 (-)
LOC122343135 NA other downstream 147900 21327615 ~ 21336881 (-)
LOC122343113 LOC107749046 other downstream 205738 21276222 ~ 21279043 (-)
LOC122343098 NA other downstream 431056 21048857 ~ 21053725 (-)
LOC122343123 NA other downstream 620375 20858423 ~ 20864406 (-)
G30396 NA other upstream 142412 21629617 ~ 21776806 (-)
G30372 NA other upstream 249886 21737091 ~ 21740330 (-)
LOC122342302 NA other upstream 281919 21769124 ~ 21772399 (-)
G30450 NA other upstream 641249 22128454 ~ 22245160 (-)
G30457 NA other upstream 728830 22216035 ~ 22216470 (-)

Expression


Co-expression Network